TCONS_00024504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024504
Unique NameTCONS_00024504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1014

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024504 ID=TCONS_00024504|Name=TCONS_00024504|organism=Clytia hemisphaerica|type=transcript|length=1014bp
gtttatttaatttttaccactttcacaaaaattcaaaaaattacaaagaa
aaaaattacagaaattacttATTGACACTAGTATCGTGATCCAAAAAtcc
gaaaatctaacaaaaattacaaaaattacacACGACAATAATCAAACTTT
ACAATCTTTTAGTTATGTTtctttgaaagtttcaaaaggTTCAAATGTTT
CTCAAACCAGCTCTCTTTGTCATTTCCGAAGCGTAGAAATCTAACATCTC
CGAAAATGGATCTCTTTTTGCTTCACGACACACATATTTTGGGCTCGAGA
AACTTCCTTCGTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCT
TCACGGCAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTTCCCAGTGG
AATACAGCTTCCTCTTCTTGTAAATTGACCACGGTAGTAATCACTTAAGG
GATCTCTTTTTGCTTCACGACAAACATATTTTGGGTTCGAGAAACTTCCT
TCGTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCTTCACGGCA
ACATCTCCCATTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGAATACAGC
TTCGTCTTCTTGTAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTT
TTTGCTTCACGACAAACATATTTCGGGTTCGAGAAACTTCCTTCGTTGAC
ACATATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATTTTCTCATTGA
GCCAGTATATGGATTTCCTTCACGACAACATCTCCCATTGTTTCCCTCAC
AGCCAGCGTTACCCAGTGGAACACAGCTTCCTTGTACTTTTTCAAAAGCC
AAAAGTGCGAAAAGTATCGTCAGTAACATTGTCTTCATCTTCATATAATT
TAAAACCTATAAAGaataattgacatttttcataaTAATCCTTAAACTGT
GTTACAAACAGTACATTTGATTAAACAACGGTGATATATTGCTATAACAA
GAAGGTGAGAGACT
Run BLAST on NCBI

transcript from alignment at sc0000501:71031..72585+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024504 ID=TCONS_00024504|Name=TCONS_00024504|organism=Clytia hemisphaerica|type=transcript|length=1555bp|location=Sequence derived from alignment at sc0000501:71031..72585+ (Clytia hemisphaerica)
gtttatttaatttttaccactttcacaaaaattcaaaaaattacaaagaa
aaaaattacagaaattacttATTGACACTAGTATCGTGATCCAAAAAtcc
gaaaatctaacaaaaattacaaaaattacacACGACAATAATCAAACTTT
ACAATCTTTTAGTTATGTTtctttgaaagtttcaaaaggTTCAAATGTTT
CTCAAACCAGCTCTCTTTGTCATTTCCGAAGCGTAGAAATCTAACATCTC
CGAAAATGGATCTCTTTTTGCTTCACGACACACATATTTTGGGCTCGAGA
AACTTCCTTCGTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCT
TCACGGCAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTTCCCAGTGG
AATACAGCTTCCTCTTCTTGTAAATTGACCACGGTAGTAATCACTTAAGG
GATCTCTTTTTGCTTCACGACAAACATATTTTGGGTTCGAGAAACTTCCT
TCGTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCTTCACGGCA
ACATCTCCCATTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGAATACAGC
TTCGTCTTCTTGTAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTT
TTTGCTTCACGACAAACATATTTCGGGTTCGAGAAACTTCCTTCGTTGAC
ACATCTTCTCATTGAGCCAGTATAGGGATTCCCTTCACGACAACATCTCC
CGTTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGAATACAGCTTCCTCTT
CTTGTAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTTTTTGCTTC
ACGACACACATATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATCTTC
TCATTGAGCCGGTATAGGGATTCCCTTCACGGCAACATCTTCCATTGTTT
CCCTCACAGTCAGCGTTTCCTAGTGGAATACAGCTTCCTCTTCTTGTAAA
TTGGCCACGGTAGTAATCACTTAAGGGATCTCTTTTTGCTTCACGACACA
CATATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAG
CCAGTATAGGGATTCCCTTCACGACAACATTTCCCATTGTTTCCCTCACA
GCCAGCGTTTCCCAGTGGAATACAGCTCCCTCTTCTTGCAGATTGGCCAA
GGTAGTAATCACTTAAGGGATCTCTTTTTGCTTCACGACACACATATTTT
GGGCTCGAGAAACTTCCTTCGTTGACACATTTTCTCATTGAGCCAGTATA
TGGATTTCCTTCACGACAACATCTCCCATTGTTTCCCTCACAGCCAGCGT
TACCCAGTGGAACACAGCTTCCTTGTACTTTTTCAAAAGCCAAAAGTGCG
AAAAGTATCGTCAGTAACATTGTCTTCATCTTCATATAATTTAAAACCTA
TAAAGaataattgacatttttcataaTAATCCTTAAACTGTGTTACAAAC
AGTACATTTGATTAAACAACGGTGATATATTGCTATAACAAGAAGGTGAG
AGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013763XLOC_013763Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024504-exon-sc0000501-1491911889:71031..71732TCONS_00024504-exon-sc0000501-1491911889:71031..71732Clytia hemisphaericaexon
TCONS_00024504-exon-sc0000501-1510915933:71031..71732TCONS_00024504-exon-sc0000501-1510915933:71031..71732Clytia hemisphaericaexon
TCONS_00024504-exon-sc0000501-1575043694:71031..71732TCONS_00024504-exon-sc0000501-1575043694:71031..71732Clytia hemisphaericaexon
TCONS_00024504-exon-sc0000501-1491911889:72274..72585TCONS_00024504-exon-sc0000501-1491911889:72274..72585Clytia hemisphaericaexon
TCONS_00024504-exon-sc0000501-1510915933:72274..72585TCONS_00024504-exon-sc0000501-1510915933:72274..72585Clytia hemisphaericaexon
TCONS_00024504-exon-sc0000501-1575043694:72274..72585TCONS_00024504-exon-sc0000501-1575043694:72274..72585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000501supercontigsc0000501:71031..72585 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61437e-06	0	0.00145882	1.938e-06	0	0.000606618	1.55811e-06	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1.55198	0	0	0	0.445163	0.524127	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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