TCONS_00039200 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00039200
Unique Name	TCONS_00039200
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	919

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002039:25672..30816+

transcript sequence

>TCONS_00039200 ID=TCONS_00039200|Name=TCONS_00039200|organism=Clytia hemisphaerica|type=transcript|length=919bp
TActtaataaaatgaaatattccaagttgaATGCGAGTCACTCAGGATTT
CTTTTCGCACTCGGATTGATGGGCCATTTTGTCGTCACTTCCCAAACTTC
ACCTCCATGACTATCTTATAAAGGGGCATGCGTTGACAACTGTTGCTCTA
CTCATCGGAACAGCTGCAACGAAGTCTCCTCTTCTTCGGTACGGGAGATC
TTCACTTGGTGAAAATTCTTCTACGTGAGATCGGAAAACCACCTGGTGTA
GAGATCGATTCCTCTAATGATCGTGAAAGTCATGCATTGTCAGCTGGTCT
GGCCCTTGGTATGATCATGATTGGTcAAGGGACAGACAACATGAAAATCT
TGGACTGGGATGTTTTCAACTTACTGTATAATTACATCAACCGTGGAAAG
AAAAATGAACTGatACCTGGTTACAATGATTCATCTCAACATCAAGGGAG
CTTTCAAATCTTTGAGGGAGATACAGTAAATACTGACGTCACTGCTCCAG
CTGCCATTATGGCATTGTCTTTGTTGTACCTCAAGACAAATAATCTCATG
GTAGCCAACTCCGTTAAGGTGATTGTATCGGAAGCTACAATGGATTCATT
GAAGCCTGACCACGTGCTGTATAGGATGCTATCGTTCAACTTGATCATGT
GGGATACTCTCGTACCTACCTTAGATTGGATGGAAGAAATTGTACCAGGG
TACGCTGAATTACTGGAATCTTTGCAAAGTGAATCATTTCTAATGATTGG
CTGGACACAAGAGTTGTATTACAGAATTTGCGCAATCAGTGGATCCTTCT
TGGCACTGTCTCTGAAGTTTGCAGCCAGTTGTAATGCTCATGCATTTAAC
ATGATGTTACCTTGGTTGAAGATAATTCGAAAGTTGCGCGAATCATCTTA
TTCAGAAGAAGTAAGTACA

Run BLAST on NCBI

transcript from alignment at sc0002039:25672..30816+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00039200 ID=TCONS_00039200|Name=TCONS_00039200|organism=Clytia hemisphaerica|type=transcript|length=5145bp|location=Sequence derived from alignment at sc0002039:25672..30816+ (Clytia hemisphaerica)
TActtaataaaatgaaatattccaagttgaATGCGAGTCACTCAGGATTT
CTTTTCGCACTCGGATTGATGGGCCATTTTGTCGTCACTTCCCAAACTTC
ACCTCCATGACTATCTTATAAAGGTATACTTATATTATTGTTAATTATTA
GCAAGCTTAGACAATAAGAGAATGTTTTATACTAAATTTCAGGGCCTTTA
TAACAAACATAGTTATAATTTAAGTTAAAATTAACTTaccatctttttta
tttcaaaggttAAGCGTTCTTTCGGTTGGTCAGTTATCCTATACTAAAAG
TTTCAAAGAAATTTCGAATATCTCGGGACAGACTGATTATGCATTTTAAT
ATTCAGTTCACACTTAGGTCATTAACTTCATCTATCAACTATTTTAGGGG
CATGCGTTGACAACTGTTGCTCTACTCATCGGAACAGCTGCAACGAAGTA
AGTCTCTTGATTGTAAATACTTGACTTAAACTTGATGATGGTAAATATTA
GGTTCCATTTATCTGACCCAAAAAAACTTGAAAGCCTTTAGAAAGAGAGT
AAAAAATCCTTCACATTAACGAAACCGACAGGAAGGAGTTCACTTCCTGA
CAAAACCTACACAATTACGTAGATAAGAAAAAGGGTAGGTTTGAGTaaaa
aatcgaaagaaaaagaaaatttagccTTTCCTTGACATGCATTGATGTTC
TTTTAGAATCGGTACGAAAAATACGGACGCATATAAACTGCTATGTTTGC
ATTTGGATTCCCTATTCCCGCCTACAGTATTGGAGCTCAAAATCCCACGG
ATCAGTCAGACGGCTTCCGCTCTATCGCTAGGTCTCCTCTTCTTCGGTAC
GGGAGATCTTCACTTGGTGAAAATTCTTCTACGTGAGATCGGAAAACCAC
CTGGTGTAGAGATCGATTCCTCTAATGATCGTGAAAGTCATGCATTGTCA
GCTGGTCTGGCCCTTGGTATGATCATGATTGGTGTAAGTGTTCCTATTCA
TTAGCGACTGTATCATGaaggttcgatccccagccgggccataccaaaat
ggtacttgatgcctctctgcttgatgctcagcaactataTAGATGGATCA
AGGggaagtggagaaatccagggaaaagagtggcgcccttctctaccttc
gggtaggcagctagagaaaagggagcATTCGGGTCATCCTCGACTGCGGT
CGTAAACTtactttacttacttacttacctaTTCTTTATATCGCATCTAT
CGCTATTGTGGCCGAGTAGCTCAGCAAGTAGAGTAATCGCCTTCAATTTC
AaagttgtgggttcgatccctggTCACCACCAACTCAGCGAACGAGTAAC
CTAGATTGGGTAAtcttttcaccagatagttccTTGAGGTTTGGACCatt
ttggaaccagctcagtcccgTGAGGAGTTCACTTTTTATTCAACAGTAAA
CGTCAAAAATAAATAACGTTTTCAAAACTAAAGGTCAAGACGACTAGGAC
AAACCGCCACCTACAGTCAATTTGTTTTTCCTAGAATGCTGTGATGCGTG
TATGTATTCATCTCTTatttcttgttttattttttcaatagcAAGGGACA
GACAACATGAAAATCTTGGACTGGGATGTTTTCAACTTACTGTATAATTA
CATCAACCGTGGAAAGAAAAATGAACTGGTAATAAGAAAACTTCTATTGA
AGTTATAGTCCATATACGCTCCTATCCAATTCTGCTTGATTTGGACTCGA
TCTAAAGGAGCTAAAAACTCACAAAATCCAAAGCTTACACTTTTCATACA
TCAGTATTTTCAGCATCTTGaaatctttatattttcttactaGTCTAATT
TCTGGTCTTCATCAAACCATTGTTTGAAGTAAGTTTTCAGCCTCTTACAA
CCGCTACTTTAATTGgacaaattttcgcggttgagctcatccatccattt
catgtttttctttttactgcCAACTTATGCACACTGGatgttgaaatacg
cattattagcgctttTTTATGCAAGTTAACATTTTGAAAGTAGTTATTTG
gctatttttttagttttgtttaaaagatttcgCGGATAAGAGCTTTCCAA
ATTTCTATttggacttaatttcgcggacgATACCCAAGTATCCCaatgac
ttttttgtaatttagatACCTGGTTACAATGATTCATCTCAACATCAAGG
GAGCTTTCAAATCTTTGTAAGTCTCTCTTAGAAtatgaaattatattaga
tatagGGCTGGACTTCTTGGTTTACCGTCACCCGATGGATCTGTCATCAT
ATTACTCGCCATCTAAGCTATTAAACAGCCATTCATTACCGTGATGTTTA
ACTAATACTTTCAGGAGGGAGATACAGTAAATACTGACGTCACTGCTCCA
GCTGCCATTATGGCATTGTCTTTGTTGTACCTCAAGACAAATAATCTGTA
AGCGTTGTTGTGTTATACTCTAGTAAATTATACTCTACTTCTTCCGATTT
TGTTTAAGTTCAATTACAACGCGATTTCAAGCTAATCCATGAAAAAGGTC
TAATGCAATTTTTTATGCTAGCTCAAAGTCTTATTTTATTGTTCACAGAT
TTAGCCAATCTTTGCATAGAATTAGGTCGGCTATAATGTGAGTGCAATAT
CCGCCTCAGTCTCGTGAAATACAGAATTACGAACGTTGATTGTTTATAAA
TACGCACCAATTGATAATAAATGACTACCTATACTAACTATACTGTAATT
CTATGTATTCTTTTAGCATGGTAGCCAACTCCGTTAAGGTGATTGTATCG
GAAGCTACAATGGATTCATTGAAGCCTGACCACGTGCTGTATAGGGTAAG
AGTGAGGTCCATTTGACAGTCGGCGTCTGTTTTCGGCAAGTCTAAAGCTA
TGACTAACTTCTATTATGCGCTTATCGAACCCCCCTCCAATCAATAGCGT
CATCGCTGAATCGAGGTTAGTTTTACGATTTCAATGAAAACTCCCAGGGA
GTTTTGTTTGTCTGGCGGATATAAGACCTAAGCACGGCTCCTGAATTGAA
GATAGACACTAAGTGCATTTCAAAAAACAGATAGCCTCCCCTATTCCTag
taactttttggaaaaaaaaacttgcTGTTGTCTTTTCAACCAAGAAGAGC
TCGATAGAAGCTACAAAAGAATCCTTACTACTTTTgagatttattttact
ttatttattGTAGATGCTATCGTTCAACTTGATCATGTGGGATACTCTCG
TACCTACCTTAGATTGGATGGAAGAAATTGTACCAGGGGTGAGATATTAC
GTATCCATTTTGTGAGTTTGTGTACTACAAACTCTAAAGACTTGGGGACA
ATTACTAGCCCCTCCTTACCAAGGCGTTCAAGCTGCGTAGACTCGATTGT
AATTACAGTCAACCCTCCCTAAATCGAATCCCAACTATTCGAATTttcct
gtaattcgaactaaaacatcgGTCCTCTCATCTGGGGAGTGGTATAAATT
ACCCTCTGTAATCCGAATTTGtctataattcgaagaaagTTTTCAGTCAA
CTGTACGTACTCTTTTCTTGAGTTTCATTTGATGTTTGTAGCTCGAACGA
TCAATGGTTCTTGTTTGGATTTAGAGTTGTGGAGAATATAAATGGATTGC
GTTccagttttttttcacgaatTTTGCTCGATTTGTGTTTAATTTCTGTG
TTACTTAATCATCACTGTTTACAATAATCGTTTCTTTATTCATTCCTAGT
ACGCTGAATTACTGGAATCTTTGCAAAGTGAATCATTTCTAATGATTGGC
TGGACACAAGAGTTGTAAGTCTGTCCTTCTTTGATCGATTCAAGGTTCAC
GCACTTTAAATGgtcttttctttttgcttgtttGAGTATAAGACTTGCAA
AGTATTCTTTTTGGAcctggaggtcctttaatttaacCTTCTTTCGTCCG
TCCGTTAAAATGTATTATTTAAAATCTGGAGCCTGATTTTCCAAAGACAT
TCTTTCTGGCAAAGTCTCAAAATCCTTTCTAGCTTCTAACCCATCGCATG
CGGCTGCATCCCACGAAAGAGGCTACGGATACTAACGATTGCCCACCTAC
CATATAATGGCGAAAATTATACAACTTAATTAAAGAAACATATAAAAACC
AAAACTGAATTACTTCATAGGTATTACAGAATTTGCGCAATCAGTGGATC
CTTCTTGGCACTGTCTCTGAAGTTTGCAGCCAGTTGTAATGCTCATGCAT
TTAACATGATGGTAAGATATAGAAACTATAACTAAACCTTTTTCATCACT
CTAGAGATTTACAGCCCCCTCTTTCCGTTTTTGGAAAGGTGTCACAAAGG
GTTCGATCTTTGAAAAAACTACCCTTGTCAATTTATAATGACCAACCTTT
GTGACGAAACAATTTCAtgaactacatgtttttttataagcatacaaata
TTCAAAAGCAGACGCGGAGATGCTTGGATTGAGGGCTTGACAAGGCTTAC
AAGGATGCTTATATCTCAAGCAAAATGTTAGgaaaattccgaaaaaaatC
CGTAAATTCGTCCGgccaaaaacagccaaaatcagaaaaaacatttttcg
tagccTCAGGTAATGCTTACAACccattcgattgacttcaaaatattgct
attttttgccaattattttgcattcaattgacaaaaatttggcaaatctt
ttgacattgaagttgtggatttggcaaagttggtaagtatggcaaatttt
gaagtcaatcgaattggctgttaGTATATGCTTAACATGTATATCAATAT
CATTTGTTTGTTTAGTCTGCAGGTGATACCCTGTGGGGTCGGCACCCATG
GTAAGAAGTGGTTTGTGATCAGATCCATGCAACAACAAACATTTGTTTCA
TAGATTAATTGTAGGGCTTATAgcagtgaaaaatattttgactactttgt
tattattttatCTTTGGCATGTCATCTTTTAAATGGAATGTCCCTCTCCC
AGGGAAGGAGAGCAACACGATTTTCCAGTTTGCCGAGCATTTCTTTGTTA
AtggtttgttgatttttttttttcattaccaGTTACCTTGGTTGAAGATA
ATTCGAAAGTTGCGCGAATCATCTTATTCAGAAGAAGTAAGTACA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_023616	XLOC_023616	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002039	supercontig	sc0002039:25672..30816 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.714521	0.788082	0.384937	0.992948	0.9845	0.141329	0.0721589	0.895098	0.671463	0	1.37167	0	0	0	0	0	0	0	0.107709	0.73154	0.572274	1.1325	0.595737	0	0	0	0.58426	0.921736	0.433507

Blast

[Close]

BLAST of TCONS_00039200 vs. Swiss-Prot (Human)
Match: APC1 (Anaphase-promoting complex subunit 1 OS=Homo sapiens GN=ANAPC1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 7.616e-39
Identity = 85/234 (36.32%), Postives = 132/234 (56.41%), Query Frame = 2

Query:  182 FFGTGDLHLVKILLREIGKPPGVEIDSSNDRESHALSAGLALGMIMIGQGTDNMKILDWDVFNLLYNYINRGKKNELIPGYNDSSQHQGSFQIFEGDTVNTDVTAPAAIMALSLLYLKTNNLMVANSVKVIVSEATMDSLKPDHVLYRMLSFNLIMWDTLVPTLDWMEEIVPGYAXXXXXXXXXXFLMIGWTQEL----YYRICAISGSFLALSLKFAASCNAHAFNMMLPWLK 871
            + GT   H  ++LL EIG+PPG E++   DRES++L+AGLALGM+ +G G++ + + D +V   LY Y+  G +     G +       S+QI EGDT+N DVT P A +AL+++YLKTNN  +A+ ++   +   +D +KP+ +L R L+  LI+WD ++P   W++  VP          SE  L       L       +  I+G+ L+L  +FA S N  AFN +  + K
Sbjct: 1261 YQGTAHRHTAEVLLAEIGRPPGPEMEYCTDRESYSLAAGLALGMVCLGHGSNLIGMSDLNVPEQLYQYMVGGHR-RFQTGMHREKHKSPSYQIKEGDTINVDVTCPGATLALAMIYLKTNNRSIADWLRAPDTMYLLDFVKPEFLLLRTLARCLILWDDILPNSKWVDSNVPQIIRENSISLSEIELPCSEDLNLETLSQAHVYIIAGACLSLGFRFAGSENLSAFNCLHKFAK 1493

The following BLAST results are available for this feature:

BLAST of TCONS_00039200 vs. Swiss-Prot (Human)

BLAST of TCONS_00039200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
APC1	7.616e-39	36.32	Anaphase-promoting complex subunit 1 OS=Homo sapie...	[more]

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TCONS_00039200 (transcript) - C. hemisphaerica