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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043159 ID=TCONS_00043159|Name=TCONS_00043159|organism=Clytia hemisphaerica|type=transcript|length=1707bp
CTACAACATAATTGACAAATCGGGGAGGTGACATAAAGATGTTTTAATAC
CATTTTCACCTTTCACAAAAATCTTCGTTCATCATGGCTATAAGATCATA
AAAAATTTCGaacgtttttattttcacaacATTGATACAACATtcctgaa
atattttaaattaatttttgtcTTCTACAAAAATCTTCGTTCATCATGGC
TATAAGATCATCTATTGATTCAAACGTTTTCACAGCATTGAGACAATCTA
AGGAATGCAAAGATGCCCATCGGTAACCGTTGATGTTTGGTCGTGAAAGA
GCTTTACATACTTTATCTGGTAGTTTAATGTTCTGATCTTGGATATAGAA
AGTAATGGCATCACCTTCTTTCGGTTTCAAATCAGCGATTATCAAATCAG
GACCAAACTTTTCATTAAAGATTTTTCGACCAATAATTGCATAATCATCC
CGGAAATAACTTTGTGTAAATAAAAAACTCTGCGGGTATATCTTTATCCT
CAACGGTTGTGTCTTTTTTATTTCACGCAAAGCGTTGACTTGTTTCAATA
AAGCAACGAAATACGGAATATAAACATCATGAGGGATGAGCTGTGTGTAG
ATATGGATCATAGTTATTCCAGTCATGCAAGTTTCATTAAACAGGTCATC
TCTTGAAAGAAGATATTGGTACATGTATTCATATCGGTTGAAGTCTGGCT
CTTTTATCACATCAAGTAGATCTTTGAGGATAACATTCCTCATCTCTGCA
GGTGCAGGTTCATATAGAAAGAAAAAGGAGCCCCGATAGATTGGCAACCA
ATTTGGAAGTGAACAAAAATTTTGACAGTGTAGAATGATATTCCATAGTC
GATCCTCTTGAAGCCCTtgcaatatttgaaaaatgtttcttctttttata
tcaCGAAAATCTATAATCAAATAGACCAATGTTTGTTTGACAGCGTCGTT
CACCCTCACTTCTTCGTTATAAAGACGCTTCAAGAGATTTTCCGAATCGC
GTtcacaaatttcattcaaaaagtatctactgcgaaaaaaattcctttca
aaatgaTTGACATTGAAGTTCGGTCGTCATTGAACAACAAAATCTTCACT
CGGAAGGTATATATTGATGGTGAAGCAATCTTCGTTCCGTGTCAAAGGTT
CCAAGCGTTGCAAGAGGTCATCCAGAAAATCCAATTCAATCAAATCAGCA
ATAATGGTTATATTATTTACTTGTGTGCAAGCCAACATTCCGAATTCTTC
AAACTGGAAGCCATCAGCTTTGCAATGGGACATCAATATGAAGAGAAAAC
AAGTCACCAAAAAGGAGATACGGACCATTTTGTAAATACTCGAAAATAAT
TTCTGTTATTGTGAAAAAGAGTGagtaaatgtattttttttcttgcaaGA
ATTTATACCAGTATTTAGGAAAGTCCCTTCAgaaattgttttgaaagaaa
taatGGACTAATTACTTACTCATTACTAAAACGATAATGAGACACCAATA
ATgtcattttattgtttataaATTAATTACAATACacgttttcctttttt
aaagCAACTGTTTTATCAAGCAgtttcaatgtttcttaagaaatcggcct
tttgagccttaaagggacattaaagtagtaaaatgtaaacattgcgcgaa
ccacgtgtcattaaagagaacaattgaaatcacgtgtccaaaacaaactt
gtaaaac Run BLAST on NCBI protein sequence of TCONS_00043159-protein >TCONS_00043159-protein ID=TCONS_00043159-protein|Name=TCONS_00043159-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MRNVILKDLLDVIKEPDFNRYEYMYQYLLSRDDLFNETCMTGITMIHIYT
QLIPHDVYIPYFVALLKQVNALREIKKTQPLRIKIYPQSFLFTQSYFRDD
YAIIGRKIFNEKFGPDLIIADLKPKEGDAITFYIQDQNIKLPDKVCKALS
RPNINGYRWASLHSLDCLNAVKTFESIDDLIAMMNEDFCRRQKLI Run BLAST on NCBI transcript from alignment at sc0003966:6052..7758 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043159 ID=TCONS_00043159|Name=TCONS_00043159|organism=Clytia hemisphaerica|type=transcript|length=1707bp|location=Sequence derived from alignment at sc0003966:6052..7758 (Clytia hemisphaerica)
gttttacaagtttgttttggacacgtgatttcaattgttctctttaatga
cacgtggttcgcgcaatgtttacattttactactttaatgtccctttaag
gctcaaaaggccgatttcttaagaaacattgaaacTGCTTGATAAAACAG
TTGctttaaaaaaggaaaacgtGTATTGTAATTAATttataaacaataaa
atgacATTATTGGTGTCTCATTATCGTTTTAGTAATGAGTAAGTAATTAG
TCCattatttctttcaaaacaatttcTGAAGGGACTTTCCTAAATACTGG
TATAAATTCttgcaagaaaaaaaatacatttactCACTCTTTTTCACAAT
AACAGAAATTATTTTCGAGTATTTACAAAATGGTCCGTATCTCCTTTTTG
GTGACTTGTTTTCTCTTCATATTGATGTCCCATTGCAAAGCTGATGGCTT
CCAGTTTGAAGAATTCGGAATGTTGGCTTGCACACAAGTAAATAATATAA
CCATTATTGCTGATTTGATTGAATTGGATTTTCTGGATGACCTCTTGCAA
CGCTTGGAACCTTTGACACGGAACGAAGATTGCTTCACCATCAATATATA
CCTTCCGAGTGAAGATTTTGTTGTTCAATGACGACCGAACTTCAATGTCA
Atcattttgaaaggaatttttttcgcagtagatactttttgaatgaaatt
tgtgaACGCGATTCGGAAAATCTCTTGAAGCGTCTTTATAACGAAGAAGT
GAGGGTGAACGACGCTGTCAAACAAACATTGGTCTATTTGATTATAGATT
TTCGtgatataaaaagaagaaacatttttcaaatattgcaAGGGCTTCAA
GAGGATCGACTATGGAATATCATTCTACACTGTCAAAATTTTTGTTCACT
TCCAAATTGGTTGCCAATCTATCGGGGCTCCTTTTTCTTTCTATATGAAC
CTGCACCTGCAGAGATGAGGAATGTTATCCTCAAAGATCTACTTGATGTG
ATAAAAGAGCCAGACTTCAACCGATATGAATACATGTACCAATATCTTCT
TTCAAGAGATGACCTGTTTAATGAAACTTGCATGACTGGAATAACTATGA
TCCATATCTACACACAGCTCATCCCTCATGATGTTTATATTCCGTATTTC
GTTGCTTTATTGAAACAAGTCAACGCTTTGCGTGAAATAAAAAAGACACA
ACCGTTGAGGATAAAGATATACCCGCAGAGTTTTTTATTTACACAAAGTT
ATTTCCGGGATGATTATGCAATTATTGGTCGAAAAATCTTTAATGAAAAG
TTTGGTCCTGATTTGATAATCGCTGATTTGAAACCGAAAGAAGGTGATGC
CATTACTTTCTATATCCAAGATCAGAACATTAAACTACCAGATAAAGTAT
GTAAAGCTCTTTCACGACCAAACATCAACGGTTACCGATGGGCATCTTTG
CATTCCTTAGATTGTCTCAATGCTGTGAAAACGTTTGAATCAATAGATGA
TCTTATAGCCATGATGAACGAAGATTTTTGTAGAAgacaaaaattaattt
aaaatatttcaggaATGTTGTATCAATgttgtgaaaataaaaacgttCGA
AATTTTTTATGATCTTATAGCCATGATGAACGAAGATTTTTGTGAAAGGT
GAAAATGGTATTAAAACATCTTTATGTCACCTCCCCGATTTGTCAATTAT
GTTGTAG Coding sequence (CDS) from alignment at sc0003966:6052..7758 >TCONS_00043159 ID=TCONS_00043159|Name=TCONS_00043159|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0003966:6052..7758 (Clytia hemisphaerica)
ATGAGGAATGTTATCCTCAAAGATCTACTTGATGTGATAAAAGAGCCAGA
CTTCAACCGATATGAATACATGTACCAATATCTTCTTTCAAGAGATGACC
TGTTTAATGAAACTTGCATGACTGGAATAACTATGATCCATATCTACACA
CAGCTCATCCCTCATGATGTTTATATTCCGTATTTCGTTGCTTTATTGAA
ACAAGTCAACGCTTTGCGTGAAATAAAAAAGACACAACCGTTGAGGATAA
AGATATACCCGCAGAGTTTTTTATTTACACAAAGTTATTTCCGGGATGAT
TATGCAATTATTGGTCGAAAAATCTTTAATGAAAAGTTTGGTCCTGATTT
GATAATCGCTGATTTGAAACCGAAAGAAGGTGATGCCATTACTTTCTATA
TCCAAGATCAGAACATTAAACTACCAGATAAAGTATGTAAAGCTCTTTCA
CGACCAAACATCAACGGTTACCGATGGGCATCTTTGCATTCCTTAGATTG
TCTCAATGCTGTGAAAACGTTTGAATCAATAGATGATCTTATAGCCATGA
TGAACGAAGATTTTTGTAGAAgacaaaaattaatttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043159-exon-sc0003966-1491911889:6052..7758 | TCONS_00043159-exon-sc0003966-1491911889:6052..7758 | Clytia hemisphaerica | exon |
| TCONS_00043159-exon-sc0003966-1510915933:6052..7758 | TCONS_00043159-exon-sc0003966-1510915933:6052..7758 | Clytia hemisphaerica | exon |
| TCONS_00043159-exon-sc0003966-1575043694:6052..7758 | TCONS_00043159-exon-sc0003966-1575043694:6052..7758 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003966 | supercontig | sc0003966:6052..7758 . |
Blast
The following BLAST results are available for this feature:
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