TCONS_00043242 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043242
Unique NameTCONS_00043242
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043242 ID=TCONS_00043242|Name=TCONS_00043242|organism=Clytia hemisphaerica|type=transcript|length=511bp
CATCAAGCGAGGTTTTGCCAGCTTAACTCCAGAGATCCTCTGTACACTAT
ACTCAACCTAAATTGTCCGACCTTATCTTGAGTATGCACATCAATTTGCG
TGAGGGAGTGCAAAGACGCGCACCCTTTCATATAGCAAAAGGCTTAAAAT
ACTTGATCTACCAACACTGGAATTTCGAAGACAGTTCTGTGATATGATCC
AGGTCTACAAACACCTCCACTTTTATGATAAAGTAACATTACCAGAAAAA
CTGACTAGTCGAACACGCCCAAACCGAAGACACGCTCACGAACTCTTACC
AAACTTCACAAATGATGGCTTTAACAGACCACAAACCAAACCACCTTTTA
CTACAGGTGTGTACCAATCTGGAACGAGCTACCAAGTAATGTTGTTTTAG
CAGATTCCATCAAGTCattcaaagaaaaagtttaactaTGCATGGAAAAC
CCATGGCATGAAATACGACACAAGAAGAGTTTAAATAAGATTGGTTAGAG
GCCCACTGTGA
Run BLAST on NCBI

transcript from alignment at sc0004057:7929..8439

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043242 ID=TCONS_00043242|Name=TCONS_00043242|organism=Clytia hemisphaerica|type=transcript|length=511bp|location=Sequence derived from alignment at sc0004057:7929..8439 (Clytia hemisphaerica)
TCACAGTGGGCCTCTAACCAATCTTATTTAAACTCTTCTTGTGTCGTATT
TCATGCCATGGGTTTTCCATGCAtagttaaactttttctttgaatGACTT
GATGGAATCTGCTAAAACAACATTACTTGGTAGCTCGTTCCAGATTGGTA
CACACCTGTAGTAAAAGGTGGTTTGGTTTGTGGTCTGTTAAAGCCATCAT
TTGTGAAGTTTGGTAAGAGTTCGTGAGCGTGTCTTCGGTTTGGGCGTGTT
CGACTAGTCAGTTTTTCTGGTAATGTTACTTTATCATAAAAGTGGAGGTG
TTTGTAGACCTGGATCATATCACAGAACTGTCTTCGAAATTCCAGTGTTG
GTAGATCAAGTATTTTAAGCCTTTTGCTATATGAAAGGGTGCGCGTCTTT
GCACTCCCTCACGCAAATTGATGTGCATACTCAAGATAAGGTCGGACAAT
TTAGGTTGAGTATAGTGTACAGAGGATCTCTGGAGTTAAGCTGGCAAAAC
CTCGCTTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026955XLOC_026955Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043242-exon-sc0004057-1491911889:7929..8439TCONS_00043242-exon-sc0004057-1491911889:7929..8439Clytia hemisphaericaexon
TCONS_00043242-exon-sc0004057-1510915933:7929..8439TCONS_00043242-exon-sc0004057-1510915933:7929..8439Clytia hemisphaericaexon
TCONS_00043242-exon-sc0004057-1575043694:7929..8439TCONS_00043242-exon-sc0004057-1575043694:7929..8439Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004057supercontigsc0004057:7929..8439 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.58738	0.687345	0.931086	0.520527	0.792115	0.876315	0.151034	1.13117	0.494974	2.08456	0.714113	0.312953	1.01568	0.48683	0.533654	1.78966	0	1.17508	1.62343	1.69881	0.340747	0.166205	0.134696	0	0	0.450268	1.44975	3.09442	1.82545	1.85984
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043242 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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