TCONS_00024367 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024367
Unique NameTCONS_00024367
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024367 ID=TCONS_00024367|Name=TCONS_00024367|organism=Clytia hemisphaerica|type=transcript|length=2519bp
gAACGTTTCACCTCCATTCCAGCTGATAATTAACAGTATAAAAAGAACAG
AACATACTCAAGAACAATTTAATCTGGATACTCGAGTGATCGATATACAA
TCAAGAAGAATTTCAACTAACTAAAAGCTTTTTGTAGCAAAATGGGTGTA
CCAAAATGTTTACAAATGTCACACAGAACTTCATTTATTTCCATGATTAT
TTTAACTCTAACTTTCTTTTTTGTGGAGATCATCGTTGGGTATGCTACAA
ATTCGATGGCTCTCGTCGCCGACAGTTTCCACATGTTGTCCGACGTTGTT
TCTCTATTTGTCGGATTCATGGCGCTACGTTATTCAAAGATCAATAAGCA
AAACGGGCGCTATACTTTCGGATGGGCGCGTGCTGAAGTATTAGGAGCAC
TCGTAAATGCCGTTTTTCTGGTCGCGTTGTGTTTTTCGATTTTCGTTGAA
GCTCTTAAACGCATCATAATCCCTGAAGCCATTGATAACGCGAAACTGGT
TCTCATAACGGGTGCAATCGGGTTATTCGTAAATATAATCGGTTTATTCT
TATTTCATCAAACGGGGCACGGACATTCTCATGGTGGAGGTGGACATGGA
CATTCACATGGTGGTGGTCATGGTCACTCCCATCAGGCGCCCAAACAGAA
ACACGTGCATGCGAATGGACACTCTCACGGAGATAAACCGTTAGCGACTC
CTTTGTTGGGTAAAGAAGACAATGTGACCATGGACAATGGATCTGTCGGA
AGAGATGATGTGGATAAACAAGTAGTAACGCTAAACGACCAATCAGCGTC
GTCTTCAGAAGAGAGCGTGTCATCATCAGCACCCAAAACTTCCTCACAAC
TTAATATTCGTGGTGTTTATTTACACGTGTTGGGTGACGCCCTGGGCTCG
GTGATTGTCATGATCAGTGCTCTCATCATCTTATACGCTAACGGCACTTG
GATCGAATATGTGGACCCTTCAATGAGTATCATGCTAGTGCTTATCATTT
TGAAGACTTCAATCCCATTGCTAAAAGAATCATCGATGATTTTGATGCAG
ACAGTACCGACACatttaaaaattcaagaaatgcAGGACCGATTGATTGA
TCAAATACCTGGTGTGGTCAGCGTCCATGAATTTCATGTCTGGCAACTGG
CTGGAAGTAAAATTATCGCTTCTGCACATGTCCGTTGTAACACCTTAGAA
GATTACATGGCTATTGCCAACCAGTTGAAAGAGTTCTTCCATAATGAAGG
AATACACTCAACCACCATTCAACCCGAGTTCGTCGAGAAACCTGAAAATC
TAGACGAAATTGAAGGGAATGGTGTTGTTTTAAGAGACTGTGTACTAGAG
TGTGATCCTGACTGCGCAGAGCGCATGTGTTGTACAACAAATAGCCAATC
AGAAAACAATACCACAATAAATGATAAGAAAGAAATAGTTGTTGtggaaa
tcgaaaaaacacTTACGCCGACAGAACCACAGATAAATGGGAATGCTCGT
AATGTGTAATGGTGTATGATTGATAGAGAATGAATATGGGTATCGGCTCA
CTTGAAAGATCATGTCTGNCATGGGAATGCTCGTAATGTGTAGGCTTGTA
GACTAAAGCAATGGTGAtgtatgattgataaaaaaatcaatatggGTATT
GGCTCAGTCACTTGAAAGATCAAGTCTGCAAATGGAATCCTCCGGTAAAA
ACTTGCTTATGTTGAAAGGATCCATATTTTGGGATGTACGTTTAACCAAA
TGTCAAACATTACAACTACGGAATTCCATGTTGAGCTTAAATTacagatt
tttcactaaaaacgTTCTATTGGTTCTTTTCACTTTGATATAGACGATGT
ATCGTCCGTTAGAGGGTCAGTAGTAAAAGCGGGAAAACATATATGCGCAG
AGTCAGGGCATGAGAGTGGTTtgcgggaaaaaagtggcggtagccACTGC
TTTCTCCGCCCCGCGCTAACCAcaccgttttcaaatttatcccgcctcCT
AAACTATTTCCTTTTTCAGTGATTTTGTGTAGATGATAGGATCGTCTAAC
TTTATCGATTTGATGATCCCAGTCAGAATAGCAGAATATACTTTGATGCA
GGGATGGGTAAAATCTCACAcataaatttcaagaataaACCTGGGTTTAC
ACGGGGACGAGCTTGGTCACAAGTATTtccgtcataaatgatgacacGAG
AGTAAAGAAATATTGTAAAAATGACGTATAATTTTAGACATTTTCTCTCA
GGTTCACCCTGGGGCTGTCTTTATTTGGAAAGGGGTTGATCAGTTTCGTG
TGTTGCTTACACGAAACACAgttttttagttgaaaaatattttatttaga
tATCATCAtgtatttagtttttttaaatatttctcagttaaaattttgtt
ttttaaaatactcattgaaattttttgatagtTATACTTTGTTAAAAATC
AATTATAATCAAACAATATTGAAAGtcacaattttgaaaatcagaagaaa
aataatattagaATTCAGC
Run BLAST on NCBI

protein sequence of TCONS_00024367-protein

>TCONS_00024367-protein ID=TCONS_00024367-protein|Name=TCONS_00024367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
MGVPKCLQMSHRTSFISMIILTLTFFFVEIIVGYATNSMALVADSFHMLS
DVVSLFVGFMALRYSKINKQNGRYTFGWARAEVLGALVNAVFLVALCFSI
FVEALKRIIIPEAIDNAKLVLITGAIGLFVNIIGLFLFHQTGHGHSHGGG
GHGHSHGGGHGHSHQAPKQKHVHANGHSHGDKPLATPLLGKEDNVTMDNG
SVGRDDVDKQVVTLNDQSASSSEESVSSSAPKTSSQLNIRGVYLHVLGDA
LGSVIVMISALIILYANGTWIEYVDPSMSIMLVLIILKTSIPLLKESSMI
LMQTVPTHLKIQEMQDRLIDQIPGVVSVHEFHVWQLAGSKIIASAHVRCN
TLEDYMAIANQLKEFFHNEGIHSTTIQPEFVEKPENLDEIEGNGVVLRDC
VLECDPDCAERMCCTTNSQSENNTTINDKKEIVVVEIEKTLTPTEPQING
NARNV
Run BLAST on NCBI

transcript from alignment at sc0000489:124990..134987-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024367 ID=TCONS_00024367|Name=TCONS_00024367|organism=Clytia hemisphaerica|type=transcript|length=9998bp|location=Sequence derived from alignment at sc0000489:124990..134987- (Clytia hemisphaerica)
GAACGTTTCACCTCCATTCCAGCTGATAATTGTAAGGTTTCTTGCTTGCA
AGTGGTTTTTTGCTACTCAGGTTTTTAAAACTTCTAACTAATAATAGTTT
TTTTTATCGATGTAAATGTTTTCTTTAGTGAAGTGAAATACCTCTATTCT
CTCTACACGTTTTTTAATAAGAACAAACTATATAAGAACATAAGGCTTCC
GTGGCCAAAATGTTAAGAATAAGTTAAGAACATTTTAAGGCTTTGTGGAC
TCAAAAACACCCTATTTCTTAGGAAAGTGGTCAAAAATATTCATAAAATG
GTGAAAATAAGAACATGTTAAGAACATTTTTAGGCTAAAACTCAAAAAGT
TAAGAACACCCGAAGGCTTCGAAAATTTTGCATGTTCTTATAAGTAAGCC
ATCGATCCATCAATCCAAGTCAATACAACCTTAGAAGTTGAAGGTTGATA
TTGCAATATTCTTTCTTTGAATTCTGTTCAGAGTATTGCCTTTGTTTTTT
TTTCTATAAGCGTAACGTTATAACCATTCGCTGGCTCAGTTTTTTTGTAC
CTAAACAATGGCTCTATTGTTTAAGAACAATCGAATACTTTAGTATCACG
TATAGGGGTAGACACTTACTCTTATGATAGATATAATCTTTCTTTGACCG
GCACTGGCAATAAACCTGTACTTAACCAGTTTATTCAAGTTGAACTTTGA
GTGCTTGACGCATTTTCACCATGTTGATTGCACTTTAGTAAGAGTGCATT
AAAAAAAACCGCGAAATTAATCTGTTACCAAATTTACACGAATTTTAATC
TATCAAGAGTAGGTCAATTGGCAACTGTGTTTTGTTTTGATTTTTTAAAG
GTAGTTCTTGAGCCTGAAAAATGACTTGTTGGGTGGTTGGTTCAATATGT
CAGAATTGAATGATAAGTTACAGTAAACTTTATATAATTCGAATCTCGAA
ACAAAACTTTAAGTTTAGAATCCCCCTTGAAATTCAAAATAGGGAACAAC
AGTCAATCTTTTTATAGGTTTTTTAATATTCGAGCTTTGGGGAGCTTAGG
TGGAAATCCTTAACATTAGTCATCCTGGATGGAAAGCTAGGACGAAACCG
GGCATTAGTCCTCTTGGATGGAAAGCCAAAACGGAAAATCTAATTTAATA
TCTTATTTTAGGCAATAATTACCGCTTTTGAACGTATAACGAAGCGTAAT
AAATTTTGAAATTTCCCTAGATATCGGGTCTGTTTTGATCTAACAGAATG
ATGTGTTTTCGGCTAAGGTGGATTTCTTGGCATTAGTCATTCTAGATGGT
AAACCAATAATTTAGAATCTCACCAATCTCACTTAATGACAAGAATCACC
ACTTTTGAACGTCTGAGAAAATTTTGAATTTAATTCGAATCTTATTGTTT
TCAACTTTTCTTTAAATATCTTTTTGTAGCTTTGACGTGTGCAAAAACTT
CATTTAGAACGTGTTGTTTTTCTCATTACCTTTTGAACAAGAGCTCTATG
GTGGCCCATAAGTGCCAAGTAATTTTTTATTGAAAATTTCAGAAAATTTT
TTTTTTATAAATGAAAATAACTTTCATTTTACAATTTAAATTAACTTTCA
TTTCAAAATCAATTTAAAAGTAATTTCGTTTTCAAAATGACTTAAAATAC
GACCCAGCAAGGCCACACAAATGATTTAAATTTTGTTTTAATTCTCATTT
ACTTTTCGATATCATTTTAAAAAGCATTTTGTTTTTTTATTTTTAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAGCTTTGTCTCCAGACCCCTACAGGCTTAAAAGATTGAAGTTACT
ATGGTTACTTATTGGTTTGTTTACAGTTCACGGCCCATCAAGGCCAAAAC
AACTTAGTTCTTAGACCCCAAACATATTTACAAATGTGTAGGAGAGTATA
AAACGATATCCTTTACTCCAGTGTTCTATGGTACCATAAATGAGAGATTT
TTTGTCCGTCACAGTGCTTTTCCTTTCATTGTTTGGCTGGTGGGTTGTAT
TGTCTTGAAAAATTTACTTCTTTTTGCAGACAAAATTATTCATCAAACAA
TGGGGAACATGAAGAGCCTTTGTTTTGATGTGTAAATAAAGAGTCGAATT
TTTTCTTAATATGCAGCATGCGAGTATGAAGGGAAAAATGTTGAGAAGAG
AGGAAATACACTTTTTTTATATAAGAACAATTTTATAAGAACAATGAGGC
TCAAAAATGCCAAAAAATAAGAACAATTTAAGAACAGTGGAGAGGCTGAA
GATAGAGAGTTATAGCAAAAAGAATACCTGGTTGCCCTGGTTTCTAAAAT
CCTCTAAATAATAAAGTAAATAGCCAAAACTTGTTTTTTACGTTGGAAAA
AGTAAGAACAATTCAAGGCCGAGCCTCAGCAAAAATTTACTGGTTCTTAT
AAAAAAAAGAGTGTAATAAGAGGGAAGTTTTATTTACTTGTAACCCCTTT
CATGTTGCCGCCATATGCTTTAATATTTTTGGCTCCGAGGAAACCCCAAT
GTGACCCCCCCCCTAAAACAAACAACTGGTTCGTTCTATTATCAAAAGAA
ACTTTATCTGTTGAAATTTACTCATTTCTATGAGTGGCCTCAATGGTTTG
TCAGATCAATTCATTTAAAAAAATTTAAAATTGATTTTAAAATGACATGG
CCTCGATGGGCTGAGTTGGAAATCGTTTTTGAAAACAAACCCGTTTTTAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTTAAATTAAAAGCTATTG
CAAAAATGAATGTGAAAAGTAAATTGTTTTGAATTTTTTTATAGAAATGT
CAAAACAATTTAACTTGGCCCTCATGGGCCACCATAGAGCTCTAAATGTA
CACACGTTTTTTTTTCATAAGAACAAACTATATAAGAACATAAGGCTTCG
ATGGCCAAAATGTTAAGAACAAGTTAAGAACATTTTAAGACTTTGTGGAC
TCAAAAACACCCTTTTTCTTAGGAAAATGGATGAAATACTCACTAAATGG
TCAAAATAAGAACATGTTAAGAACATTCGAAGGCTTCAAAAATTTTGGAT
GTTCTTATGAAATAAAAAAATGTATATCATCTTTCCCTCTTTTTTCAGAA
CAGTATAAAAAGAACAGAACATACTCAAGAACAATTTAATCTGGATACTC
GAGTGATCGATATACAATCAAGAAGAATTTCAACTAACTAAAAGCTTTTT
GTAGCAAAATGGGTGTACCAAAATGTTTACAAATGTCACACAGAACTTCA
TTTATTTCCATGATTATTTTAACTCTAACTTTCTTTTTTGTGGAGATCAT
CGTTGGGTATGCTACAAATTCGATGGCTCTCGTCGCCGACAGTTTCCACA
TGTTGTCCGACGTTGTTTCTCTATTTGTCGGATTCATGGCGCTACGTTAT
TCAAAGATCAATAAGCAAAACGGGCGCTATACTTTCGGATGGGCGCGTGC
TGAAGTATTAGGAGCACTCGTAAATGCCGTTTTTCTGGTCGCGTTGTGTT
TTTCGATTTTCGTTGAAGCTCTTAAACGCATCATAATCCCTGAAGCCATT
GATAACGCGAAACTGGTTCTCATAACGGGTGCAATCGGGTTATTCGTAAA
TATAATCGGTTTATTCTTATTTCATCAAACGGGGCACGGACATTCTCATG
GTGGAGGTGGACATGGACATTCACATGGTGGTGGTCATGGTCACTCCCAT
CAGGCGCCCAAACAGAAACACGTGCATGCGAATGGACACTCTCACGGAGA
TAAACCGTTAGCGACTCCTTTGTTGGGTAAAGAAGACAATGTGACCATGG
ACAATGGATCTGTCGGAAGAGATGATGTGGATAAACAAGTAGTAACGCTA
AACGGTGAGTTTTTTGCTTTATTTAAAGTTTTTGTGTTTTTTTGCAAAGG
TTATCCCTGAATACGCCAATAGATCAGATTTATTAATTTCGTTTTGAAAT
GGGCATAGGTCCCGACGAGCCGTTTCAGTGAAGTTATCTGATATTTCGAA
GGTGTATTGGCGGCCGCCTACGCTAAGGCTCTAATAAAGGTGCGGGCCAA
TTGGGAATGATAGTCGGCCTTTGTGTCACATCCCCAGTCGGGTTCAACTA
CCCTTACGCGTTAACCTAAAAATATTTCGGTTGGACCCGCCCATCTCCGA
AAACGGGGCTGGGTTACCAGACCTCCCGCTAGAAAATCCTTAACGTGCAA
AATTCTGTAATCTAAACCTTCCAGATGTTGAAAATTTTTCCGACCTTCAG
AGCTTTAGCGTGTCGGATAAAAATTTCTGCATCTGGTTGCCAGGTAACAG
TGAAGTAAATAGAGGCATTTCCGTCTCAAACTTCTGCATAGTTGATCAAA
ATTTTAAGGATTTGAGCTAATTTTCTGTGTAAGGACGAAAAACCTTGCTT
TGACCCCTACTTGATATCTTTTTTCAACAGACCAATCAGCGTCGTCTTCA
GAAGAGAGCGTGTCATCATCAGCACCCAAAACTTCCTCACAACTTAATAT
TCGTGGTGTTTATTTACACGTGTTGGGTGACGCCCTGGGCTCGGTGATTG
TCATGATCAGTGCTCTCATCATCTTATACGCTAACGGCACTTGGATCGAA
TATGTGGACCCTTCAATGAGTATCATGCTAGTGGTAAGTGTTTTTCATAG
TCCGTATAAGAAACCCTGGTCTTTGTTGTAACTTTTTGTTTACTTTTTCG
ATTTGCTCAGTTTTTGATCACGTTACCAAATACTCCTCTTGGGATTGGTT
TAAAAGTTAATCACATGATCAAAAAGTGAGCAAAAAAAAGATTTCTCAAC
CCAAGTTAAAGTTCGCAACAATAGAAAGAATCAAAAGGCTTCCAGACCGA
GGTTTCTTATACGGACTGTGGTGTTTTTCATACCTCGTGTTTTTTTTCTA
AATAGAACGAGGCTTTGAAGTCATGAAAATTAGACCATCTCCGAGAACTT
TAAAGCATTTGTGGACTTTAGAATATGTAATTTCTTAGACTAGGAATCCA
TGGTAGTGGTCGTATAATTTTTCCCTCGAGTTACTCGAACTTATTTTTAT
TGGCTAACATGTTGGAAACTTTATTTGGGCCCATTCCTCTGGCCTCTGGG
TAAGGGTAGAGGTAATAATTTTGTTATACGTTTCTGTTCACAAAGCTAAT
ACGCCTAAAGTAGTTTAAAGAATATCGATTAAAAGACCTTCAAACTCATC
CAAATCTATTGTTCTTTCAAAGTCGATGGCTAGCCACTAATAGCTAAAGT
AAAGCTAGTTGAAACAAATTTCCTATATTTCCTATATTCTATTGAAATTT
TGATTCTACAATATTTTATCCGGGTTTGTAAAAGGTAAAGACGTATGCCT
TCTTCGCTTGACGCGTGAGAGAAATAATTGAGTTATTTTTATGCATGTAC
CAGCACAAGCTATTCTTATTACATTAGATTTCACAATTCGTCGATTTCGC
AACTATCTTCCCATGGTGTTTTCAATGTATCATAGTTTGAAATACCATAT
AATTGATTTTCCAGTTTGACAAATTGAGAAACTATGACGAAATTTATATT
CCCTCGAACTGTGTGAAAGTTTAAATTGCCAACTTATTATTCCAATACCT
CTGTTATCTCAATTATATGTCAATATGCTATCTCACAATATACCTCCAAA
GGATGACTTTTAGCAANGAAACAAAAGGCTTCCAGACCGAGGTTTCTTAT
ACGGACTGTGGTGTTTTTCATACCTCGTGTTTTTTTTCTAAATAGAACGA
GGCTTTGAAGTCATGAAAATTAGACCATCTCCGAGAACTTTAAAGCATTT
GTGGACTTTAGAATATGTAATTTCTTAGACTAGGAATCCATGGTAGTGGT
CGTATAATTTTTCCCTCGAGTTACTCGAACTTATTTTTATTGGCTAACAT
GTTGGAAACTTTATTTGGGCCCATTCCTCTGGCCTCTGGGTAAGGGTAGA
GGTAATAATTTTGTTATACGTTTCTGTTCACAAAGCTAATACGCCTAAAG
TAGTTTAAAGAATATCGATTAAAAGACCTTCAAACTCATCCAAATCTATT
GTTCTTTCAAAGTCGATGGCTAGCCACTAATAGCTAAAGTAAAGCTAGTT
GAAACAAATTTCCTATATTTCCTATATTCTATTGAAATTTTGATTCTACA
ATATTTTATCCGGGTTTGTAAAAGGTAAAGACGTATGCCTTCTTCGCTTG
ACGCGTGAGAGAAATAATTGAGTTATTTTTATGCATGTACCAGCACAAGC
TATTCTTATTACATTAGATTTCACAATTCGTCGATTTCGCAACTATCTTC
CCATGGTGTTTTCAATGTATCATAGTTTGAAATACCATATAATTGATTTT
CCAGTTTGACAAATTGAGAAACTATGACGAAATTTATATTCCCACGAACT
GTGTGAAAGTTTTTATTGCCAACTTATTATTCCAATACCTCTGTTATCTC
AATTATATGTCAATATGCTATCTCACAATATACCTCCAAAGGATGACTTT
TAGCAAATAATGATTTAATACTTTTGAAATAACAATATATGAAAATCTCG
ATATCTATATTTCTTGTCCAAAAAGTATTTTTAAATTCTTTCAACTAATC
ATTTTGAAGACCTTGTTAAAAGAATCTTCGATGATTTCAAAAATCAACAA
AAATAAACATTTTAATACCTCACCTAGCTTAATTTTACTAAAAAAACATT
TCATGATTATTTCCCCAGCTTATCATTTTGAAGTCCTCAATCCCATTGTT
GAAAAAATCTTCGATGGTTTCAAAAATACACAAAATAAACATCTTAATTA
CCTCCCCTAGCTCTTTTATTGTTTCATGAATATTTTTTCAGCTCATCATT
TTGAAGACTTCGATCACATTGTTAAAAAAAATTTTAGGCACATTTGAAAT
TTCATGAATATAAAAATCTCGATGCCTAAGTTTCGTCTAAAAATTAAAAA
CTTCTTTATAAATAATATTTCAGCTTATCATTTTGAAGACTTCAATCCCA
TTGCTAAAAGAATCATCGATGATTTTGATGCAGACAGTACCGACACATTT
AAAAATTCAAGAAATGCAGGACCGATTGATTGATCAAATACCTGGTGTGG
TCAGCGTCCATGAATTTCATGTCTGGCAACTGGCTGGAAGTAAAATTATC
GGTAAGTGTCTCTTTAAATAAAGGTTTTCTTTTTACATAAGTGTTCCCGT
TTCATATCAGACACATATTTCATATCGGGACAGTGTCTGCCTATTGTTAT
GTTATGCTGAAATAAGCAAAAAATGTTTTTCTTTTCCTCTTTCTGACTAA
TCTTGCTCCACATCCTTGTCAATTCAATGTGAAAAAGCTTGTAAATTAAA
ATTGACGAGTAAGCAAACGATATCTTTAAGTCTGGTTTACATACCATTAT
TTTGGTTAAGATTCCACTTCCCGGAATATGATTTCACTGCCGTTTTTCTG
TAATATTCTGTTAATGTTTTCTACTGGGATAACCGGCTAAAAGTTGTAAA
GGGTTTTTTAGATTTACGTCGCATAGCTTGTGTCGAATAAGGATGCCAGC
CAACTCATCATTCATTTTTCAACCAGCTGGGGTTTTAGTCTTTTTAGGAT
ATACCAGCAGTCTAGGATTTCTTTAGTTTATTATCACAGCAACTATACTT
CCTAGATTTACTTTCTATGATAAACCTCTTAGGATGAGTTGTAAGCTTGA
GGGTCCTTTCTTCGTGATACATGCTTCTCTTTTACATTTGTGGAAAATTG
ACAAAGTTTGACACCTTTTTGTGCAAAATGATTTTTTCTGAGATAGAGAT
GAGAATGTCGAGACTTAGAATAAAGAGAAAATGTACTATCCCTGGATAGC
TAATGCTATTCCCCTGGAAAGCTAATGCTATTCCCCTGGAAAGCTAATGC
TATTCCCCTGGAAAGCTAATGCTATTCCCCTGGATAGCTAATGCTATTCC
CCTGGGTAGCTAATGCTATTCCCCTGGATAGCTAATGCTATTCATAAAGA
TCTTTTAAGTAAATTTTAGTCTGCATTTAATGGGATACCCACGTAAAACC
ATTACTCTTTATATCAAAATGTAGTGTCTCTGGAATCAGATGAGATAGAG
TTTTTACAGGATTCTTTAATAATTGGTCATTTGAAGTAATAAACGCGTTT
TTTAGAAAAAGTAGCAAAATTTATGTTATTACTGGTTGACGACCAACCAA
ATCAAATAAGAGCTTGTAAAAACTCCATCTCGTCCCTCTGGGATCGGTGA
CTCCTTGTTTTGTATAAGCTAATTCCTTCTCTCATTTTCTTTCATAGCTT
CTGCACATGTCCGTTGTAACACCTTAGAAGATTACATGGCTATTGCCAAC
CAGTTGAAAGAGTTCTTCCATAATGAAGGAATACACTCAACCACCATTCA
ACCCGAGTTCGTCGAGAAACCTGAAAATCTAGACGAAATTGAAGGGAATG
GTGTTGTTTTAAGAGACTGTGTACTAGAGTGTGATCCTGACTGCGCAGAG
CGCATGTGTTGTACAACAAATAGCCAATCAGAAAACAATACCACAATAAA
TGATAAGAAAGAAATAGTTGTTGTGGAAATCGAAAAAACACTTACGCCGA
CAGAACCACAGATAAATGGGAATGCTCGTAATGTGTAATGGTGTATGATT
GATAGAGAATGAATATGGGTATCGGCTCACTTGAAAGATCATGTCTGNCA
TGGGAATGCTCGTAATGTGTAGGCTTGTAGACTAAAGCAATGGTGATGTA
TGATTGATAAAAAAATCAATATGGGTATTGGCTCAGTCACTTGAAAGATC
AAGTCTGCAAATGGAATCCTCCGGTAAAAACTTGCTTATGTTGAAAGGAT
CCATATTTTGGGATGTACGTTTAACCAAATGTCAAACATTACAACTACGG
AATTCCATGTTGAGCTTAAATTACAGATTTTTCACTAAAAACGTTCTATT
GGTTCTTTTCACTTTGATATAGACGATGTATCGTCCGTTAGAGGGTCAGT
AGTAAAAGCGGGAAAACATATATGCGCAGAGTCAGGGCATGAGAGTGGTT
TGCGGGAAAAAAGTGGCGGTAGCCACTGCTTTCTCCGCCCCGCGCTAACC
ACACCGTTTTCAAATTTATCCCGCCTCCTAAACTATTTCCTTTTTCAGTG
ATTTTGTGTAGATGATAGGATCGTCTAACTTTATCGATTTGATGATCCCA
GTCAGAATAGCAGAATATACTTTGATGCAGGGATGGGTAAAATCTCACAC
ATAAATTTCAAGAATAAACCTGGGTTTACACGGGGACGAGCTTGGTCACA
AGTATTTCCGTCATAAATGATGACACGAGAGTAAAGAAATATTGTAAAAA
TGACGTATAATTTTAGACATTTTCTCTCAGGTTCACCCTGGGGCTGTCTT
TATTTGGAAAGGGGTTGATCAGTTTCGTGTGTTGCTTACACGAAACACAG
TTTTTTAGTTGAAAAATATTTTATTTAGATATCATCATGTATTTAGTTTT
TTTAAATATTTCTCAGTTAAAATTTTGTTTTTTAAAATACTCATTGAAAT
TTTTTGATAGTTATACTTTGTTAAAAATCAATTATAATCAAACAATATTG
AAAGTCACAATTTTGAAAATCAGAAGAAAAATAATATTAGAATTCAGC

Coding sequence (CDS) from alignment at sc0000489:124990..134987-

>TCONS_00024367 ID=TCONS_00024367|Name=TCONS_00024367|organism=Clytia hemisphaerica|type=CDS|length=5472bp|location=Sequence derived from alignment at sc0000489:124990..134987- (Clytia hemisphaerica)
CTTCTGCACATGTCCGTTGTAACACCTTAGAAGATTACATGGCTATTGCC
AACCAGTTGAAAGAGTTCTTCCATAATGAAGGAATACACTCAACCACCAT
TCAACCCGAGTTCGTCGAGAAACCTGAAAATCTAGACGAAATTGAAGGGA
ATGGTGTTGTTTTAAGAGACTGTGTACTAGAGTGTGATCCTGACTGCGCA
GAGCGCATGTGTTGTACAACAAATAGCCAATCAGAAAACAATACCACAAT
AAATGATAAGAAAGAAATAGTTGTTGTGGAAATCGAAAAAACACTTACGC
CGACAGAACCACAGATAAATGGGAATGCTCGTAATGTGTAACTTATCATT
TTGAAGACTTCAATCCCATTGCTAAAAGAATCATCGATGATTTTGATGCA
GACAGTACCGACACATTTAAAAATTCAAGAAATGCAGGACCGATTGATTG
ATCAAATACCTGGTGTGGTCAGCGTCCATGAATTTCATGTCTGGCAACTG
GCTGGAAGTAAAATTATCGACCAATCAGCGTCGTCTTCAGAAGAGAGCGT
GTCATCATCAGCACCCAAAACTTCCTCACAACTTAATATTCGTGGTGTTT
ATTTACACGTGTTGGGTGACGCCCTGGGCTCGGTGATTGTCATGATCAGT
GCTCTCATCATCTTATACGCTAACGGCACTTGGATCGAATATGTGGACCC
TTCAATGAGTATCATGCTAGTGATGGGTGTACCAAAATGTTTACAAATGT
CACACAGAACTTCATTTATTTCCATGATTATTTTAACTCTAACTTTCTTT
TTTGTGGAGATCATCGTTGGGTATGCTACAAATTCGATGGCTCTCGTCGC
CGACAGTTTCCACATGTTGTCCGACGTTGTTTCTCTATTTGTCGGATTCA
TGGCGCTACGTTATTCAAAGATCAATAAGCAAAACGGGCGCTATACTTTC
GGATGGGCGCGTGCTGAAGTATTAGGAGCACTCGTAAATGCCGTTTTTCT
GGTCGCGTTGTGTTTTTCGATTTTCGTTGAAGCTCTTAAACGCATCATAA
TCCCTGAAGCCATTGATAACGCGAAACTGGTTCTCATAACGGGTGCAATC
GGGTTATTCGTAAATATAATCGGTTTATTCTTATTTCATCAAACGGGGCA
CGGACATTCTCATGGTGGAGGTGGACATGGACATTCACATGGTGGTGGTC
ATGGTCACTCCCATCAGGCGCCCAAACAGAAACACGTGCATGCGAATGGA
CACTCTCACGGAGATAAACCGTTAGCGACTCCTTTGTTGGGTAAAGAAGA
CAATGTGACCATGGACAATGGATCTGTCGGAAGAGATGATGTGGATAAAC
AAGTAGTAACGCTAAACGCTTCTGCACATGTCCGTTGTAACACCTTAGAA
GATTACATGGCTATTGCCAACCAGTTGAAAGAGTTCTTCCATAATGAAGG
AATACACTCAACCACCATTCAACCCGAGTTCGTCGAGAAACCTGAAAATC
TAGACGAAATTGAAGGGAATGGTGTTGTTTTAAGAGACTGTGTACTAGAG
TGTGATCCTGACTGCGCAGAGCGCATGTGTTGTACAACAAATAGCCAATC
AGAAAACAATACCACAATAAATGATAAGAAAGAAATAGTTGTTGTGGAAA
TCGAAAAAACACTTACGCCGACAGAACCACAGATAAATGGGAATGCTCGT
AATGTGTAACTTATCATTTTGAAGACTTCAATCCCATTGCTAAAAGAATC
ATCGATGATTTTGATGCAGACAGTACCGACACATTTAAAAATTCAAGAAA
TGCAGGACCGATTGATTGATCAAATACCTGGTGTGGTCAGCGTCCATGAA
TTTCATGTCTGGCAACTGGCTGGAAGTAAAATTATCGACCAATCAGCGTC
GTCTTCAGAAGAGAGCGTGTCATCATCAGCACCCAAAACTTCCTCACAAC
TTAATATTCGTGGTGTTTATTTACACGTGTTGGGTGACGCCCTGGGCTCG
GTGATTGTCATGATCAGTGCTCTCATCATCTTATACGCTAACGGCACTTG
GATCGAATATGTGGACCCTTCAATGAGTATCATGCTAGTGATGGGTGTAC
CAAAATGTTTACAAATGTCACACAGAACTTCATTTATTTCCATGATTATT
TTAACTCTAACTTTCTTTTTTGTGGAGATCATCGTTGGGTATGCTACAAA
TTCGATGGCTCTCGTCGCCGACAGTTTCCACATGTTGTCCGACGTTGTTT
CTCTATTTGTCGGATTCATGGCGCTACGTTATTCAAAGATCAATAAGCAA
AACGGGCGCTATACTTTCGGATGGGCGCGTGCTGAAGTATTAGGAGCACT
CGTAAATGCCGTTTTTCTGGTCGCGTTGTGTTTTTCGATTTTCGTTGAAG
CTCTTAAACGCATCATAATCCCTGAAGCCATTGATAACGCGAAACTGGTT
CTCATAACGGGTGCAATCGGGTTATTCGTAAATATAATCGGTTTATTCTT
ATTTCATCAAACGGGGCACGGACATTCTCATGGTGGAGGTGGACATGGAC
ATTCACATGGTGGTGGTCATGGTCACTCCCATCAGGCGCCCAAACAGAAA
CACGTGCATGCGAATGGACACTCTCACGGAGATAAACCGTTAGCGACTCC
TTTGTTGGGTAAAGAAGACAATGTGACCATGGACAATGGATCTGTCGGAA
GAGATGATGTGGATAAACAAGTAGTAACGCTAAACGCTTCTGCACATGTC
CGTTGTAACACCTTAGAAGATTACATGGCTATTGCCAACCAGTTGAAAGA
GTTCTTCCATAATGAAGGAATACACTCAACCACCATTCAACCCGAGTTCG
TCGAGAAACCTGAAAATCTAGACGAAATTGAAGGGAATGGTGTTGTTTTA
AGAGACTGTGTACTAGAGTGTGATCCTGACTGCGCAGAGCGCATGTGTTG
TACAACAAATAGCCAATCAGAAAACAATACCACAATAAATGATAAGAAAG
AAATAGTTGTTGTGGAAATCGAAAAAACACTTACGCCGACAGAACCACAG
ATAAATGGGAATGCTCGTAATGTGTAACTTATCATTTTGAAGACTTCAAT
CCCATTGCTAAAAGAATCATCGATGATTTTGATGCAGACAGTACCGACAC
ATTTAAAAATTCAAGAAATGCAGGACCGATTGATTGATCAAATACCTGGT
GTGGTCAGCGTCCATGAATTTCATGTCTGGCAACTGGCTGGAAGTAAAAT
TATCGACCAATCAGCGTCGTCTTCAGAAGAGAGCGTGTCATCATCAGCAC
CCAAAACTTCCTCACAACTTAATATTCGTGGTGTTTATTTACACGTGTTG
GGTGACGCCCTGGGCTCGGTGATTGTCATGATCAGTGCTCTCATCATCTT
ATACGCTAACGGCACTTGGATCGAATATGTGGACCCTTCAATGAGTATCA
TGCTAGTGATGGGTGTACCAAAATGTTTACAAATGTCACACAGAACTTCA
TTTATTTCCATGATTATTTTAACTCTAACTTTCTTTTTTGTGGAGATCAT
CGTTGGGTATGCTACAAATTCGATGGCTCTCGTCGCCGACAGTTTCCACA
TGTTGTCCGACGTTGTTTCTCTATTTGTCGGATTCATGGCGCTACGTTAT
TCAAAGATCAATAAGCAAAACGGGCGCTATACTTTCGGATGGGCGCGTGC
TGAAGTATTAGGAGCACTCGTAAATGCCGTTTTTCTGGTCGCGTTGTGTT
TTTCGATTTTCGTTGAAGCTCTTAAACGCATCATAATCCCTGAAGCCATT
GATAACGCGAAACTGGTTCTCATAACGGGTGCAATCGGGTTATTCGTAAA
TATAATCGGTTTATTCTTATTTCATCAAACGGGGCACGGACATTCTCATG
GTGGAGGTGGACATGGACATTCACATGGTGGTGGTCATGGTCACTCCCAT
CAGGCGCCCAAACAGAAACACGTGCATGCGAATGGACACTCTCACGGAGA
TAAACCGTTAGCGACTCCTTTGTTGGGTAAAGAAGACAATGTGACCATGG
ACAATGGATCTGTCGGAAGAGATGATGTGGATAAACAAGTAGTAACGCTA
AACGCTTCTGCACATGTCCGTTGTAACACCTTAGAAGATTACATGGCTAT
TGCCAACCAGTTGAAAGAGTTCTTCCATAATGAAGGAATACACTCAACCA
CCATTCAACCCGAGTTCGTCGAGAAACCTGAAAATCTAGACGAAATTGAA
GGGAATGGTGTTGTTTTAAGAGACTGTGTACTAGAGTGTGATCCTGACTG
CGCAGAGCGCATGTGTTGTACAACAAATAGCCAATCAGAAAACAATACCA
CAATAAATGATAAGAAAGAAATAGTTGTTGTGGAAATCGAAAAAACACTT
ACGCCGACAGAACCACAGATAAATGGGAATGCTCGTAATGTGTAACTTAT
CATTTTGAAGACTTCAATCCCATTGCTAAAAGAATCATCGATGATTTTGA
TGCAGACAGTACCGACACATTTAAAAATTCAAGAAATGCAGGACCGATTG
ATTGATCAAATACCTGGTGTGGTCAGCGTCCATGAATTTCATGTCTGGCA
ACTGGCTGGAAGTAAAATTATCGACCAATCAGCGTCGTCTTCAGAAGAGA
GCGTGTCATCATCAGCACCCAAAACTTCCTCACAACTTAATATTCGTGGT
GTTTATTTACACGTGTTGGGTGACGCCCTGGGCTCGGTGATTGTCATGAT
CAGTGCTCTCATCATCTTATACGCTAACGGCACTTGGATCGAATATGTGG
ACCCTTCAATGAGTATCATGCTAGTGATGGGTGTACCAAAATGTTTACAA
ATGTCACACAGAACTTCATTTATTTCCATGATTATTTTAACTCTAACTTT
CTTTTTTGTGGAGATCATCGTTGGGTATGCTACAAATTCGATGGCTCTCG
TCGCCGACAGTTTCCACATGTTGTCCGACGTTGTTTCTCTATTTGTCGGA
TTCATGGCGCTACGTTATTCAAAGATCAATAAGCAAAACGGGCGCTATAC
TTTCGGATGGGCGCGTGCTGAAGTATTAGGAGCACTCGTAAATGCCGTTT
TTCTGGTCGCGTTGTGTTTTTCGATTTTCGTTGAAGCTCTTAAACGCATC
ATAATCCCTGAAGCCATTGATAACGCGAAACTGGTTCTCATAACGGGTGC
AATCGGGTTATTCGTAAATATAATCGGTTTATTCTTATTTCATCAAACGG
GGCACGGACATTCTCATGGTGGAGGTGGACATGGACATTCACATGGTGGT
GGTCATGGTCACTCCCATCAGGCGCCCAAACAGAAACACGTGCATGCGAA
TGGACACTCTCACGGAGATAAACCGTTAGCGACTCCTTTGTTGGGTAAAG
AAGACAATGTGACCATGGACAATGGATCTGTCGGAAGAGATGATGTGGAT
AAACAAGTAGTAACGCTAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013670XLOC_013670Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024367-exon-sc0000489-1575043694:134957..134987TCONS_00024367-exon-sc0000489-1575043694:134957..134987Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1575043694:130784..131539TCONS_00024367-exon-sc0000489-1575043694:130784..131539Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1575043694:130005..130207TCONS_00024367-exon-sc0000489-1575043694:130005..130207Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1575043694:127487..127664TCONS_00024367-exon-sc0000489-1575043694:127487..127664Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1575043694:124990..126340TCONS_00024367-exon-sc0000489-1575043694:124990..126340Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1510915933:134957..134987TCONS_00024367-exon-sc0000489-1510915933:134957..134987Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1510915933:130784..131539TCONS_00024367-exon-sc0000489-1510915933:130784..131539Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1510915933:130005..130207TCONS_00024367-exon-sc0000489-1510915933:130005..130207Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1510915933:127487..127664TCONS_00024367-exon-sc0000489-1510915933:127487..127664Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1510915933:124990..126340TCONS_00024367-exon-sc0000489-1510915933:124990..126340Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1491911889:134957..134987TCONS_00024367-exon-sc0000489-1491911889:134957..134987Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1491911889:130784..131539TCONS_00024367-exon-sc0000489-1491911889:130784..131539Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1491911889:130005..130207TCONS_00024367-exon-sc0000489-1491911889:130005..130207Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1491911889:127487..127664TCONS_00024367-exon-sc0000489-1491911889:127487..127664Clytia hemisphaericaexon
TCONS_00024367-exon-sc0000489-1491911889:124990..126340TCONS_00024367-exon-sc0000489-1491911889:124990..126340Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024367-proteinTCONS_00024367-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000489supercontigsc0000489:124990..134987 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.5401	31.8592	7.77654	4.41135	9.22618	6.75455	11.625	11.8058	6.5118	7.18129	6.58431	5.094	6.93292	6.24455	4.51785	6.76622	6.77288	7.44102	6.57881	5.42147	5.05949	5.79568	24.475	23.2745	9.03628	10.4782	11.3862	7.47161	12.5746	14.6494
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027470Cation_efflux_CTD
IPR002524Cation_efflux
Vocabulary: Molecular Function
TermDefinition
GO:0008324cation transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006812cation transport
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006812 cation transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008324 cation transmembrane transporter activity
Blast
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BLAST of TCONS_00024367 vs. Swiss-Prot (Human)
Match: ZNT1 (Zinc transporter 1 OS=Homo sapiens GN=SLC30A1 PE=1 SV=3)

HSP 1 Score: 264.618 bits (675), Expect = 4.019e-78
Identity = 170/462 (36.80%), Postives = 241/462 (52.16%), Query Frame = 1 
Query:  172 HRTSFISMIILTLTFFFVEIIVGYATNSMALVADSFHMLSDVVSLFVGFMALRYSKINKQNGRYTFGWARAEVLGALVNAVFLVALCFSIFVEALKRIIIPEAIDNAKLVLITGAIGLFVNIIGLFLFHQTXXXXXXXXXXXXXXXXXXXXXXXQAPKQKHVH--------ANGHSHGDKPLATPLLG--------KEDNVTMDNGSVGRDDVDKQVVTLNDQXXXXXXXXXXXXXXXXXXQLNIRGVYLHVLGDALGSVIVMISALIILY------------------------------------ANGTWIEYVDPSMSIMLVLIILKTSIPLLKESSMILMQTVPTHLKIQEMQDRLIDQIPGVVSVHEFHVWQLAGSKIIASAHVRCNTLEDYMAIANQLKEFFHNEGIHSTTIQPEFVEKPENLDEIEGNGVVLRDCVLECDPDCAERMCCTTNSQS 1401
            +R   + M+ LT  F  +E++V   T+S+A+++DSFHMLSDV++L V  +A R+++      + TFGW RAEV+GALVNA+FL  LCF+I +EA++R I P  +    +VL  G  GL VN++GL LFH         G GH H   G      + P+ K           A G    D+     L+         K D    +N   G D V+ QV           E          + QLN+RGV+LHVLGDALGSVIV+++AL+  +                                    A   W+ Y+DP++ +++V I+L T+ PLLKES++IL+QTVP  + I+ +   L + + GV  VHE HVWQLAGS+IIA+AH++C     YM +A  +K+ FHN GIH+TTIQPEF           G+   +  C L C   CA + CC T  Q+
Sbjct:    7 NRGRLLCMLALTFMFMVLEVVVSRVTSSLAMLSDSFHMLSDVLALVVALVAERFARRTHATQKNTFGWIRAEVMGALVNAIFLTGLCFAILLEAIERFIEPHEMQQPLVVLGVGVAGLLVNVLGLCLFHHHSGFSQDSGHGHSHGGHGHGHGLPKGPRVKSTRPGSSDINVAPGEQGPDQEETNTLVANTSNSNGLKLDPADPENPRSG-DTVEVQV-----NGNLVREPDHMELEEDRAGQLNMRGVFLHVLGDALGSVIVVVNALVFYFSWKGCSEGDFCVNPCFPDPCKAFVEIINSTHASVYEAGPCWVLYLDPTLCVVMVCILLYTTYPLLKESALILLQTVPKQIDIRNLIKELRN-VEGVEEVHELHVWQLAGSRIIATAHIKCEDPTSYMEVAKTIKDVFHNHGIHATTIQPEFASV--------GSKSSVVPCELACRTQCALKQCCGTLPQA 453
The following BLAST results are available for this feature:
BLAST of TCONS_00024367 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNT14.019e-7836.80Zinc transporter 1 OS=Homo sapiens GN=SLC30A1 PE=1... [more]
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