TCONS_00043249 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043249
Unique NameTCONS_00043249
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length214

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043249 ID=TCONS_00043249|Name=TCONS_00043249|organism=Clytia hemisphaerica|type=transcript|length=214bp
GTATTATGATAaaagggtttttaaatttgcaatatagattttttttttta
tctatccAGGGAAGGATGAGAGACGAGAAGTACAAGGAACAATTTAGTGG
CCAAGCACTTTGAGgaGATCAGTGTGGTTCATACAGTGAAGTCCGGTGAT
AATCAATCGAGTTTGGATGGAACTTTCTTTATATATAGTAAAGAACGCAT
TATATATAATATCC
Run BLAST on NCBI

transcript from alignment at sc0004063:6031..6461-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043249 ID=TCONS_00043249|Name=TCONS_00043249|organism=Clytia hemisphaerica|type=transcript|length=431bp|location=Sequence derived from alignment at sc0004063:6031..6461- (Clytia hemisphaerica)
GTATTATGATAAAAGGGTTTTTAAATTTGCAATATAGATTTTTTTTTTTA
TCTATCCAGGGAAGGATGAGAGACGAGAAGTACAAGGAACAATTTAGTGG
CCAAGCACTTTGAGGTAATATATTTTATCTCAAATTGCAAATTTATTTTA
TCTAATCCTGATATTTTACCCTCCCATTTTTAGGGGGGATGTTAGAATCA
AAAATTTAAAACACCCCCCTACCAATTTCAAACCCCGCCCAAAAGGTGAG
AGTACTTAAAACAATTTTATAAGGCTTTTCACATGCTTCTATAAATTTTA
AACATTTTCTTTTCTTTTTTTCTTTTTGTAGGAGATCAGTGTGGTTCATA
CAGTGAAGTCCGGTGATAATCAATCGAGTTTGGATGGAACTTTCTTTATA
TATAGTAAAGAACGCATTATATATAATATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026962XLOC_026962Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043249-exon-sc0004063-1575043694:6348..6461TCONS_00043249-exon-sc0004063-1575043694:6348..6461Clytia hemisphaericaexon
TCONS_00043249-exon-sc0004063-1575043694:6031..6130TCONS_00043249-exon-sc0004063-1575043694:6031..6130Clytia hemisphaericaexon
TCONS_00043249-exon-sc0004063-1510915933:6348..6461TCONS_00043249-exon-sc0004063-1510915933:6348..6461Clytia hemisphaericaexon
TCONS_00043249-exon-sc0004063-1510915933:6031..6130TCONS_00043249-exon-sc0004063-1510915933:6031..6130Clytia hemisphaericaexon
TCONS_00043249-exon-sc0004063-1491911889:6348..6461TCONS_00043249-exon-sc0004063-1491911889:6348..6461Clytia hemisphaericaexon
TCONS_00043249-exon-sc0004063-1491911889:6031..6130TCONS_00043249-exon-sc0004063-1491911889:6031..6130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004063supercontigsc0004063:6031..6461 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3568	0	0	0	0	0	0	1.92068	2.5816	1.41622	0	1.61681	4.43826	3.33206	0.837976	0.937468	3.05563	3.36923	0	1.50927	0	1.9196	0	1.41434	0	1.3001	1.86044	1.98551	0	1.53432
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043249 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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