TCONS_00024208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024208
Unique NameTCONS_00024208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024208 ID=TCONS_00024208|Name=TCONS_00024208|organism=Clytia hemisphaerica|type=transcript|length=1500bp
GAAACAGATCACTTCCACCAGAAGGCTCAAGGCCtcgtttttaggatttt
tccAAGTAACTTCTATCATTTCCAAGGTTATTCTTTTGACACCAACTTGA
CTTCGGAATGTGGTTAAGTCACATCGTTTTAAGCCTTACTTTATTTGCAG
CTGACTGTTTCTGCACGCAATTGCAAGCGTTCAAAGGGAATGCAATTCAT
CCATTTATTCCAGCGCAGACAAGTGCTCAAACAGTTTCTCAACTCCAATG
TATCTTGAAACATAGACTTGATCATTCAAAATACTGGTTAATCGAGGCGA
AACAGATCAAGTCAGATCAATGGTTGTGCagatatttcattttaattAAT
TATGACGATGTCCAGAAACTTTTCACAGAAGATGTAACTTCAACGGTTTA
TGCTAGAGTGTCTGTGAGAGAACTTAAGCAAAACATCCATGAAGCCACAC
CACCAGCAGAGAGTACCTCGGAAACTCAACCTCCATCAACCCCGGCATCA
TCATGCAAGGTCTTGAAAGATAACGACGATAAGAAGAGCAGCGAGAATGG
CAGGGGAGGGAATATCCAAAGCGGTGTTTATCAAATCAAGATTGGTGAGC
AGACAAAACCTGTTTATTGTGACATGATGAACAATGAAGGAGGCTGGACA
CTAATCCAAAGACGTGTTGATAAAAAAGATTTCTATCGAGGATGGGACGA
CTATAAAAATGGGTTTGGTTATCCTTCCGGAAGCTATTGGCTTGGTTTAG
AAGTGATCCACCAGATGACTAAGAAAGGGAACACGCTGATTCGATTGGAA
GGCTACCGGAAAGATAATCAAGAGCATCTGTATGCCATCCATGAAAGATT
CAAAGTGGAAAACGAAACCTGTCAATATAGAGTACACGTTGGTGGATATC
TCTCAGGAAGCAGTGATTCTTTATCAGAAGATGTTGCACTTATGAACAGC
GCCGCTTTTTCAACGCTGGATAACGATAACGATGCTTGGTTTGAGAGTTG
CGCACAAAAATGGCACGCTGGTTGGTGGTTCAACTCTTGTTGCCATATCA
ACGCTAATGGTGTGTTTCTCAATCAGGGAGATGAGTGGCAAAGAAATGGT
ATACTTTGGGGAGACGCCTTGATGCTGAGTTTTTCAATCGCTTTAAAGGA
GGTCGAAGCACCAACTCTTATTCCTTGAAGAATCCTGTTTGTCGACAAAG
TTTACtagatttgcaaaaaaaaattgttatagGGGCCTATTGACAAGGCC
ACTGGCAATATATCCTTgatttgtaaaagattttatgCAGAAGTTTTGGT
GAGGGAATTAGGACTAAATGGCACAGGTTCTGACACTTACAAGTCTGTTT
GTAAGAAGGATAAAAATTGGATCATTTCTACCATCTTTGATCTGAGTTTT
TGAAGACAGTATCCTAATGTGTACTTTATTTTATGGTTCAATTGTTTATG
TAGTggatattttttattcaaaaatgtGTTGACCATCATTGAGTAAAATT
Run BLAST on NCBI

protein sequence of TCONS_00024208-protein

>TCONS_00024208-protein ID=TCONS_00024208-protein|Name=TCONS_00024208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MWLSHIVLSLTLFAADCFCTQLQAFKGNAIHPFIPAQTSAQTVSQLQCIL
KHRLDHSKYWLIEAKQIKSDQWLCRYFILINYDDVQKLFTEDVTSTVYAR
VSVRELKQNIHEATPPAESTSETQPPSTPASSCKVLKDNDDKKSSENGRG
GNIQSGVYQIKIGEQTKPVYCDMMNNEGGWTLIQRRVDKKDFYRGWDDYK
NGFGYPSGSYWLGLEVIHQMTKKGNTLIRLEGYRKDNQEHLYAIHERFKV
ENETCQYRVHVGGYLSGSSDSLSEDVALMNSAAFSTLDNDNDAWFESCAQ
KWHAGWWFNSCCHINANGVFLNQGDEWQRNGILWGDALMLSFSIALKEVE
APTLIP
Run BLAST on NCBI

transcript from alignment at sc0000478:200696..203330-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024208 ID=TCONS_00024208|Name=TCONS_00024208|organism=Clytia hemisphaerica|type=transcript|length=2635bp|location=Sequence derived from alignment at sc0000478:200696..203330- (Clytia hemisphaerica)
GAAACAGATCACTTCCACCAGAAGGCTCAAGGCCTCGTTTTTAGGATTTT TCCAAGTAACTTCTATCATTTCCAAGGTTATTCTTTCGGNACAGATCACT TCCACCAGAAGGCTCAAGGCCTCGTTTTTAGGATTTTTCCAAGTAGCTCC TATCATTTTCAAGGTTATTCTTTTGACACCAACTTGACTTCGGAATGTGG TTAAGTCACATCGTTTTAAGCCTTACTTTATTTGCAGCTGACTGTTTCTG CACGCAATTGCAAGCGTTCAAAGGGAATGCAATTCATCCATTTATTCCAG CGCAGACAAGTGCTCAAACAGTTTCTCAACTCCAATGTATCTTGAAACAT AGACTTGATCATTCAAAATACTGGTTAATCGAGGCGAAACAGATCAAGTC AGATCAATGGTTGTGCAGATATTTCATTTTAATTAATTATGACGATGTCC AGAAACTTTTCACAGAAGATGTAACTTCAACGGTTTATGCTAGAGTGTCT GTGAGAGAACTTAAGCAAAACATCCATGAAGCCACACCACCAGCAGAGAG TACCTCGGAAACTCAACCTCCATCAACCCCGGCATCATCATGCAAGGTCT TGAAAGATAACGACGATAAGAAGAGCAGCGAGAATGGCAGGGGAGGGAAT ATCCAAAGCGGTGTTTATCAAATCAAGGTAATAAAGGTTCATTTCGCTTT GAGAATGCATTTCAATTATTTTTTACTTGTATTACCAATCCTGGACAAAA AGTTTTTTTACTTTCAAATAAATCCCCTACCTTCAATGTTGTTTTGGATT AAGTTGTGTTCATGCCATGTGACGATCCCAGTAAGGGCCGAGGCGGGGGG GGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNGGGGGGGGGGGGGGGGTGTTCTGGACATTTTAGAGAATTTATT TTCAATTTTAAAAAGTCTACGACCTTTTTTCCGTGATTGAATTCCTCAAT TCGAAAGCAAATGGAAAAGAACTTTTGAAACTGAACTTTTTTATCTTTTG AGGCTATTTTGGTATAAAAAAGTTCCTTTAAGCCTCCTGATTTCAATTAT AATTATTTTTCATTTAAAATTATTTCAAGGTAGCTCGTTGGTGTCGAAAA ACCCTGTCTTTAGATATTTTTTTCACACTTGAACAAATTAGTGGAACGTT TCAAGTTACCTGTAGATGTATTTAAGTCGTAGTCATTATTTTTCGAAACG ACGCTTTGATTAATCTCAAACGGATGTATTGGGCAATAAATACGTAATAG TTATGGGGCAGTTGCGAGTACAGCCCCCCATTACAATATTAGAAATATTT TACGAGTTCTGAGATTTTTCCGTGCAATATTTTCCGAGATTTTTCCGTAT AATTTCCATATTGTACGAGCAAATGTCTGATAACTGGTTTATCAGTGACC CAAATAATGCACTTTTTGTGTTGGAAAAAAAGCGCAGGGCGCTTTTGTAG CAAATTGACGTTAGATTGCTGCTACCGCTACAATGCAACTACATCTTTTC GTCAATTTATATTTTGTACATGTAAAATACAAGATATATTGTACTCTTTT TAACCAATCAAATTGCAGATATTTTTTGGATCGCCGATAACGAAGCATAA CGCGTAAATATACCTTATATTATAGATTGGTGAGCAGACAAAACCTGTTT ATTGTGACATGATGAACAATGAAGGAGGCTGGACACTAATCCAAAGACGT GTTGATAAAAAAGATTTCTATCGAGGATGGGACGACTATAAAAATGGGTT TGGTTATCCTTCCGGAAGCTATTGGCTTGGTTTAGAAGTGATCCACCAGA TGACTAAGAAAGGGAACACGCTGATTCGATTGGAAGGCTACCGGAAAGAT AATCAAGAGCATCTGTATGCCATCCATGAAAGATTCAAAGTGGAAAACGA AACCTGTCAATATAGAGTACACGTTGGTGGATATCTCTCAGGAAGCAGTG ATTCTTTATCAGAAGATGTTGCACTTATGAACAGCGCCGCTTTTTCAACG CTGGATAACGATAACGATGCTTGGTTTGAGAGTTGCGCACAAAAATGGCA CGCTGGTTGGTGGTTCAACTCTTGTTGCCATATCAACGCTAATGGTGTGT TTCTCAATCAGGGAGATGAGTGGCAAAGAAATGGTATACTTTGGGGAGAC GCCTTGATGCTGAGTTTTTCAATCGCTTTAAAGGAGGTCGAAGCACCAAC TCTTATTCCTTGAAGAATCCTGTTTGTCGACAAAGTTTACTAGATTTGCA AAAAAAAATTGTTATAGGGGCCTATTGACAAGGCCACTGGCAATATATCC TTGATTTGTAAAAGATTTTATGCAGAAGTTTTGGTGAGGGAATTAGGACT AAATGGCACAGGTTCTGACACTTACAAGTCTGTTTGTAAGAAGGATAAAA ATTGGATCATTTCTACCATCTTTGATCTGAGTTTTTGAAGACAGTATCCT AATGTGTACTTTATTTTATGGTTCAATTGTTTATGTAGTGGATATTTTTT ATTCAAAAATGTGTTGACCATCATTGAGTAAAATT

Coding sequence (CDS) from alignment at sc0000478:200696..203330-

>TCONS_00024208 ID=TCONS_00024208|Name=TCONS_00024208|organism=Clytia hemisphaerica|type=CDS|length=2142bp|location=Sequence derived from alignment at sc0000478:200696..203330- (Clytia hemisphaerica)
ATTGGTGAGCAGACAAAACCTGTTTATTGTGACATGATGAACAATGAAGG
AGGCTGGACACTAATCCAAAGACGTGTTGATAAAAAAGATTTCTATCGAG
GATGGGACGACTATAAAAATGGGTTTGGTTATCCTTCCGGAAGCTATTGG
CTTGGTTTAGAAGTGATCCACCAGATGACTAAGAAAGGGAACACGCTGAT
TCGATTGGAAGGCTACCGGAAAGATAATCAAGAGCATCTGTATGCCATCC
ATGAAAGATTCAAAGTGGAAAACGAAACCTGTCAATATAGAGTACACGTT
GGTGGATATCTCTCAGGAAGCAGTGATTCTTTATCAGAAGATGTTGCACT
TATGAACAGCGCCGCTTTTTCAACGCTGGATAACGATAACGATGCTTGGT
TTGAGAGTTGCGCACAAAAATGGCACGCTGGTTGGTGGTTCAACTCTTGT
TGCCATATCAACGCTAATGGTGTGTTTCTCAATCAGGGAGATGAGTGGCA
AAGAAATGGTATACTTTGGGGAGACGCCTTGATGCTGAGTTTTTCAATCG
CTTTAAAGGAGGTCGAAGCACCAACTCTTATTCCTTGAATGTGGTTAAGT
CACATCGTTTTAAGCCTTACTTTATTTGCAGCTGACTGTTTCTGCACGCA
ATTGCAAGCGTTCAAAGGGAATGCAATTCATCCATTTATTCCAGCGCAGA
CAAGTGCTCAAACAGTTTCTCAACTCCAATGTATCTTGAAACATAGACTT
GATCATTCAAAATACTGGTTAATCGAGGCGAAACAGATCAAGTCAGATCA
ATGGTTGTGCAGATATTTCATTTTAATTAATTATGACGATGTCCAGAAAC
TTTTCACAGAAGATGTAACTTCAACGGTTTATGCTAGAGTGTCTGTGAGA
GAACTTAAGCAAAACATCCATGAAGCCACACCACCAGCAGAGAGTACCTC
GGAAACTCAACCTCCATCAACCCCGGCATCATCATGCAAGGTCTTGAAAG
ATAACGACGATAAGAAGAGCAGCGAGAATGGCAGGGGAGGGAATATCCAA
AGCGGTGTTTATCAAATCAAGATTGGTGAGCAGACAAAACCTGTTTATTG
TGACATGATGAACAATGAAGGAGGCTGGACACTAATCCAAAGACGTGTTG
ATAAAAAAGATTTCTATCGAGGATGGGACGACTATAAAAATGGGTTTGGT
TATCCTTCCGGAAGCTATTGGCTTGGTTTAGAAGTGATCCACCAGATGAC
TAAGAAAGGGAACACGCTGATTCGATTGGAAGGCTACCGGAAAGATAATC
AAGAGCATCTGTATGCCATCCATGAAAGATTCAAAGTGGAAAACGAAACC
TGTCAATATAGAGTACACGTTGGTGGATATCTCTCAGGAAGCAGTGATTC
TTTATCAGAAGATGTTGCACTTATGAACAGCGCCGCTTTTTCAACGCTGG
ATAACGATAACGATGCTTGGTTTGAGAGTTGCGCACAAAAATGGCACGCT
GGTTGGTGGTTCAACTCTTGTTGCCATATCAACGCTAATGGTGTGTTTCT
CAATCAGGGAGATGAGTGGCAAAGAAATGGTATACTTTGGGGAGACGCCT
TGATGCTGAGTTTTTCAATCGCTTTAAAGGAGGTCGAAGCACCAACTCTT
ATTCCTTGAATGTGGTTAAGTCACATCGTTTTAAGCCTTACTTTATTTGC
AGCTGACTGTTTCTGCACGCAATTGCAAGCGTTCAAAGGGAATGCAATTC
ATCCATTTATTCCAGCGCAGACAAGTGCTCAAACAGTTTCTCAACTCCAA
TGTATCTTGAAACATAGACTTGATCATTCAAAATACTGGTTAATCGAGGC
GAAACAGATCAAGTCAGATCAATGGTTGTGCAGATATTTCATTTTAATTA
ATTATGACGATGTCCAGAAACTTTTCACAGAAGATGTAACTTCAACGGTT
TATGCTAGAGTGTCTGTGAGAGAACTTAAGCAAAACATCCATGAAGCCAC
ACCACCAGCAGAGAGTACCTCGGAAACTCAACCTCCATCAACCCCGGCAT
CATCATGCAAGGTCTTGAAAGATAACGACGATAAGAAGAGCAGCGAGAAT
GGCAGGGGAGGGAATATCCAAAGCGGTGTTTATCAAATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013581XLOC_013581Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024208-proteinTCONS_00024208-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024208-exon-sc0000478-1575043694:203255..203330TCONS_00024208-exon-sc0000478-1575043694:203255..203330Clytia hemisphaericaexon
TCONS_00024208-exon-sc0000478-1575043694:202654..203167TCONS_00024208-exon-sc0000478-1575043694:202654..203167Clytia hemisphaericaexon
TCONS_00024208-exon-sc0000478-1575043694:200696..201605TCONS_00024208-exon-sc0000478-1575043694:200696..201605Clytia hemisphaericaexon
TCONS_00024208-exon-sc0000478-1510915933:203255..203330TCONS_00024208-exon-sc0000478-1510915933:203255..203330Clytia hemisphaericaexon
TCONS_00024208-exon-sc0000478-1510915933:202654..203167TCONS_00024208-exon-sc0000478-1510915933:202654..203167Clytia hemisphaericaexon
TCONS_00024208-exon-sc0000478-1510915933:200696..201605TCONS_00024208-exon-sc0000478-1510915933:200696..201605Clytia hemisphaericaexon
TCONS_00024208-exon-sc0000478-1491911889:203255..203330TCONS_00024208-exon-sc0000478-1491911889:203255..203330Clytia hemisphaericaexon
TCONS_00024208-exon-sc0000478-1491911889:202654..203167TCONS_00024208-exon-sc0000478-1491911889:202654..203167Clytia hemisphaericaexon
TCONS_00024208-exon-sc0000478-1491911889:200696..201605TCONS_00024208-exon-sc0000478-1491911889:200696..201605Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000478supercontigsc0000478:200696..203330 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.192366 0.160789 0.0622304 0.243531 1.11178 0.585697 0.706619 0.727681 8.54514 7.57268 5.45698 8.87651 0.16449 0.0569414 0.187254 0.16746 0.082519 0.0211448 0 0.152845 0.13285 0.155519 0.0630179 0.0572925 0.17703 0.263325 0 0.16086 0.0610031 0.0932288
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014716Fibrinogen_a/b/g_C_1
IPR014715Fibrinogen_a/b/g_C_2
Blast
BLAST of TCONS_00024208 vs. Swiss-Prot (Human)
Match: ANGP4 (Angiopoietin-4 OS=Homo sapiens GN=ANGPT4 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.967e-35
Identity = 77/194 (39.69%), Postives = 115/194 (59.28%), Query Frame = 3
Query:  540 SENGRGGNIQSGVYQIKIGEQTKP--VYCDMMNNEGGWTLIQRRVDKK-DFYRGWDDYKNGFGYPSGSYWLGLEVIHQMTKKGNTLIRLEGYRKDNQEHLYAIHERFKVENETCQYRVHVXXXXXXXXXXXXEDVALMNSAAFSTLDNDNDAWFESCAQKWHAGWWFNSCCHINANGVFLNQGD-EWQRNGILW 1109
            +E  R G   SGVY I++   TKP  V+CD+ ++ G WTLIQRR +   +F R W DYK GFG P+G +WLG EV+HQ+T++    +R+E    +  E  YA +E F + +E   YR+ V   +  S  +  +   ++ + +FSTLD+DND     CAQ    GWWF++C   N NGV+ +  D +++ +GI W
Sbjct:  292 AEIQRSGASASGVYTIQVSNATKPRKVFCDLQSSGGRWTLIQRRENGTVNFQRNWKDYKQGFGDPAGEHWLGNEVVHQLTRRAAYSLRVELQDWEGHEA-YAQYEHFHLGSENQLYRLSV---VGYSGSAGRQSSLVLQNTSFSTLDSDNDHCLCKCAQVMSGGWWFDACGLSNLNGVYYHAPDNKYKMDGIRW 481          
The following BLAST results are available for this feature:
BLAST of TCONS_00024208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANGP46.967e-3539.69Angiopoietin-4 OS=Homo sapiens GN=ANGPT4 PE=1 SV=1[more]
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