TCONS_00043241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043241
Unique NameTCONS_00043241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1119

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043241 ID=TCONS_00043241|Name=TCONS_00043241|organism=Clytia hemisphaerica|type=transcript|length=1119bp
ACTAGATTATTTTTACCACTATATGAAAAAGtgataacaaaaacaaaaga
aaacattaaatacAATCATCGCCAGCATTTTTAACAACCACATCATTGTG
ACAATTGTTggataaaaaatcaattttgtttgtttcatcACTATGGTATT
AACATTTTGATCTGGTAATGAATCCTGTGTCTATAGCAACATCTGGGTTA
CCATCATCATCAAAACAACATTATAGACCACCAGCAGCAGGGGGTTCGGT
ACATTTGCAGAAACATAAGATTGTTAGTGGTCGAGGTGCAGACGAAGCAG
TATCTAGTTCAGGTTACGGTGGATCACAAGACGGTGCGGACCAAATTTTA
ACAGTGGCTGCTACTACAACAAATCCTTTAACTAGACTGAATCGTGTTGC
TGCAGACGCAAGGTCTCAACAGGCTAGTCATCAAGTATTTGATGTGAGAT
CAATTGGAACTTATCAATCGTCGAGTGTTGGTAGCGGGAGTGTGATCAAT
ACGCGAAAACCATCACCATCTCAAGTCACGCAGGTCAGCGACTATGACGG
AACTGTCTCAGGTATTTATCAATTGAATTCGATGCGTCAACACGCTGTGT
CACCGTCTCCTGGTATTGAGGAGATAACAAAGGCAATGCCCGGTGTACGG
AAATGTTTATCTCCTGAATGTGGATGTTGTCAACGGAGTGATGTATTATT
GAGAGTCAACGACGAGTTGTTACAACACAAACTTCAACTTGAGGAGCAGA
ATAGAAACCTGTTGGAGGAAATTCAAGTATCGAGAAGATTTTATCAGGGA
ACATTGGCAGATTTGACTGCGCAACTTTCAATAGCGGAGAATCGAATCAA
ATATCTTCAAGAAGTGGTGAATACACAAGAAGAAGCTCTCTCCTCACTAA
ATAAGGTAAGTGTTAAGTCTTTTCTAACCAATTGAATGGCTTCATTCCGT
TTCGAGCGAAACTGAACCGTCACGTGCGAGCATGTTCGATAAAAAATAAG
CATACCTACAaactgaaatgcaaaaaaaattcgtgcagcttttctaaaac
gctgactTTTTTCagggttacttttaaagctgtttgagctttcttagacc
aaagatATTCACCTGCGGc
Run BLAST on NCBI

protein sequence of TCONS_00043241-protein

>TCONS_00043241-protein ID=TCONS_00043241-protein|Name=TCONS_00043241-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MNPVSIATSGLPSSSKQHYRPPAAGGSVHLQKHKIVSGRGADEAVSSSGY
GGSQDGADQILTVAATTTNPLTRLNRVAADARSQQASHQVFDVRSIGTYQ
SSSVGSGSVINTRKPSPSQVTQVSDYDGTVSGIYQLNSMRQHAVSPSPGI
EEITKAMPGVRKCLSPECGCCQRSDVLLRVNDELLQHKLQLEEQNRNLLE
EIQVSRRFYQGTLADLTAQLSIAENRIKYLQEVVNTQEEALSSLNKVSVK
SFLTN
Run BLAST on NCBI

transcript from alignment at sc0004057:167..4609-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043241 ID=TCONS_00043241|Name=TCONS_00043241|organism=Clytia hemisphaerica|type=transcript|length=4443bp|location=Sequence derived from alignment at sc0004057:167..4609- (Clytia hemisphaerica)
ACTAGATTATTTTTACCACTATATGAAAAAGTGATAACAAAAACAAAAGA
AAACATTAAATACAATCATCGCCAGCATTTTTAACAACCACATCATTGTG
ACAATTGTTGGATAAAAAATCAATTTTGTTTGTTTCATCACTATGGTATT
AACATTTTGATCTGGTAATGAATCCTGTGTCTATAGCAACATCTGGGTTA
CCATCATCATCAAAACAACATTATAGACCACCAGCAGCAGGGGGTTCGGT
ACATTTGCAGAAACATAAGATTGTTAGTGGTCGAGGTGCAGACGAAGCAG
TATCTAGTTCAGGTTACGGTGGATCACAAGACGGTGCGGACCAAATTTTA
ACAGTGGCTGCTACTACAACAAATCCTTTAACTAGACTGAATCGTGTTGC
TGCAGACGCAAGGTCTCAACAGGCTAGTCATCAAGTATTTGATGTGAGAT
CAATTGGAACTTATCAATCGTCGAGTGTTGGTAGCGGGAGTGTGATCAAT
ACGCGAAAACCATCACCATCTCAAGTCACGCAGGTATTCATTTGTTTACT
ATTATGTTTCGATTTTGAGAGAGTTTGGTTTTTCGATTACTTCAGGCGTA
CAAACTTTCGCCTTAGCCCAAGAAAGTAAATGTCTTTGAAAATTCTTGAG
AGGGCAATTCGCGAAAGTTTATGCTCTCGAAAAAAAATCTGAAAAGAAAA
TTTACTCTAATTTTCCTCTTTTATGATAACAAGGATAAAATTTAGTGTAG
AAATTATGCAAAAGTCTATCAATTGTGGTTGGATCTGGTTTGATTATATT
TGAACGATCAAAACACTAGTTTTATGCACCGAAAAATTTAATTTTCTGCT
TAAAATATAACTCATTCGGGAAAGTTTATGCTCGCGAAAAATTTTTTTGT
CAAATTCGCGAAAGTAAATGTCGTAGATTTCGCGATTTATCGACCTCGCG
AAAGTTTCTGCTCGCAAAAGTTTGTACGCCTAAAGTATTTTAAGGGCCGA
CATTATTTCTCTAACGAAAATTTAAACGTTGATATTAAAGTTTTGAGAAG
GTTGTATACCCAGCTAGGAATTTCCGTCTAACGTACATGAAAGATTAACG
AAGAAACGTCGTTTGCCAACAGGGTTTGAAGTTTGTTAATTTACGTAAAG
TAAGGGGACCGAATTTTCGGAATTCTCTTTTGGGCTTTTCTGCTGACTTA
TTTGTTTAGTTTTCTCGATTTTCACTTCTTTTCTACCTGTTTTTGACTAG
TTGTTCGGATCATGTAAACTTTTCATGCGACTCAGGCGAAGTTTTTGATA
ATTCGTTCTATTCTGTCTTTTTCTGAAAATAAACCGCTTTGTCGTGTACC
AAGATTTATCCTTTTGTAATCTGCAAAATTTAAATCTTTCTTAAAGCATT
CCATGCTGTGCATATTGTCTCAGTCTTTATTCCGAATCGTTTTTTTTTCT
CAAATGTCAAAAAGACTTAAATAGAAATATTTTTCCCTTATTTAACTGAT
CACAATGTGATGATGACGTCATGGAACAATGACGACGTTTAGTAGGTCAA
CTTGACAGTAACCATAAATCAAACTAAGATATTTATGATGAACATGTTTG
TTTTGGTGGTGTGTGCACTACACGCTTTTTCTTTTATAAGAATAATTTCT
ATAAGAATATCAGGGTGAAATTTCGGGTTTAAAACAATAAGCCTATTGTT
TAGAACAATAGAAAAATAAGAATAATGCTCACCCTCAACGAAAGTACACT
ATTCTTATAAAAGAAAAAGCGTGTACGTACTGTCTTACCTATGATTAACA
ACGTCGCGTATTATTTAATGCGAAAAAAATTCAAGGCTTATTCGTCGAAG
TGGGTTGTGAAGAAGTTCGTTGCTAAATCGTTTGATTTATTTTTATGAAT
TCATGCCAATAGAAGTTTTGAAATCGTAAAGACTCTAACGCATATCAGCC
CGGTTAGCCCCGGGTATAGAATGTGGGTTGAATAGTTTGTAAGCACTTTT
ACTTCGATTTTGTGGGTGGCTTTGAGTGAGAGCAAGGCAGAGGGTATCCG
AAGGGGTCCGAAAGCCTGTGGAGAGCTGTAGAGGCCTCAATCGGTCCGAG
GGTCAAAACTGTGGGTTATTCCAAAACATTTCAGTCATTTCGTCGTCCTC
AAAAGTGCAAATACAAAAACTAGCTAATACAAGGACCTCATGCAATAGAC
GTCATCGTTTTTTGCTTTTTTTGTTTGTTTGTTTTCAAGTTTGATTACAG
TTAGCAGATTGAGATATGAGAACAATAGGCTTATATTATTTGAAATTGAA
TTTGAAGGCTAGTGGTATTGACAATTTTGGCTCATACTGTTCATGATATT
GAGCTAACGCATTCGCTCATTAGGAACGGATATTTTTTCTCTGGCCCAAG
CATAAAATACCGGCGTTTAAACGCTTAGCAAAACACATGAATTTACACTT
AACAAAATACATGTTTTTGAGCACTCAATCTCTCTTCCAAAGATCTCCAA
AAGAAGGCTTTATTGGTGGGTTTATTGACGTGAACAGTGTTTATTTCTGT
CCTAATATTTTGACGATGTTGGTTTCTAATACTATTGTCATACATGGTAA
CAGTAATAATGTCACCTTGACACCGCCCGCTATCATCCATCGTGAGTGTG
GACTTCCTCTCAAAACATTAGAGAATAAATAATGTTGAATCTAGACAGTT
TTGACGAATTCATTTCTTTGAAAAATTACGTGAGGCACAAACAAGCAGAG
TCTCTCGGTAGTTAGTTAAGCCTTATTTAAAAATTAATCCGTGTTCATTA
GCTCTTTAAATCTTTGATCCCATAGTTGTCAGTTATGCTTGTTTGTTGAT
TTCTGTATTTGATGAAAAACTACTGTAGGTTAGGTCACAAGCTTGTATTA
GTTTTAATTAAAGGTGTATTGTTATGTAATTATGATAAAATGAAAGATAT
CAACTGATGTAGTAAGTCGGCCTGTAGCTTGCTGTGTATTGCAAAGAACG
TTTTTTTTGTTTAACGCTTTTTTTAATACCAATACCAGACCCGGGTGGTC
TAATTGTGATCCCTTAAAGGTGGTTTTGAACGTTACCTTGTACCTGACCT
GGTGCTTCGTTGTTTGAAGTTGAATCCAAAATAGTAATCACTCATTTGTT
ATTCTGTTGGCATGACATTTTTTGATGGATTTGTTGGTATTCCATCCTGG
AATTGGGCCAATAGTATCGCATAATGAGACGGATTGATTCTTTTGCGATT
ACCATGTTCTTTTCACTTTGTTTCAATTTAATTATCAAGTTATCGATTTA
TAAAAAAATATTTTCATTCTTGTTAGAGAGGTCATTCGACTATTCGTGGT
TGGTTGGTTACGTGCATCAAGAAATTCCTTTTAAAACATTGTTTTCATAG
CAAGTAATTATTTAGTCGTTAATCGATCATTTCATTAAATGACATGTAGC
AACCCGATTGAATGCAATGTCATTTATATTCAAATTTTTTATTATCATCT
AGGTCAGCGACTATGACGGAACTGTCTCAGGTATTTATCAATTGAATTCG
ATGCGTCAACACGCTGTGTCACCGTCTCCTGGTATTGAGGAGATAACAAA
GGCAATGCCCGGTGTACGGAAATGTTTATCTCCTGAATGTGGATGTTGTC
AACGGAGTGATGTATTATTGAGAGTCAACGACGAGTTGTTACAACACAAA
CTTCAACTTGAGGAGCAGAATAGAAACCTGTTGGAGGAAATTCAAGTATC
GAGAAGATTTTATCAGGGAACATTGGCAGATTTGACTGCGCAACTTTCAA
TAGGTAACGGGTTTCTCACATTTATAATACATGTTTTTTATAAGCAAATG
TCTACTCCTATATCAGGCTCGCATTATGCTTAGCATTCTATTGTTCTTAA
AAAATAGAGCTACTGTTTAGGTACCAAAAATGAGCCTGCATATGCTTATA
AACGTTGTACTAAAAACATTTACCTCTCCATGCTTAGGATCCTACTTCTA
ATATTTGTTTTCCTATCAGAGGAATTTTAACTTCAACTTTTTCTAGACAA
GTAGGCGACCGACAGAGGGCCATTTAAAACGGTCGTATCTTGACATGAAA
TTTTCTAATTTTAAAGGTGTTTCTAACTTTTATAATTTAACATAACTTTT
TTTTACAGCGGAGAATCGAATCAAATATCTTCAAGAAGTGGTGAATACAC
AAGAAGAAGCTCTCTCCTCACTAAATAAGGTAAGTGTTAAGTCTTTTCTA
ACCAATTGAATGGCTTCATTCCGTTTCGAGCGAAACTGAACCGTCACGTG
CGAGCATGTTCGATAAAAAATAAGCATACCTACAAACTGAAATGCAAAAA
AAATTCGTGCAGCTTTTCTAAAACGCTGACTTTTTTCAGGGTTACTTTTA
AAGCTGTTTGAGCTTTCTTAGACCAAAGATATTCACCTGCGGC

Coding sequence (CDS) from alignment at sc0004057:167..4609-

>TCONS_00043241 ID=TCONS_00043241|Name=TCONS_00043241|organism=Clytia hemisphaerica|type=CDS|length=2304bp|location=Sequence derived from alignment at sc0004057:167..4609- (Clytia hemisphaerica)
CGGAGAATCGAATCAAATATCTTCAAGAAGTGGTGAATACACAAGAAGAA
GCTCTCTCCTCACTAAATAAGGTAAGTGTTAAGTCTTTTCTAACCAATTG
AGTCAGCGACTATGACGGAACTGTCTCAGGTATTTATCAATTGAATTCGA
TGCGTCAACACGCTGTGTCACCGTCTCCTGGTATTGAGGAGATAACAAAG
GCAATGCCCGGTGTACGGAAATGTTTATCTCCTGAATGTGGATGTTGTCA
ACGGAGTGATGTATTATTGAGAGTCAACGACGAGTTGTTACAACACAAAC
TTCAACTTGAGGAGCAGAATAGAAACCTGTTGGAGGAAATTCAAGTATCG
AGAAGATTTTATCAGGGAACATTGGCAGATTTGACTGCGCAACTTTCAAT
AGATGAATCCTGTGTCTATAGCAACATCTGGGTTACCATCATCATCAAAA
CAACATTATAGACCACCAGCAGCAGGGGGTTCGGTACATTTGCAGAAACA
TAAGATTGTTAGTGGTCGAGGTGCAGACGAAGCAGTATCTAGTTCAGGTT
ACGGTGGATCACAAGACGGTGCGGACCAAATTTTAACAGTGGCTGCTACT
ACAACAAATCCTTTAACTAGACTGAATCGTGTTGCTGCAGACGCAAGGTC
TCAACAGGCTAGTCATCAAGTATTTGATGTGAGATCAATTGGAACTTATC
AATCGTCGAGTGTTGGTAGCGGGAGTGTGATCAATACGCGAAAACCATCA
CCATCTCAAGTCACGCAGCGGAGAATCGAATCAAATATCTTCAAGAAGTG
GTGAATACACAAGAAGAAGCTCTCTCCTCACTAAATAAGGTAAGTGTTAA
GTCTTTTCTAACCAATTGAGTCAGCGACTATGACGGAACTGTCTCAGGTA
TTTATCAATTGAATTCGATGCGTCAACACGCTGTGTCACCGTCTCCTGGT
ATTGAGGAGATAACAAAGGCAATGCCCGGTGTACGGAAATGTTTATCTCC
TGAATGTGGATGTTGTCAACGGAGTGATGTATTATTGAGAGTCAACGACG
AGTTGTTACAACACAAACTTCAACTTGAGGAGCAGAATAGAAACCTGTTG
GAGGAAATTCAAGTATCGAGAAGATTTTATCAGGGAACATTGGCAGATTT
GACTGCGCAACTTTCAATAGATGAATCCTGTGTCTATAGCAACATCTGGG
TTACCATCATCATCAAAACAACATTATAGACCACCAGCAGCAGGGGGTTC
GGTACATTTGCAGAAACATAAGATTGTTAGTGGTCGAGGTGCAGACGAAG
CAGTATCTAGTTCAGGTTACGGTGGATCACAAGACGGTGCGGACCAAATT
TTAACAGTGGCTGCTACTACAACAAATCCTTTAACTAGACTGAATCGTGT
TGCTGCAGACGCAAGGTCTCAACAGGCTAGTCATCAAGTATTTGATGTGA
GATCAATTGGAACTTATCAATCGTCGAGTGTTGGTAGCGGGAGTGTGATC
AATACGCGAAAACCATCACCATCTCAAGTCACGCAGCGGAGAATCGAATC
AAATATCTTCAAGAAGTGGTGAATACACAAGAAGAAGCTCTCTCCTCACT
AAATAAGGTAAGTGTTAAGTCTTTTCTAACCAATTGAGTCAGCGACTATG
ACGGAACTGTCTCAGGTATTTATCAATTGAATTCGATGCGTCAACACGCT
GTGTCACCGTCTCCTGGTATTGAGGAGATAACAAAGGCAATGCCCGGTGT
ACGGAAATGTTTATCTCCTGAATGTGGATGTTGTCAACGGAGTGATGTAT
TATTGAGAGTCAACGACGAGTTGTTACAACACAAACTTCAACTTGAGGAG
CAGAATAGAAACCTGTTGGAGGAAATTCAAGTATCGAGAAGATTTTATCA
GGGAACATTGGCAGATTTGACTGCGCAACTTTCAATAGATGAATCCTGTG
TCTATAGCAACATCTGGGTTACCATCATCATCAAAACAACATTATAGACC
ACCAGCAGCAGGGGGTTCGGTACATTTGCAGAAACATAAGATTGTTAGTG
GTCGAGGTGCAGACGAAGCAGTATCTAGTTCAGGTTACGGTGGATCACAA
GACGGTGCGGACCAAATTTTAACAGTGGCTGCTACTACAACAAATCCTTT
AACTAGACTGAATCGTGTTGCTGCAGACGCAAGGTCTCAACAGGCTAGTC
ATCAAGTATTTGATGTGAGATCAATTGGAACTTATCAATCGTCGAGTGTT
GGTAGCGGGAGTGTGATCAATACGCGAAAACCATCACCATCTCAAGTCAC
GCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026954XLOC_026954Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043241-proteinTCONS_00043241-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043241-exon-sc0004057-1575043694:4077..4609TCONS_00043241-exon-sc0004057-1575043694:4077..4609Clytia hemisphaericaexon
TCONS_00043241-exon-sc0004057-1575043694:807..1107TCONS_00043241-exon-sc0004057-1575043694:807..1107Clytia hemisphaericaexon
TCONS_00043241-exon-sc0004057-1575043694:167..451TCONS_00043241-exon-sc0004057-1575043694:167..451Clytia hemisphaericaexon
TCONS_00043241-exon-sc0004057-1510915933:4077..4609TCONS_00043241-exon-sc0004057-1510915933:4077..4609Clytia hemisphaericaexon
TCONS_00043241-exon-sc0004057-1510915933:807..1107TCONS_00043241-exon-sc0004057-1510915933:807..1107Clytia hemisphaericaexon
TCONS_00043241-exon-sc0004057-1510915933:167..451TCONS_00043241-exon-sc0004057-1510915933:167..451Clytia hemisphaericaexon
TCONS_00043241-exon-sc0004057-1491911889:4077..4609TCONS_00043241-exon-sc0004057-1491911889:4077..4609Clytia hemisphaericaexon
TCONS_00043241-exon-sc0004057-1491911889:807..1107TCONS_00043241-exon-sc0004057-1491911889:807..1107Clytia hemisphaericaexon
TCONS_00043241-exon-sc0004057-1491911889:167..451TCONS_00043241-exon-sc0004057-1491911889:167..451Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004057supercontigsc0004057:167..4609 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.32183	4.15602	1.26126	0.729596	7.47657	5.80557	11.5638	13.2149	17.871	18.939	13.0306	14.452	12.4601	10.7984	9.1819	10.9807	8.89358	8.90599	9.96301	17.0508	7.56409	9.27705	10.1726	12.5429	6.12101	6.64483	6.67359	5.07067	9.55031	10.5376
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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