TCONS_00024420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024420
Unique NameTCONS_00024420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024420 ID=TCONS_00024420|Name=TCONS_00024420|organism=Clytia hemisphaerica|type=transcript|length=421bp
CTGCGTTATACCATGGGTCTGCTTTGTACACTTTAATGTTCTGGAAATAT
CTCGGAGTCTTGTTCTCCACGTTTGCTAATAGTTTGCCGTTCACATAAAC
TCTATACATATATTTCGTTGGAATATTGCTGGGATATTGGCTAATCGTGA
CATAAGAATATTTGTGAAGAGGCAAGGCAGCACTGTTAACACACCAGTTG
TTACTGTTATGTAAACTTGTACAAATATGAAGTATTGAGGTGTGTGGCAT
GATAAAAACTGCTGGTACTCTACGGCCGTGAGCTCCCAAGTTCCCACCAG
TTGTAAAATGTAAGATACTGGTCCAATGGTTGACGATGTAGAGTGGTTTG
ATTTGAAACGTTATTGAATAAGCTGGTGACCAGGTCTCGAAAGCGTCGTG
GATGAAATTTTTTCGAAGTGT
Run BLAST on NCBI

protein sequence of TCONS_00024420-protein

>TCONS_00024420-protein ID=TCONS_00024420-protein|Name=TCONS_00024420-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
TLRKNFIHDAFETWSPAYSITFQIKPLYIVNHWTSILHFTTGGNLGAHGR
RVPAVFIMPHTSILHICTSLHNSNNWCVNSAALPLHKYSYVTISQYPSNI
PTKYMYRVYVNGKLLANVENKTPRYFQNIKVYKADPWYNA
Run BLAST on NCBI

transcript from alignment at sc0000491:5845..6265

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024420 ID=TCONS_00024420|Name=TCONS_00024420|organism=Clytia hemisphaerica|type=transcript|length=421bp|location=Sequence derived from alignment at sc0000491:5845..6265 (Clytia hemisphaerica)
ACACTTCGAAAAAATTTCATCCACGACGCTTTCGAGACCTGGTCACCAGC
TTATTCAATAACGTTTCAAATCAAACCACTCTACATCGTCAACCATTGGA
CCAGTATCTTACATTTTACAACTGGTGGGAACTTGGGAGCTCACGGCCGT
AGAGTACCAGCAGTTTTTATCATGCCACACACCTCAATACTTCATATTTG
TACAAGTTTACATAACAGTAACAACTGGTGTGTTAACAGTGCTGCCTTGC
CTCTTCACAAATATTCTTATGTCACGATTAGCCAATATCCCAGCAATATT
CCAACGAAATATATGTATAGAGTTTATGTGAACGGCAAACTATTAGCAAA
CGTGGAGAACAAGACTCCGAGATATTTCCAGAACATTAAAGTGTACAAAG
CAGACCCATGGTATAACGCAG

Coding sequence (CDS) from alignment at sc0000491:5845..6265

>TCONS_00024420 ID=TCONS_00024420|Name=TCONS_00024420|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000491:5845..6265 (Clytia hemisphaerica)
ACACTTCGAAAAAATTTCATCCACGACGCTTTCGAGACCTGGTCACCAGC
TTATTCAATAACGTTTCAAATCAAACCACTCTACATCGTCAACCATTGGA
CCAGTATCTTACATTTTACAACTGGTGGGAACTTGGGAGCTCACGGCCGT
AGAGTACCAGCAGTTTTTATCATGCCACACACCTCAATACTTCATATTTG
TACAAGTTTACATAACAGTAACAACTGGTGTGTTAACAGTGCTGCCTTGC
CTCTTCACAAATATTCTTATGTCACGATTAGCCAATATCCCAGCAATATT
CCAACGAAATATATGTATAGAGTTTATGTGAACGGCAAACTATTAGCAAA
CGTGGAGAACAAGACTCCGAGATATTTCCAGAACATTAAAGTGTACAAAG
CAGACCCATGGTATAACGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013703XLOC_013703Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024420-exon-sc0000491-1491911889:5845..6265TCONS_00024420-exon-sc0000491-1491911889:5845..6265Clytia hemisphaericaexon
TCONS_00024420-exon-sc0000491-1510915933:5845..6265TCONS_00024420-exon-sc0000491-1510915933:5845..6265Clytia hemisphaericaexon
TCONS_00024420-exon-sc0000491-1575043694:5845..6265TCONS_00024420-exon-sc0000491-1575043694:5845..6265Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024420-proteinTCONS_00024420-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000491supercontigsc0000491:5845..6265 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.37896	0.185376	0	0	0	0	0	0.698708	0.169546	0	295.683	385.24	265.564	440.462	128.77	144.417	1.60105	1.30308	0	0	0.191878	0	0	0.160355	0.229467	0	0.185743	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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