TCONS_00043160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043160
Unique NameTCONS_00043160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043160 ID=TCONS_00043160|Name=TCONS_00043160|organism=Clytia hemisphaerica|type=transcript|length=678bp
GTAAGTTTATAATCTTCCCCCGGGAAATTCTcacacaacaaaacaaaaca
aattgcTGGTGTTTGACGTTCCAGCTTTTTGAATGAGTTTTAGTTTTTAA
CAGCACAGCCCTCTCATTCAACCATCAAGAACAACTGGTATTTTACCAAT
GCTCCAATCTTGATTCAAAAGGTAAAGATtagttttaagattttttcatt
cttctcAGCATCTTTTTTTTCCTCTGATTAAAACTATATCCAGACACGTA
GTAACACACAGTCAGACAGTTCTAGTAACAAAAAAGTCTGATTTTAGAAT
TTCAAAGAGACGATAAGCCCACAATAAAGATCAATTTTAACTCAATACTC
AATATTTGGCTATTctatttttaaaccatacaggaGTATTGATAGGACTT
GACCAGGGTGGCTCTGGAGGGAGCTTTGattttccaaggtttttttttgg
tttatttttcataaattttccaAACTCAAAGGGGGGTCATAGAAattgaa
agcttgaaaaaataaaacgtgcagcaggcAGCTATTAACCAACCAAAATG
ATCGATAATGATTGAAGTAATCGAACAACCacttatcgattaacaatcga
atctcgagtaccaaaatttcaaaaaaattgtgagtattccatcactttct
taacaaccctttgAAGACTGGATAACCG
Run BLAST on NCBI

transcript from alignment at sc0003967:3451..4128

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043160 ID=TCONS_00043160|Name=TCONS_00043160|organism=Clytia hemisphaerica|type=transcript|length=678bp|location=Sequence derived from alignment at sc0003967:3451..4128 (Clytia hemisphaerica)
CGGTTATCCAGTCTTcaaagggttgttaagaaagtgatggaatactcaca
atttttttgaaattttggtactcgagattcgattgttaatcgataagtGG
TTGTTCGATTACTTCAATCATTATCGATCATTTTGGTTGGTTAATAGCTg
cctgctgcacgttttattttttcaagctttcaatTTCTATGACCCCCCTT
TGAGTTtggaaaatttatgaaaaataaaccaaaaaaaaaccttggaaaat
CAAAGCTCCCTCCAGAGCCACCCTGGTCAAGTCCTATCAATACtcctgta
tggtttaaaaatagAATAGCCAAATATTGAGTATTGAGTTAAAATTGATC
TTTATTGTGGGCTTATCGTCTCTTTGAAATTCTAAAATCAGACTTTTTTG
TTACTAGAACTGTCTGACTGTGTGTTACTACGTGTCTGGATATAGTTTTA
ATCAGAGGAAAAAAAAGATGCTgagaagaatgaaaaaatcttaaaactaA
TCTTTACCTTTTGAATCAAGATTGGAGCATTGGTAAAATACCAGTTGTTC
TTGATGGTTGAATGAGAGGGCTGTGCTGTTAAAAACTAAAACTCATTCAA
AAAGCTGGAACGTCAAACACCAgcaatttgttttgttttgttgtgtgAGA
ATTTCCCGGGGGAAGATTATAAACTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026882XLOC_026882Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043160-exon-sc0003967-1491911889:3451..4128TCONS_00043160-exon-sc0003967-1491911889:3451..4128Clytia hemisphaericaexon
TCONS_00043160-exon-sc0003967-1510915933:3451..4128TCONS_00043160-exon-sc0003967-1510915933:3451..4128Clytia hemisphaericaexon
TCONS_00043160-exon-sc0003967-1575043694:3451..4128TCONS_00043160-exon-sc0003967-1575043694:3451..4128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003967supercontigsc0003967:3451..4128 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.15311	11.5075	5.54042	4.52492	0.306037	0.403057	0.291763	0.0910482	4.27092	4.50063	5.67129	4.08074	3.77321	2.50785	2.44838	2.94767	3.23685	3.08485	2.41239	1.26219	3.65692	4.70901	9.8009	8.04305	0.406086	0	3.11175	2.87815	4.95368	5.30364
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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