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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024208 ID=TCONS_00024208|Name=TCONS_00024208|organism=Clytia hemisphaerica|type=transcript|length=1500bp
GAAACAGATCACTTCCACCAGAAGGCTCAAGGCCtcgtttttaggatttt
tccAAGTAACTTCTATCATTTCCAAGGTTATTCTTTTGACACCAACTTGA
CTTCGGAATGTGGTTAAGTCACATCGTTTTAAGCCTTACTTTATTTGCAG
CTGACTGTTTCTGCACGCAATTGCAAGCGTTCAAAGGGAATGCAATTCAT
CCATTTATTCCAGCGCAGACAAGTGCTCAAACAGTTTCTCAACTCCAATG
TATCTTGAAACATAGACTTGATCATTCAAAATACTGGTTAATCGAGGCGA
AACAGATCAAGTCAGATCAATGGTTGTGCagatatttcattttaattAAT
TATGACGATGTCCAGAAACTTTTCACAGAAGATGTAACTTCAACGGTTTA
TGCTAGAGTGTCTGTGAGAGAACTTAAGCAAAACATCCATGAAGCCACAC
CACCAGCAGAGAGTACCTCGGAAACTCAACCTCCATCAACCCCGGCATCA
TCATGCAAGGTCTTGAAAGATAACGACGATAAGAAGAGCAGCGAGAATGG
CAGGGGAGGGAATATCCAAAGCGGTGTTTATCAAATCAAGATTGGTGAGC
AGACAAAACCTGTTTATTGTGACATGATGAACAATGAAGGAGGCTGGACA
CTAATCCAAAGACGTGTTGATAAAAAAGATTTCTATCGAGGATGGGACGA
CTATAAAAATGGGTTTGGTTATCCTTCCGGAAGCTATTGGCTTGGTTTAG
AAGTGATCCACCAGATGACTAAGAAAGGGAACACGCTGATTCGATTGGAA
GGCTACCGGAAAGATAATCAAGAGCATCTGTATGCCATCCATGAAAGATT
CAAAGTGGAAAACGAAACCTGTCAATATAGAGTACACGTTGGTGGATATC
TCTCAGGAAGCAGTGATTCTTTATCAGAAGATGTTGCACTTATGAACAGC
GCCGCTTTTTCAACGCTGGATAACGATAACGATGCTTGGTTTGAGAGTTG
CGCACAAAAATGGCACGCTGGTTGGTGGTTCAACTCTTGTTGCCATATCA
ACGCTAATGGTGTGTTTCTCAATCAGGGAGATGAGTGGCAAAGAAATGGT
ATACTTTGGGGAGACGCCTTGATGCTGAGTTTTTCAATCGCTTTAAAGGA
GGTCGAAGCACCAACTCTTATTCCTTGAAGAATCCTGTTTGTCGACAAAG
TTTACtagatttgcaaaaaaaaattgttatagGGGCCTATTGACAAGGCC
ACTGGCAATATATCCTTgatttgtaaaagattttatgCAGAAGTTTTGGT
GAGGGAATTAGGACTAAATGGCACAGGTTCTGACACTTACAAGTCTGTTT
GTAAGAAGGATAAAAATTGGATCATTTCTACCATCTTTGATCTGAGTTTT
TGAAGACAGTATCCTAATGTGTACTTTATTTTATGGTTCAATTGTTTATG
TAGTggatattttttattcaaaaatgtGTTGACCATCATTGAGTAAAATT Run BLAST on NCBI protein sequence of TCONS_00024208-protein >TCONS_00024208-protein ID=TCONS_00024208-protein|Name=TCONS_00024208-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
MWLSHIVLSLTLFAADCFCTQLQAFKGNAIHPFIPAQTSAQTVSQLQCIL
KHRLDHSKYWLIEAKQIKSDQWLCRYFILINYDDVQKLFTEDVTSTVYAR
VSVRELKQNIHEATPPAESTSETQPPSTPASSCKVLKDNDDKKSSENGRG
GNIQSGVYQIKIGEQTKPVYCDMMNNEGGWTLIQRRVDKKDFYRGWDDYK
NGFGYPSGSYWLGLEVIHQMTKKGNTLIRLEGYRKDNQEHLYAIHERFKV
ENETCQYRVHVGGYLSGSSDSLSEDVALMNSAAFSTLDNDNDAWFESCAQ
KWHAGWWFNSCCHINANGVFLNQGDEWQRNGILWGDALMLSFSIALKEVE
APTLIP Run BLAST on NCBI transcript from alignment at sc0000478:200696..203330- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024208 ID=TCONS_00024208|Name=TCONS_00024208|organism=Clytia hemisphaerica|type=transcript|length=2635bp|location=Sequence derived from alignment at sc0000478:200696..203330- (Clytia hemisphaerica)
GAAACAGATCACTTCCACCAGAAGGCTCAAGGCCTCGTTTTTAGGATTTT
TCCAAGTAACTTCTATCATTTCCAAGGTTATTCTTTCGGNACAGATCACT
TCCACCAGAAGGCTCAAGGCCTCGTTTTTAGGATTTTTCCAAGTAGCTCC
TATCATTTTCAAGGTTATTCTTTTGACACCAACTTGACTTCGGAATGTGG
TTAAGTCACATCGTTTTAAGCCTTACTTTATTTGCAGCTGACTGTTTCTG
CACGCAATTGCAAGCGTTCAAAGGGAATGCAATTCATCCATTTATTCCAG
CGCAGACAAGTGCTCAAACAGTTTCTCAACTCCAATGTATCTTGAAACAT
AGACTTGATCATTCAAAATACTGGTTAATCGAGGCGAAACAGATCAAGTC
AGATCAATGGTTGTGCAGATATTTCATTTTAATTAATTATGACGATGTCC
AGAAACTTTTCACAGAAGATGTAACTTCAACGGTTTATGCTAGAGTGTCT
GTGAGAGAACTTAAGCAAAACATCCATGAAGCCACACCACCAGCAGAGAG
TACCTCGGAAACTCAACCTCCATCAACCCCGGCATCATCATGCAAGGTCT
TGAAAGATAACGACGATAAGAAGAGCAGCGAGAATGGCAGGGGAGGGAAT
ATCCAAAGCGGTGTTTATCAAATCAAGGTAATAAAGGTTCATTTCGCTTT
GAGAATGCATTTCAATTATTTTTTACTTGTATTACCAATCCTGGACAAAA
AGTTTTTTTACTTTCAAATAAATCCCCTACCTTCAATGTTGTTTTGGATT
AAGTTGTGTTCATGCCATGTGACGATCCCAGTAAGGGCCGAGGCGGGGGG
GGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNGGGGGGGGGGGGGGGGTGTTCTGGACATTTTAGAGAATTTATT
TTCAATTTTAAAAAGTCTACGACCTTTTTTCCGTGATTGAATTCCTCAAT
TCGAAAGCAAATGGAAAAGAACTTTTGAAACTGAACTTTTTTATCTTTTG
AGGCTATTTTGGTATAAAAAAGTTCCTTTAAGCCTCCTGATTTCAATTAT
AATTATTTTTCATTTAAAATTATTTCAAGGTAGCTCGTTGGTGTCGAAAA
ACCCTGTCTTTAGATATTTTTTTCACACTTGAACAAATTAGTGGAACGTT
TCAAGTTACCTGTAGATGTATTTAAGTCGTAGTCATTATTTTTCGAAACG
ACGCTTTGATTAATCTCAAACGGATGTATTGGGCAATAAATACGTAATAG
TTATGGGGCAGTTGCGAGTACAGCCCCCCATTACAATATTAGAAATATTT
TACGAGTTCTGAGATTTTTCCGTGCAATATTTTCCGAGATTTTTCCGTAT
AATTTCCATATTGTACGAGCAAATGTCTGATAACTGGTTTATCAGTGACC
CAAATAATGCACTTTTTGTGTTGGAAAAAAAGCGCAGGGCGCTTTTGTAG
CAAATTGACGTTAGATTGCTGCTACCGCTACAATGCAACTACATCTTTTC
GTCAATTTATATTTTGTACATGTAAAATACAAGATATATTGTACTCTTTT
TAACCAATCAAATTGCAGATATTTTTTGGATCGCCGATAACGAAGCATAA
CGCGTAAATATACCTTATATTATAGATTGGTGAGCAGACAAAACCTGTTT
ATTGTGACATGATGAACAATGAAGGAGGCTGGACACTAATCCAAAGACGT
GTTGATAAAAAAGATTTCTATCGAGGATGGGACGACTATAAAAATGGGTT
TGGTTATCCTTCCGGAAGCTATTGGCTTGGTTTAGAAGTGATCCACCAGA
TGACTAAGAAAGGGAACACGCTGATTCGATTGGAAGGCTACCGGAAAGAT
AATCAAGAGCATCTGTATGCCATCCATGAAAGATTCAAAGTGGAAAACGA
AACCTGTCAATATAGAGTACACGTTGGTGGATATCTCTCAGGAAGCAGTG
ATTCTTTATCAGAAGATGTTGCACTTATGAACAGCGCCGCTTTTTCAACG
CTGGATAACGATAACGATGCTTGGTTTGAGAGTTGCGCACAAAAATGGCA
CGCTGGTTGGTGGTTCAACTCTTGTTGCCATATCAACGCTAATGGTGTGT
TTCTCAATCAGGGAGATGAGTGGCAAAGAAATGGTATACTTTGGGGAGAC
GCCTTGATGCTGAGTTTTTCAATCGCTTTAAAGGAGGTCGAAGCACCAAC
TCTTATTCCTTGAAGAATCCTGTTTGTCGACAAAGTTTACTAGATTTGCA
AAAAAAAATTGTTATAGGGGCCTATTGACAAGGCCACTGGCAATATATCC
TTGATTTGTAAAAGATTTTATGCAGAAGTTTTGGTGAGGGAATTAGGACT
AAATGGCACAGGTTCTGACACTTACAAGTCTGTTTGTAAGAAGGATAAAA
ATTGGATCATTTCTACCATCTTTGATCTGAGTTTTTGAAGACAGTATCCT
AATGTGTACTTTATTTTATGGTTCAATTGTTTATGTAGTGGATATTTTTT
ATTCAAAAATGTGTTGACCATCATTGAGTAAAATT Coding sequence (CDS) from alignment at sc0000478:200696..203330- >TCONS_00024208 ID=TCONS_00024208|Name=TCONS_00024208|organism=Clytia hemisphaerica|type=CDS|length=2142bp|location=Sequence derived from alignment at sc0000478:200696..203330- (Clytia hemisphaerica)
ATTGGTGAGCAGACAAAACCTGTTTATTGTGACATGATGAACAATGAAGG
AGGCTGGACACTAATCCAAAGACGTGTTGATAAAAAAGATTTCTATCGAG
GATGGGACGACTATAAAAATGGGTTTGGTTATCCTTCCGGAAGCTATTGG
CTTGGTTTAGAAGTGATCCACCAGATGACTAAGAAAGGGAACACGCTGAT
TCGATTGGAAGGCTACCGGAAAGATAATCAAGAGCATCTGTATGCCATCC
ATGAAAGATTCAAAGTGGAAAACGAAACCTGTCAATATAGAGTACACGTT
GGTGGATATCTCTCAGGAAGCAGTGATTCTTTATCAGAAGATGTTGCACT
TATGAACAGCGCCGCTTTTTCAACGCTGGATAACGATAACGATGCTTGGT
TTGAGAGTTGCGCACAAAAATGGCACGCTGGTTGGTGGTTCAACTCTTGT
TGCCATATCAACGCTAATGGTGTGTTTCTCAATCAGGGAGATGAGTGGCA
AAGAAATGGTATACTTTGGGGAGACGCCTTGATGCTGAGTTTTTCAATCG
CTTTAAAGGAGGTCGAAGCACCAACTCTTATTCCTTGAATGTGGTTAAGT
CACATCGTTTTAAGCCTTACTTTATTTGCAGCTGACTGTTTCTGCACGCA
ATTGCAAGCGTTCAAAGGGAATGCAATTCATCCATTTATTCCAGCGCAGA
CAAGTGCTCAAACAGTTTCTCAACTCCAATGTATCTTGAAACATAGACTT
GATCATTCAAAATACTGGTTAATCGAGGCGAAACAGATCAAGTCAGATCA
ATGGTTGTGCAGATATTTCATTTTAATTAATTATGACGATGTCCAGAAAC
TTTTCACAGAAGATGTAACTTCAACGGTTTATGCTAGAGTGTCTGTGAGA
GAACTTAAGCAAAACATCCATGAAGCCACACCACCAGCAGAGAGTACCTC
GGAAACTCAACCTCCATCAACCCCGGCATCATCATGCAAGGTCTTGAAAG
ATAACGACGATAAGAAGAGCAGCGAGAATGGCAGGGGAGGGAATATCCAA
AGCGGTGTTTATCAAATCAAGATTGGTGAGCAGACAAAACCTGTTTATTG
TGACATGATGAACAATGAAGGAGGCTGGACACTAATCCAAAGACGTGTTG
ATAAAAAAGATTTCTATCGAGGATGGGACGACTATAAAAATGGGTTTGGT
TATCCTTCCGGAAGCTATTGGCTTGGTTTAGAAGTGATCCACCAGATGAC
TAAGAAAGGGAACACGCTGATTCGATTGGAAGGCTACCGGAAAGATAATC
AAGAGCATCTGTATGCCATCCATGAAAGATTCAAAGTGGAAAACGAAACC
TGTCAATATAGAGTACACGTTGGTGGATATCTCTCAGGAAGCAGTGATTC
TTTATCAGAAGATGTTGCACTTATGAACAGCGCCGCTTTTTCAACGCTGG
ATAACGATAACGATGCTTGGTTTGAGAGTTGCGCACAAAAATGGCACGCT
GGTTGGTGGTTCAACTCTTGTTGCCATATCAACGCTAATGGTGTGTTTCT
CAATCAGGGAGATGAGTGGCAAAGAAATGGTATACTTTGGGGAGACGCCT
TGATGCTGAGTTTTTCAATCGCTTTAAAGGAGGTCGAAGCACCAACTCTT
ATTCCTTGAATGTGGTTAAGTCACATCGTTTTAAGCCTTACTTTATTTGC
AGCTGACTGTTTCTGCACGCAATTGCAAGCGTTCAAAGGGAATGCAATTC
ATCCATTTATTCCAGCGCAGACAAGTGCTCAAACAGTTTCTCAACTCCAA
TGTATCTTGAAACATAGACTTGATCATTCAAAATACTGGTTAATCGAGGC
GAAACAGATCAAGTCAGATCAATGGTTGTGCAGATATTTCATTTTAATTA
ATTATGACGATGTCCAGAAACTTTTCACAGAAGATGTAACTTCAACGGTT
TATGCTAGAGTGTCTGTGAGAGAACTTAAGCAAAACATCCATGAAGCCAC
ACCACCAGCAGAGAGTACCTCGGAAACTCAACCTCCATCAACCCCGGCAT
CATCATGCAAGGTCTTGAAAGATAACGACGATAAGAAGAGCAGCGAGAAT
GGCAGGGGAGGGAATATCCAAAGCGGTGTTTATCAAATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024208-exon-sc0000478-1575043694:203255..203330 | TCONS_00024208-exon-sc0000478-1575043694:203255..203330 | Clytia hemisphaerica | exon |
| TCONS_00024208-exon-sc0000478-1575043694:202654..203167 | TCONS_00024208-exon-sc0000478-1575043694:202654..203167 | Clytia hemisphaerica | exon |
| TCONS_00024208-exon-sc0000478-1575043694:200696..201605 | TCONS_00024208-exon-sc0000478-1575043694:200696..201605 | Clytia hemisphaerica | exon |
| TCONS_00024208-exon-sc0000478-1510915933:203255..203330 | TCONS_00024208-exon-sc0000478-1510915933:203255..203330 | Clytia hemisphaerica | exon |
| TCONS_00024208-exon-sc0000478-1510915933:202654..203167 | TCONS_00024208-exon-sc0000478-1510915933:202654..203167 | Clytia hemisphaerica | exon |
| TCONS_00024208-exon-sc0000478-1510915933:200696..201605 | TCONS_00024208-exon-sc0000478-1510915933:200696..201605 | Clytia hemisphaerica | exon |
| TCONS_00024208-exon-sc0000478-1491911889:203255..203330 | TCONS_00024208-exon-sc0000478-1491911889:203255..203330 | Clytia hemisphaerica | exon |
| TCONS_00024208-exon-sc0000478-1491911889:202654..203167 | TCONS_00024208-exon-sc0000478-1491911889:202654..203167 | Clytia hemisphaerica | exon |
| TCONS_00024208-exon-sc0000478-1491911889:200696..201605 | TCONS_00024208-exon-sc0000478-1491911889:200696..201605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000478 | supercontig | sc0000478:200696..203330 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00024208 vs. Swiss-Prot (Human)
Match: ANGP4 (Angiopoietin-4 OS=Homo sapiens GN=ANGPT4 PE=1 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 6.967e-35 Identity = 77/194 (39.69%), Postives = 115/194 (59.28%), Query Frame = 3
Query: 540 SENGRGGNIQSGVYQIKIGEQTKP--VYCDMMNNEGGWTLIQRRVDKK-DFYRGWDDYKNGFGYPSGSYWLGLEVIHQMTKKGNTLIRLEGYRKDNQEHLYAIHERFKVENETCQYRVHVXXXXXXXXXXXXEDVALMNSAAFSTLDNDNDAWFESCAQKWHAGWWFNSCCHINANGVFLNQGD-EWQRNGILW 1109
+E R G SGVY I++ TKP V+CD+ ++ G WTLIQRR + +F R W DYK GFG P+G +WLG EV+HQ+T++ +R+E + E YA +E F + +E YR+ V + S + + ++ + +FSTLD+DND CAQ GWWF++C N NGV+ + D +++ +GI W
Sbjct: 292 AEIQRSGASASGVYTIQVSNATKPRKVFCDLQSSGGRWTLIQRRENGTVNFQRNWKDYKQGFGDPAGEHWLGNEVVHQLTRRAAYSLRVELQDWEGHEA-YAQYEHFHLGSENQLYRLSV---VGYSGSAGRQSSLVLQNTSFSTLDSDNDHCLCKCAQVMSGGWWFDACGLSNLNGVYYHAPDNKYKMDGIRW 481
The following BLAST results are available for this feature:
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