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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043195 ID=TCONS_00043195|Name=TCONS_00043195|organism=Clytia hemisphaerica|type=transcript|length=3142bp
TGGATGAAATTGATGGACCCCTCAAAGTGTTCGAAATTATGTaaagtttt
ggattttttgaggtttcGAAGTTTGTTGAATATGATATTTTTCAGAGTTA
CATCAATTTTGTAAATGAAGTATTTTGTGGAgcatgtaaaaatattttat
tttaatcgGCTTTTGGAAAAGTCCCAATGCCAAGAGAGTTAAAAGTGAGA
ATATGTCGAGTCTatgtgaaaaaattgaaaattgaaataagaaGGGAACC
TTATGTGTTCTTGAGGTGGAGTATGCACAATATTTGCATATTTATTTGGT
TGACTTGAGAGCCCCAAGACTGTGTAACTGAATATGGctgtgaaagaaaa
aatctgGTAGAATGTCTTTGGGGTGAGAATAGACTAGAATTGCAGATTTT
ATGCAATGAAGACTGCTGTAGCAGAAGATCTCTATTGTTAAAatgtgaaa
ttaaaatgaacaaCGGATGAGATGGAGACACCCCCACCAAGGGGGTGCCT
GGAGACAGGTGCGGATCCTGGAGTAAGCTCTCCTTGCCACTCTAGAGTCA
CCCACCATCTCATCCTGGCAAATTTGGTTCTGTAGTGCTGCAGTCACTAC
AgtgtgaacaaaaaaaaaaaaaatttgattgattgatttgctACTTGATT
GATTGGCTACTTGATTGATTGGCTACTTAATTGATTGACAGGTTGGATGA
CATGTATCAGAGATgttaaatcaaaaattgattttattactTCAGATTTG
TATATGAATGATTATCATTGTTTTATCATTGAAAATGTGTCAAAGAGACA
TAAATGGTGAAAATCAAATAAGTAAGCTTCGTTGTGAAATGGTACTTGAG
CAGGTTTTGAACATTAGACCCTCAGATTCCGATGTGTGAAAGTTACCCAT
CCACTGCACCATCAGGCCTCAGAAATAAGTTAggaaattttttattacat
tatATCTACAAATGGCGAACGCCCCCTGAATGtattattatcaaaataaa
gaagTTTATGAATGGTGGaataattgcccccgcaggagcgcagcgacacg
tttcacgcatagatattggactggaatctcgaatttttgcgttttttgtt
ttgttttgttttgtcgcgcaagcctacccgtagttagtctcttccgtaaa
tgttcggttttttttcagggacggcagttgctagcctaaaaactttttct
ttataatagcaggcgccgcgggcattttactcaactttcgacagtagatt
ctattccgcttgtagaattttgcccgattggtcaacatgcaggaaatgga
atggagaagtttctggaagtttttggcccagcgctaagcgagtgggcctt
tcatttgcaacgttCTGTTCGTACGTGTGTGCGTGTGTCTGTCCGGGTCC
GTTTTGGCAGAAACGGCGCCTTATATGAGTCCGCCATCTTTTAAAAAGAT
TGGGAACGAAATTGACTCGGTCATGCGTTCTCAGTACGACATTTATGGGG
AATGAAGTTACGTCGTCGGTTCAAGCAACGTTCGTTAAATCAGGAGCAAC
GTGTACTGAAATAACGGCAAAACTTTTAATCGAGGCGACGtatcaaaatg
aagataaaaaaccgCTAACGTACCCAAATTTTGACAAGAAGCTTCACTGA
CTTTTTCAGAAACGAAACTCAGTCATTTCAATTTTACAACCGAAGTACAC
TTTATGCAGACTTACTGACTTACAGATTGATCATCAAATTTTGTTGCTCA
AGATATATTTGTGAAAAGGAGATCCATCATCTCAATCTTTTTGTTGTTCA
GAAGATATATATTTACTTTGTCAAAGATCacttcctagccggtggctgct
cttaaAGATCCATCCACCCATCCATCATCATTCCATATCAGCAGATATAA
ACTAAAGCTCGATTGCTAGCTTTCAAGCTAATTTGGTGTGCAAACTGCTG
CATCCATCTATCCTGGTTTTTATTCAGgtttaattCCATCAATCCTTCCT
TCGAGGGAAGGGTCACAAtcaatttcagcaaaatcggcTTACATAGCATA
CTCAGCTAAATCTGCTTATATAGCTTACTCGGCTTAATCAGCTTACTCAG
TATACTAAACTTATTACGAAGCATACGAAACTTACGAAGCATACTCAGCT
CACAAAACTAtacgtttaaaaagaaaaaccaaaCTGTTTAAATATTGTTG
TTAATTCTTTTGTCCTTTTATTACCCTACCCTTTAAACGGCGTTAAGACA
AAATGATATCTATCGATGCCTATCGAATCTCAATCGGCAATTTTAATTAT
ACCCGTCAACTAAATCTTCGTTCAATCTATCGCGATCTGACAATAACCTC
GTGTGCTTCCAGTGAAGGGCTATCCCGAATTTTGAAGCCATCCAAGTTTT
TATCAGTAGCTCTTTATATTGGCATAATTCTTGTAACCTGCGGGGATATT
GAAACAAATCCTGGTCCCATTAATTTCTGCAAAATAGTTTTAGCATCTTT
CAATCAAGGGAATGCGACTATTTTCGGTCCTCAAGCTGGCACCCAATGTA
TGTATATGGCTTCTACGGCTATACTTTATTCCTATTTAAAACCACCAAGG
CAATGGGAAAAGTGCGATTTAGATATTATTCTTAGATTAGGCAATGAATT
ATACCGCGGCCTCGGGTACACAGACGAATACATTGAAATGAGTGACTTAC
CCTCTCGATTATGCATTGAAagcaaaacttttgaatttttgcgGACTCCT
GTGACTGTCTTAGTGCTAGATGGCAACagtaaaaattttgtaaatccaCC
CCCAACCTACAATTGTGGCATTTTTCTAGGTTGTGGTAACGGAACTGCAT
TTATTTTTGACAACAACCATTACTATGTTTTCGACTCTCACAATCGGACC
TCAAAGGGAATGTGCTGTTACGATAATACGGGAACCTCCGTACTGCTCGT
GTTTAGCACTAAAAGAGATCTCGAGGAATACATTAAAATATTCTACTTAG
AACAGTTTCGGAACAATCAAATCGCCTTTGAAATCCAATATGTTAAAACA
TCAATTTCCAATGATTCCCTAAACGCTTTTAAAAACGATCTCCGTAGTTT
CGGATACACCGAAAAAAGAAAGCAACCCCTGATTGATAGTGA Run BLAST on NCBI protein sequence of TCONS_00043195-protein >TCONS_00043195-protein ID=TCONS_00043195-protein|Name=TCONS_00043195-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MISIDAYRISIGNFNYTRQLNLRSIYRDLTITSCASSEGLSRILKPSKFL
SVALYIGIILVTCGDIETNPGPINFCKIVLASFNQGNATIFGPQAGTQCM
YMASTAILYSYLKPPRQWEKCDLDIILRLGNELYRGLGYTDEYIEMSDLP
SRLCIESKTFEFLRTPVTVLVLDGNSKNFVNPPPTYNCGIFLGCGNGTAF
IFDNNHYYVFDSHNRTSKGMCCYDNTGTSVLLVFSTKRDLEEYIKIFYLE
QFRNNQIAFEIQYVKTSISNDSLNAFKNDLRSFGYTEKRKQPLIDS Run BLAST on NCBI transcript from alignment at sc0003997:2106..8235+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043195 ID=TCONS_00043195|Name=TCONS_00043195|organism=Clytia hemisphaerica|type=transcript|length=6130bp|location=Sequence derived from alignment at sc0003997:2106..8235+ (Clytia hemisphaerica)
TGGATGAAATTGATGGACCCCTCAAAGTGTTCGAAATTATGTaaagtttt
ggattttttgaggtttcGAAGTTTGTTGAATATGATATTTTTCAGAGTTA
CATCAATTTTGTAAATGAAGTATTTTGTGGAgcatgtaaaaatattttat
tttaatcgGCTTTTGGAAAAGTCCCAATGCCAAGAGAGTTAAAAGTGAGA
ATATGTCGAGTCTatgtgaaaaaattgaaaattgaaataagaaGGGAACC
TTATGTGTTCTTGAGGTGGAGTATGCACAATATTTGCATATTTATTTGGT
TGACTTGAGAGCCCCAAGACTGTGTAACTGAATATGGctgtgaaagaaaa
aatctgGTAGAATGTCTTTGGGGTGAGAATAGACTAGAATTGCAGATTTT
ATGCAATGAAGACTGCTGTAGCAGAAGATCTCTATTGTTAAAatgtgaaa
ttaaaatgaacaaCGGATGAGATGGAGACACCCCCACCAAGGGGGTGCCT
GGAGACAGGTGCGGATCCTGGAGTAAGCTCTCCTTGCCACTCTAGAGTCA
CCCACCATCTCATCCTGGCAAATTTGGTTCTGTAGTGCTGCAGTCACTAC
AgtgtgaacaaaaaaaaaaaaaatttgattgattgatttgctACTTGATT
GATTGGCTACTTGATTGATTGGCTACTTAATTGATTGACAGGTTGGATGA
CATGTATCAGAGATgttaaatcaaaaattgattttattactTCAGATTTG
TATATGAATGATTATCATTGTTTTATCATTGAAAATGTGTCAAAGAGACA
TAAATGGTGAAAATCAAATAAGTAAGCTTCGTTGTGAAATGGTACTTGAG
CAGGTTTTGAACATTAGACCCTCAGATTCCGATGTGTGAAAGTTACCCAT
CCACTGCACCATCAGGCCTCAGAAATAAGTTAggaaattttttattacat
tatATCTACAAATGGCGAACGCCCCCTGAATGtattattatcaaaataaa
gaagTTTATGAATGGTGGaataattgcccccgcaggagcgcagcgacacg
tttcacgcatagatattggactggaatctcgaatttttgcgttttttgtt
ttgttttgttttgtcgcgcaagcctacccgtagttagtctcttccgtaaa
tgttcggttttttttcagggacggcagttgctagcctaaaaactttttct
ttataatagcaggcgccgcgggcattttactcaactttcgacagtagatt
ctattccgcttgtagaattttgcccgattggtcaacatgcaggaaatgga
atggagaagtttctggaagtttttggcccagcgctaagcgagtgggcctt
tcatttgcaacgttCTGTTCGTACGTGTGTGCGTGTGTCTGTCCGGGTCC
GTTTTGGCAGAAACGGCGCCTTATATGAGTCCGCCATCTTTTAAAAAGAT
TGGGAACGAAATTGACTCGGTCATGCGTTCTCAGTACGACATTTATGGGG
AATGAAGTTACGTCGTCGGTTCAAGCAACGTTCGTTAAATCAGGAGCAAC
GTGTACTGAAATAACGGCAAAACTTTTAATCGAGGCGACGtatcaaaatg
aagataaaaaaccgCTAACGTACCCAAATTTTGACAAGAAGCTTCACTGA
CTTTTTCAGAAACGAAACTCAGTCATTTCAATTTTACAACCGAAGTACAC
TTTATGCAGACTTACTGACTTACAGATTGATCATCAAATTTTGTTGCTCA
AGATATATTTGTGAAAAGGAGATCCATCATCTCAATCTTTTTGTTGTTCA
GAAGATATATATTTACTTTGTCAAAGATCacttcctagccggtggctgct
cttaaAGATCCATCCACCCATCCATCATCATTCCATATCAGCAGATATAA
ACTAAAGGTAAAATCTGTTTCTTTCACTCGTCTTTTCCACCTAAGTCTAT
CTATCTAAGCTCATGAGATGAATAATCAAACAATCgactaaaaaaaactt
ttttcatcgtAGAGCTTTAGGCGGGAATATCACATTTTGtgtcgttgggt
ctaaaaagtgagtcggtcggtctgtttgttgtaaaaaatttcagttttct
cAAAATTGATCTGTGAGGCAGTTAAGAGTGTTAACTGCGGCGTCGGGATG
CGCAATCGCataataaaaattaaacaaattaaCATTTGcatggtttcaaa
ttatgattGATGTATGAGAacccagacgtaattaatcgaaccaatcgaac
ggttgtcgaactttaatcaaatactcacaaatttcaTGAAATACAAACAA
GTTAGATAAGTTTGATTACTGAAATCGaactttttttaatcaaactttgg
caagtttaatcaaactttttcgagcaaagcttgcacaatatttgtcaaaa
gaaaaaaaagaaaaatgaagcatttcGAGAACGCGCTGCATTtttattta
atcttttttccGAGCAAAAATCAGTAAAGCCTAAAAGCAAAAGATGCGAT
TGCAGCCTTCGCAAGTCGAGATCTGCGGAGTtctttgtcgaatttgtcga
acatttcttgttgtcaaacttTATCGAACTGAGTTTTTTGTCgaacattt
cttgttgtcaaactttgtcgaacttaatatcttttgtcaaacttaatcaa
atactcacaattttatcGAACTTTTGTTGTTCGATTTAGTTTgacaaagt
ttgattagtttggtaatcgaactgttcgagtAATTACATCTGTATGAACA
CTGTGACATTTGACACATATAATGGCGCACTGATCTCACAGTAGATCTAT
TTCAGTTtaagaaattgcaaaaaacaaCAGCGCTGCTGAATTTGACATCG
CGCATTTAAAAAACGTGGAGTTAAGAACCTAGCGTTGCAGAAAACGATAA
CGCTTGCATTGCTGAATTCAACAGCGACAAAAAGAGAATCTTCATTGAAg
aagaacaaaaaattgaaattaaaaatgctaggaattaaaatcttattttt
caacctaGTTTAACAtacaacaaaaattttctcaattgaAGATGAACTGG
AGCCCCGGTAGAAAGTCGACTATTTTCCAcaaaaaaagtttcctttttaC
TTACAGACAATTTTGCACTTGAAATTATTTCTATTTAGCCATATTGGAAC
cctgtttttgatttttgttttaccCTCACTGGCAGCTCTGTAGAATTCTG
CAATGCTCAGCAAGACGCTGTCGAATTCAACAAGGGTAAGGCTGTCGAAT
TCGGCAGTGCTGCGGAATACAACAACACCAAAATAGTCCTTTAGGCAAAC
TCGAcggtctattgaataactaattccGCCAGCATAAATTACGGAAAATT
ACAACCTAAAGTTGTATAAATACTTTATAGCACGCCGCGCGGGAAAATTT
GCAACACTACGGTGTGCTACCCCGAGAGAGCTGTTAGCGTGCCAATTTGA
ACAAACTTATCGGTAGGTGATATCCAATTTTCCGCTGGTTGACGCTTGCA
TCCACTGAAGCTTGGAGGTATGGTAATTTATGCTGGCggaattagttatt
caatagaccgTGGAGTTCGCCTAAAGGACTATAGAACCAGAGTTGTCGAA
TTTGACAGCGCTGTTGTTTTCTGCAATATGCTGAACTGATTTTAATTAAC
AGAAAACANggaattagttattcaatagaccgTGGAGTTCGCCTAAAGGA
CTATAGAACCAGAGTTGTCGAATTTGACAGCGCTGTTGTTTTCTGCAATA
TGCTGAACTGATTTTAATTAACAGAAAACAANGCCTAAAGGACTATAGAA
CCAGAGTTGTCGAATTTGACAGCGCTGTTGTTTTCTGCAATATGCTGAAC
TGATTTTAATTAACAGAAAACAAGTTTGTTTATGCTTCATGTTCAATTGT
TTCTTGCATTTCCAGTTGGTATTTTCTTATATGTTTATTTTTCAGCTCGA
TTGCTAGCTTTCAAGCTAATTTGGTGTGCAAACTGCTGCATCCATCTATC
CTGGTTTTTATTCAGGTAGGTGACTTCTTTGCAGAAAATGTATTATATTC
TGTTATATTAACCCTTTTGCACATTTCCCTCTTTTTTACTATGCAAATCA
TTTCAAAAACTAGGAactaccttaagagaagaaactTTGACGGgtagaaa
ttttggcgaatgagcccattcgccaattttggtgcaatttgaCGGAATCA
TTTTGGCGAGTTGatcaaatttataaatttggtgagaattaattttggcg
aaagacctataattttgaatttcttttcgccaaaattccttcccttaagg
taattatCTCAAAATACGATTAAATTTTTGACTCCGTAATAACACAAGat
tgtttgtaaaaatttgaGTCGGCCACCTGTCTGGTTGGTAATTTACTGAC
CAAAATGTTCAAGAGGGTATAATAAATAAAGATTTAGATGATTTGCTATC
CAAATTGTTCATTAAATTGCATAAGTACATAAAAGATTGATAACGTGATT
ATTTGGTACTTTGAAGACCGGTTTGTAAAATACACATCAAGCCTTTTgac
ttttgacttgaaattttcactagTGATTAGGTATTGGCAATATGGCGCAT
GGTATGCAAAAATTGAGTTCGTTGGTATTTTACATACTCTTCAGTAATTT
ATCCACAATACCCAATTACCATACCAGACAACTACTCtagggtacctaat
aagcgtccccccccgctaattaattttttgagaattttccaCCCGGGACA
TTCTTATTCAAACTTTCgaggaaatgtttttgaaagttcctttTTTGCCC
TGATTCTTCTATATTCTGCTGattgtcaaaaaaattccacccaggacatt
tttatgcCAACCCCCTCCTCCTcgtttattaggtacccaagagtactTGT
CTAATTATAGCACTTCCCAGTCCGGAGATATAAAATTTTGtaaccttttc
tttttcttttttcaggtttaattCCATCAATCCTTCCTTCGAGGGAAGGG
TCACAAtcaatttcagcaaaatcggcTTACATAGCATACTCAGCTAAATC
TGCTTATATAGCTTACTCGGCTTAATCAGCTTACTCAGTATACTAAACTT
ATTACGAAGCATACGAAACTTACGAAGCATACTCAGCTCACAAAACTAta
cgtttaaaaagaaaaaccaaaCTGTTTAAATATTGTTGTTAATTCTTTTG
TCCTTTTATTACCCTACCCTTTAAACGGCGTTAAGACAAAATGATATCTA
TCGATGCCTATCGAATCTCAATCGGCAATTTTAATTATACCCGTCAACTA
AATCTTCGTTCAATCTATCGCGATCTGACAATAACCTCGTGTGCTTCCAG
TGAAGGGCTATCCCGAATTTTGAAGCCATCCAAGTTTTTATCAGTAGCTC
TTTATATTGGCATAATTCTTGTAACCTGCGGGGATATTGAAACAAATCCT
GGTCCCATTAATTTCTGCAAAATAGTTTTAGCATCTTTCAATCAAGGGAA
TGCGACTATTTTCGGTCCTCAAGCTGGCACCCAATGTATGTATATGGCTT
CTACGGCTATACTTTATTCCTATTTAAAACCACCAAGGCAATGGGAAAAG
TGCGATTTAGATATTATTCTTAGATTAGGCAATGAATTATACCGCGGCCT
CGGGTACACAGACGAATACATTGAAATGAGTGACTTACCCTCTCGATTAT
GCATTGAAagcaaaacttttgaatttttgcgGACTCCTGTGACTGTCTTA
GTGCTAGATGGCAACagtaaaaattttgtaaatccaCCCCCAACCTACAA
TTGTGGCATTTTTCTAGGTTGTGGTAACGGAACTGCATTTATTTTTGACA
ACAACCATTACTATGTTTTCGACTCTCACAATCGGACCTCAAAGGGAATG
TGCTGTTACGATAATACGGGAACCTCCGTACTGCTCGTGTTTAGCACTAA
AAGAGATCTCGAGGAATACATTAAAATATTCTACTTAGAACAGTTTCGGA
ACAATCAAATCGCCTTTGAAATCCAATATGTTAAAACATCAATTTCCAAT
GATTCCCTAAACGCTTTTAAAAACGATCTCCGTAGTTTCGGATACACCGA
AAAAAGAAAGCAACCCCTGATTGATAGTGA Coding sequence (CDS) from alignment at sc0003997:2106..8235+ >TCONS_00043195 ID=TCONS_00043195|Name=TCONS_00043195|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at sc0003997:2106..8235+ (Clytia hemisphaerica)
ATGATATCTATCGATGCCTATCGAATCTCAATCGGCAATTTTAATTATAC
CCGTCAACTAAATCTTCGTTCAATCTATCGCGATCTGACAATAACCTCGT
GTGCTTCCAGTGAAGGGCTATCCCGAATTTTGAAGCCATCCAAGTTTTTA
TCAGTAGCTCTTTATATTGGCATAATTCTTGTAACCTGCGGGGATATTGA
AACAAATCCTGGTCCCATTAATTTCTGCAAAATAGTTTTAGCATCTTTCA
ATCAAGGGAATGCGACTATTTTCGGTCCTCAAGCTGGCACCCAATGTATG
TATATGGCTTCTACGGCTATACTTTATTCCTATTTAAAACCACCAAGGCA
ATGGGAAAAGTGCGATTTAGATATTATTCTTAGATTAGGCAATGAATTAT
ACCGCGGCCTCGGGTACACAGACGAATACATTGAAATGAGTGACTTACCC
TCTCGATTATGCATTGAAagcaaaacttttgaatttttgcgGACTCCTGT
GACTGTCTTAGTGCTAGATGGCAACagtaaaaattttgtaaatccaCCCC
CAACCTACAATTGTGGCATTTTTCTAGGTTGTGGTAACGGAACTGCATTT
ATTTTTGACAACAACCATTACTATGTTTTCGACTCTCACAATCGGACCTC
AAAGGGAATGTGCTGTTACGATAATACGGGAACCTCCGTACTGCTCGTGT
TTAGCACTAAAAGAGATCTCGAGGAATACATTAAAATATTCTACTTAGAA
CAGTTTCGGAACAATCAAATCGCCTTTGAAATCCAATATGTTAAAACATC
AATTTCCAATGATTCCCTAAACGCTTTTAAAAACGATCTCCGTAGTTTCG
GATACACCGAAAAAAGAAAGCAACCCCTGATTGATAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043195-exon-sc0003997-1491911889:2106..4012 | TCONS_00043195-exon-sc0003997-1491911889:2106..4012 | Clytia hemisphaerica | exon |
| TCONS_00043195-exon-sc0003997-1510915933:2106..4012 | TCONS_00043195-exon-sc0003997-1510915933:2106..4012 | Clytia hemisphaerica | exon |
| TCONS_00043195-exon-sc0003997-1575043694:2106..4012 | TCONS_00043195-exon-sc0003997-1575043694:2106..4012 | Clytia hemisphaerica | exon |
| TCONS_00043195-exon-sc0003997-1491911889:6051..6120 | TCONS_00043195-exon-sc0003997-1491911889:6051..6120 | Clytia hemisphaerica | exon |
| TCONS_00043195-exon-sc0003997-1510915933:6051..6120 | TCONS_00043195-exon-sc0003997-1510915933:6051..6120 | Clytia hemisphaerica | exon |
| TCONS_00043195-exon-sc0003997-1575043694:6051..6120 | TCONS_00043195-exon-sc0003997-1575043694:6051..6120 | Clytia hemisphaerica | exon |
| TCONS_00043195-exon-sc0003997-1491911889:7071..8235 | TCONS_00043195-exon-sc0003997-1491911889:7071..8235 | Clytia hemisphaerica | exon |
| TCONS_00043195-exon-sc0003997-1510915933:7071..8235 | TCONS_00043195-exon-sc0003997-1510915933:7071..8235 | Clytia hemisphaerica | exon |
| TCONS_00043195-exon-sc0003997-1575043694:7071..8235 | TCONS_00043195-exon-sc0003997-1575043694:7071..8235 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003997 | supercontig | sc0003997:2106..8235 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006928 | htUSP_central_domain |
Blast
The following BLAST results are available for this feature:
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