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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024502 ID=TCONS_00024502|Name=TCONS_00024502|organism=Clytia hemisphaerica|type=transcript|length=1403bp
AAGaggtttatttaatttttaccactttcacaaaaattcaaaaaattaca
aagaaaaaaattacagaaattacttATTGACACTAGTATCGTGATCCAAA
AAtccgaaaatctaacaaaaattacaaaaattacacACGACAATAATCAA
ACTTTACAATCTTTTAGTTATGTTtctttgaaagtttcaaaaggTTCAAA
TGTTTCTCAAACCAGCTCTCTTTGTCATTTCCGAAGCGTAGAAATCTAAC
ATCTCCGAAAATGGATCTCTTTTTGCTTCACGACACACATATTTTGGGCT
CGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAGCCGGTATAGGGAT
TCCCTTCACGGCAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTTCCC
AGTGGAATACAGCTTCCTCTTCTTGTAAATTGACCACGGTAGTAATCACT
TAAGGGATCTCTTTTTGCTTCACGACAAACATATTTTGGGTTCGAGAAAC
TTCCTTCGTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCTTCA
CGGCAACATCTCCCATTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGAAT
ACAGCTTCGTCTTCTTGTAAATTGGCCACGGTAGTAATCACTTAAGGGAT
CTCTTTTTGCTTCACGACAAACATATTTCGGGTTCGAGAAACTTCCTTCG
TTGACACATATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATCTTCTC
ATTGAGCCGGTATAGGGATTCCCTTCACGGCAACATCTTCCATTGTTTCC
CTCACAGTCAGCGTTTCCTAGTGGAATACAGCTTCCTCTTCTTGTAAATT
GGCCACGGTAGTAATCACTTAAGGGATCTCTTTTTGCTTCACGACACACA
TATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAGCC
AGTATAGGGATTCCCTTCACGACAACATTTCCCATTGTTTCCCTCACAGC
CAGCGTTTCCCAGTGGAATACAGCTCCCTCTTCTTGCAGATTGGCCAAGG
TAGTAATCACTTAAGGGATCTCTTTTTGCTTCACGACACACATATTTTGG
GCTCGAGAAACTTCCTTCGTTGACACATTTTCTCATTGAGCCAGTATATG
GATTTCCTTCACGACAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTA
CCCAGTGGAACACAGCTTCCTTGTACTTTTTCAAAAGCCAAAAGTGCGAA
AAGTATCGTCAGTAACATTGTCTTCATCTTCATATAATTTAAAACCTATA
AAGaataattgacatttttcataaTAATCCTTAAACTGTGTTACAAACAG
TACATTTGATTAAACAACGGTGATATATTGCTATAACAAGAAGGTGAGAG
ACT Run BLAST on NCBI transcript from alignment at sc0000501:71026..72585+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024502 ID=TCONS_00024502|Name=TCONS_00024502|organism=Clytia hemisphaerica|type=transcript|length=1560bp|location=Sequence derived from alignment at sc0000501:71026..72585+ (Clytia hemisphaerica)
AAGaggtttatttaatttttaccactttcacaaaaattcaaaaaattaca
aagaaaaaaattacagaaattacttATTGACACTAGTATCGTGATCCAAA
AAtccgaaaatctaacaaaaattacaaaaattacacACGACAATAATCAA
ACTTTACAATCTTTTAGTTATGTTtctttgaaagtttcaaaaggTTCAAA
TGTTTCTCAAACCAGCTCTCTTTGTCATTTCCGAAGCGTAGAAATCTAAC
ATCTCCGAAAATGGATCTCTTTTTGCTTCACGACACACATATTTTGGGCT
CGAGAAACTTCCTTCGTTGACACATCTTCTCATTGAGCCGGTATAGGGAT
TCCCTTCACGGCAACATCTCCCATTGTTTCCCTCACAGCCAGCGTTTCCC
AGTGGAATACAGCTTCCTCTTCTTGTAAATTGACCACGGTAGTAATCACT
TAAGGGATCTCTTTTTGCTTCACGACAAACATATTTTGGGTTCGAGAAAC
TTCCTTCGTTGACACATCTTCTCATTGAGCCGGTATAGGGATTCCCTTCA
CGGCAACATCTCCCATTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGAAT
ACAGCTTCGTCTTCTTGTAAATTGGCCACGGTAGTAATCACTTAAGGGAT
CTCTTTTTGCTTCACGACAAACATATTTCGGGTTCGAGAAACTTCCTTCG
TTGACACATCTTCTCATTGAGCCAGTATAGGGATTCCCTTCACGACAACA
TCTCCCGTTGTTTCCCTCACAGTCAGCGTTTCCTAGTGGAATACAGCTTC
CTCTTCTTGTAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTTTTT
GCTTCACGACACACATATTTTGGGCTCGAGAAACTTCCTTCGTTGACACA
TCTTCTCATTGAGCCGGTATAGGGATTCCCTTCACGGCAACATCTTCCAT
TGTTTCCCTCACAGTCAGCGTTTCCTAGTGGAATACAGCTTCCTCTTCTT
GTAAATTGGCCACGGTAGTAATCACTTAAGGGATCTCTTTTTGCTTCACG
ACACACATATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATCTTCTCA
TTGAGCCAGTATAGGGATTCCCTTCACGACAACATTTCCCATTGTTTCCC
TCACAGCCAGCGTTTCCCAGTGGAATACAGCTCCCTCTTCTTGCAGATTG
GCCAAGGTAGTAATCACTTAAGGGATCTCTTTTTGCTTCACGACACACAT
ATTTTGGGCTCGAGAAACTTCCTTCGTTGACACATTTTCTCATTGAGCCA
GTATATGGATTTCCTTCACGACAACATCTCCCATTGTTTCCCTCACAGCC
AGCGTTACCCAGTGGAACACAGCTTCCTTGTACTTTTTCAAAAGCCAAAA
GTGCGAAAAGTATCGTCAGTAACATTGTCTTCATCTTCATATAATTTAAA
ACCTATAAAGaataattgacatttttcataaTAATCCTTAAACTGTGTTA
CAAACAGTACATTTGATTAAACAACGGTGATATATTGCTATAACAAGAAG
GTGAGAGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024502-exon-sc0000501-1491911889:71026..71732 | TCONS_00024502-exon-sc0000501-1491911889:71026..71732 | Clytia hemisphaerica | exon |
| TCONS_00024502-exon-sc0000501-1510915933:71026..71732 | TCONS_00024502-exon-sc0000501-1510915933:71026..71732 | Clytia hemisphaerica | exon |
| TCONS_00024502-exon-sc0000501-1575043694:71026..71732 | TCONS_00024502-exon-sc0000501-1575043694:71026..71732 | Clytia hemisphaerica | exon |
| TCONS_00024502-exon-sc0000501-1491911889:71890..72585 | TCONS_00024502-exon-sc0000501-1491911889:71890..72585 | Clytia hemisphaerica | exon |
| TCONS_00024502-exon-sc0000501-1510915933:71890..72585 | TCONS_00024502-exon-sc0000501-1510915933:71890..72585 | Clytia hemisphaerica | exon |
| TCONS_00024502-exon-sc0000501-1575043694:71890..72585 | TCONS_00024502-exon-sc0000501-1575043694:71890..72585 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000501 | supercontig | sc0000501:71026..72585 + |
Blast
The following BLAST results are available for this feature:
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