TCONS_00043238 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043238
Unique NameTCONS_00043238
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043238 ID=TCONS_00043238|Name=TCONS_00043238|organism=Clytia hemisphaerica|type=transcript|length=421bp
atgcaatgtttatcaaatacAAGTTCACAGTATCCCAGGAAAATaaccaa
aacaaccaaaacagtcacacaagtttcaaaattttataaaatccaCAAAA
CCTCTGCTCTGACCTCATGACTGTAAGAACCAAGCATTAAATAGTTCCAG
AGGTATTGTCCATGTAAGAGTTTGTATTCCAAAGCAAATATTTCTTTTAC
TGCCCATTCTTCTCATCAATCCATCCTTCAACTTGGACCAGTTTCACATC
TCAATAGAATGTTAATACCATTTTGCCAATCATTTTATATAAATGTCCAA
TGTTATGGGGATGTATGGGGACGTTTTCTTCATGTCAAGCAAATGTCTCt
aaaatctttaagttggttggtttggtatACATATACGTTCAACAGGTAGA
GGGCAAAGTGATTGTTTGTCC
Run BLAST on NCBI

transcript from alignment at sc0004050:6031..6451

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043238 ID=TCONS_00043238|Name=TCONS_00043238|organism=Clytia hemisphaerica|type=transcript|length=421bp|location=Sequence derived from alignment at sc0004050:6031..6451 (Clytia hemisphaerica)
GGACAAACAATCACTTTGCCCTCTACCTGTTGAACGTATATGTataccaa
accaaccaacttaaagattttaGAGACATTTGCTTGACATGAAGAAAACG
TCCCCATACATCCCCATAACATTGGACATTTATATAAAATGATTGGCAAA
ATGGTATTAACATTCTATTGAGATGTGAAACTGGTCCAAGTTGAAGGATG
GATTGATGAGAAGAATGGGCAGTAAAAGAAATATTTGCTTTGGAATACAA
ACTCTTACATGGACAATACCTCTGGAACTATTTAATGCTTGGTTCTTACA
GTCATGAGGTCAGAGCAGAGGTTTTGtggattttataaaattttgaaact
tgtgtgactgttttggttgttttggttATTTTCCTGGGATACTGTGAACT
Tgtatttgataaacattgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026951XLOC_026951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043238-exon-sc0004050-1491911889:6031..6451TCONS_00043238-exon-sc0004050-1491911889:6031..6451Clytia hemisphaericaexon
TCONS_00043238-exon-sc0004050-1510915933:6031..6451TCONS_00043238-exon-sc0004050-1510915933:6031..6451Clytia hemisphaericaexon
TCONS_00043238-exon-sc0004050-1575043694:6031..6451TCONS_00043238-exon-sc0004050-1575043694:6031..6451Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004050supercontigsc0004050:6031..6451 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.195991	0	0	0	0.391458	0	0.42231	0.747315	0	0.740028	0.618243	0.246663	0	0.210137	0.113015	1.68463	0.285004	0	0.219485	1.32091	0.820878	2.04518	0.415862	0.183303	0	0.53664	0	0.640407	0.708998
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043238 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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