TCONS_00043165 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043165
Unique NameTCONS_00043165
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043165 ID=TCONS_00043165|Name=TCONS_00043165|organism=Clytia hemisphaerica|type=transcript|length=601bp
GCATTCAGTCTCGTTGTCATGGTTTTTTACCACCCCACTCAAAATGTAAC
CgaaatttgaagaaattgcGACAGGGTCACCTAACCTCCCTTTTACTACT
CGCCTCCCGTCAATGAAACTCCAATAAAAGTTTGATCCGATAAGAATATC
AATGTTAATAAATTTTTGACTGTTGCTGTCTGCAAGTTCTAAGCCTTTTA
agtgtttgtaatttttctgtAAAACTTCCGTAAGTTGGTCCTTTACTGGA
TAACAAATTTCTGATACGTAGGCTTCTATTTTCATGGGCCCGGTGTTGGT
TTAGATTGCTAACTCGACAACGTCCAATACTTTTCCTTGCTTGGCACCTC
CGAAACTTTTGATTGTTAATTCTCTTTCCAATAGTTCCCAATTTCAATTC
CTTTCTCACTTCAGGGGTCACATAAGACAATTGACTTCCGCTGTCAAATA
AAATACGGTACTGTCCCGAAGACTCATTTTCCGTACCTCGAACTGTAGCC
TTAGCTGTTTGTAATAAAACTGTTCCTCCCACACCTGCATAAGTACTTTG
TGTCTCAAGAGGGTCTTCTTCTTGTTGTTCAGTTTGTTGAGGAGTTTTTT
G
Run BLAST on NCBI

protein sequence of TCONS_00043165-protein

>TCONS_00043165-protein ID=TCONS_00043165-protein|Name=TCONS_00043165-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
QKTPQQTEQQEEDPLETQSTYAGVGGTVLLQTAKATVRGTENESSGQYRI
LFDSGSQLSYVTPEVRKELKLGTIGKRINNQKFRRCQARKSIGRCRVSNL
NQHRAHENRSLRIRNLLSSKGPTYGSFTEKLQTLKRLRTCRQQQSKIY
Run BLAST on NCBI

transcript from alignment at sc0003970:833..1433

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043165 ID=TCONS_00043165|Name=TCONS_00043165|organism=Clytia hemisphaerica|type=transcript|length=601bp|location=Sequence derived from alignment at sc0003970:833..1433 (Clytia hemisphaerica)
CAAAAAACTCCTCAACAAACTGAACAACAAGAAGAAGACCCTCTTGAGAC
ACAAAGTACTTATGCAGGTGTGGGAGGAACAGTTTTATTACAAACAGCTA
AGGCTACAGTTCGAGGTACGGAAAATGAGTCTTCGGGACAGTACCGTATT
TTATTTGACAGCGGAAGTCAATTGTCTTATGTGACCCCTGAAGTGAGAAA
GGAATTGAAATTGGGAACTATTGGAAAGAGAATTAACAATCAAAAGTTTC
GGAGGTGCCAAGCAAGGAAAAGTATTGGACGTTGTCGAGTTAGCAATCTA
AACCAACACCGGGCCCATGAAAATAGAAGCCTACGTATCAGAAATTTGTT
ATCCAGTAAAGGACCAACTTACGGAAGTTTTacagaaaaattacaaacac
tTAAAAGGCTTAGAACTTGCAGACAGCAACAGTCAAAAATTTATTAACAT
TGATATTCTTATCGGATCAAACTTTTATTGGAGTTTCATTGACGGGAGGC
GAGTAGTAAAAGGGAGGTTAGGTGACCCTGTCgcaatttcttcaaatttc
GGTTACATTTTGAGTGGGGTGGTAAAAAACCATGACAACGAGACTGAATG
C

Coding sequence (CDS) from alignment at sc0003970:833..1433

>TCONS_00043165 ID=TCONS_00043165|Name=TCONS_00043165|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0003970:833..1433 (Clytia hemisphaerica)
CAAAAAACTCCTCAACAAACTGAACAACAAGAAGAAGACCCTCTTGAGAC
ACAAAGTACTTATGCAGGTGTGGGAGGAACAGTTTTATTACAAACAGCTA
AGGCTACAGTTCGAGGTACGGAAAATGAGTCTTCGGGACAGTACCGTATT
TTATTTGACAGCGGAAGTCAATTGTCTTATGTGACCCCTGAAGTGAGAAA
GGAATTGAAATTGGGAACTATTGGAAAGAGAATTAACAATCAAAAGTTTC
GGAGGTGCCAAGCAAGGAAAAGTATTGGACGTTGTCGAGTTAGCAATCTA
AACCAACACCGGGCCCATGAAAATAGAAGCCTACGTATCAGAAATTTGTT
ATCCAGTAAAGGACCAACTTACGGAAGTTTTacagaaaaattacaaacac
tTAAAAGGCTTAGAACTTGCAGACAGCAACAGTCAAAAATTTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026887XLOC_026887Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043165-exon-sc0003970-1491911889:833..1433TCONS_00043165-exon-sc0003970-1491911889:833..1433Clytia hemisphaericaexon
TCONS_00043165-exon-sc0003970-1510915933:833..1433TCONS_00043165-exon-sc0003970-1510915933:833..1433Clytia hemisphaericaexon
TCONS_00043165-exon-sc0003970-1575043694:833..1433TCONS_00043165-exon-sc0003970-1575043694:833..1433Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043165-proteinTCONS_00043165-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003970supercontigsc0003970:833..1433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.738391	0.898264	0	0.129498	0.64506	0.863856	0.581789	1.6162	0.731524	0.566013	0.917131	0.689461	0.94696	0.663536	2.04258	2.2408	0.504149	1.84679	0.651249	0.313317	0.543736	0.380233	0.103771	0.49943	0.641852	1.52687	0.160541	0.711735	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008737Peptidase_asp_put
IPR021109Peptidase_aspartic_dom
IPR001969Aspartic_peptidase_AS
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043165 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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