TCONS_00024201 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024201
Unique NameTCONS_00024201
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024201 ID=TCONS_00024201|Name=TCONS_00024201|organism=Clytia hemisphaerica|type=transcript|length=1286bp
aAAACACTTGAAACGAAACTCGAATAGGAAGTAAAATGCTGAACAAACAA
AATTCATAAGAGTAttggtttttcaaaaaatctataCGGAGAAGAGGCCC
TTCTGCGTAGAGGTTACATTGGCCACATAAAGTATAAATAGGAGAACAAT
TTGGGTATTAAACATCACAACTGTTTCGAAGAACGACAAGGAAGAAATAA
CGCAAAGAAAAGATGTCGTTTATATCAAATTGCTTGATTCCTTTGGCATG
TATCATTCTTGCAATCCAGGGCCAACTTTACGATTTGGAATTCAAAGAGA
ATGGTCAAACATACAAAGAAATGATCACAGTGGATAAAGTTAATCAAATT
ATCGTATTTGACGTTCCCACGCATGGAAACCGAAGCGCAGCTACCTATCT
TAAAGATTTCATTAATCGTTTAACAGTGATGCGAGACGACAAAGCCAAAA
CATGTTACGTGTGGAAGATGAAGAAAGACGAACCAACTCCTGACTCTGTT
CTCAAAGCTCTCAAAAAGGTCAACTACAAGTTCCCTCAAAACCGTTACTG
GATCGAGACTGAAAACATGCTTCCCATGGGAGTGTTTGATTTGTCACCTT
ATCCAATCATCGATCAGTTCTGTGATAAGCGAAGAGTACTGGAGGTCAAC
ATTTACGCCAAAATTACTGACATGGAACGAGATGCCAAGGCTGACTTATT
GAGCCGTTACTCGAATAGCCGTGTTCGACGAGCATTGAAGGTCAAGGATT
ACACTCTCTGCGACGAAGCTTCACATCATAAAGAGGTTACAAAGTGTTAT
AAAGCTGGTAAAATGAATTTGTTGTCGCTGAGGTGTCGAATCCTCGATAG
ACCAAAATGCACATACACAGTCAGCTGTAAATTTGATCCAAGCAAAAGTG
GTTATTTTTGTCCAGATCCAATTCACAGTATGACACAAATTCATTGCTGT
GACCCAAAATGCAATTGGTAAAAGATCTTACAACAAATTTGGTGCCGTCT
CTTTTATTTAGTTATTTCCCACATAACGAGCTCTAACCATAGCCAATACC
AAATTTTAAGAGGCATCAAAGAAAGACGTTTTTATGATCTATATTATATG
CTATAATGTGATTTTCTTATTCTAAATTGTAATGATTTCAAGGTGAAAGA
GAACATAATTATGGTAACTGTATACAATGTTAATAAGCTTAATTTTTGGC
CCCGGCAGGGGGAGGTAAAATCTACCACGCTGATGTTCTATTGTGTAATt
ctccgaaaaaaaattgaaatgatttgaaactttctg
Run BLAST on NCBI

transcript from alignment at sc0000478:150029..155176-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024201 ID=TCONS_00024201|Name=TCONS_00024201|organism=Clytia hemisphaerica|type=transcript|length=5148bp|location=Sequence derived from alignment at sc0000478:150029..155176- (Clytia hemisphaerica)
AAAACACTTGAAACGAAACTCGAATAGGAAGTAAAATGCTGAACAAACAA
AATTCATAAGAGTATTGGTTTTTCAAAAAATCTATACGGAGAAGAGGCCC
TTCTGCGTAGAGGTTACATTGGCCACATAAAGTATAAATAGGAGAACAAT
TTGGGTATTAAACATCACAACTGTTTCGAAGAACGACAAGGAAGAAATAA
CGCAAAGAAAAGGTATTTTAATCAGCATCTTCACTTCATCTTTTTAAAAT
AAGCTCTGGCAATTTCTGTTAGTAGTATGACACGAAATTTGACCATTTCT
AATTTAACTTTTCTTTAGATGTCGTTTATATCAAATTGCTTGATTCCTTT
GGCATGTATCATTCTTGCAATCCAGGTAAATTTAACTTTGTTTAAAACCT
AAAATGTGAGAATACCTAAAGAGTGGGACAGTTTCAGGGAGAGGTGGCCG
AATGGGTCAAGGGCACCAGTGCTTTAAACCATAGGATCCAGGTTCGAATA
CCTCTCTTCTTCCAATGTTCCATTCAGTTTAGAGCCCGTGAAAACAATCA
AAAGTCTTACATTACTGGGCTATCCTCGTAAATATTGCCTCTGACATCAT
TTATATATTTACATTATAGTATATAAAAGTTACACTGTGTTGACTTATTT
GGTATTACCATTTTTCAAACTGGTAAGTAACTATTCCTGGTGAATTTTGG
AACTTCTCAGAGCTTTGATGCTGTTATTTCTCTCCAGGGCCAACTTTACG
ATTTGGAATTTAAAGAGAATGGTCAAACATACAAAGAATTGATCACAGTG
GANGCTTTGATGCTGTTGTTTCTCTCCAGGGCCAACTTTACGATTTGGAA
TTCAAAGAGAATGGTCAAACATACAAAGAAATGATCACAGTGGATAAAGT
TAATCAAATTATCGTATTTGACGTTCCCACGCATGGAAACCGAAGCGCAG
CTACCTATCTTAAAGATTTCATTAATGTAAGTGAAACCTAGTCATTTAGC
AACTTTTGTGGCACCCAAGTTCAAATTCATTTGCTTAATCGCTAAGTTTG
TTCAAAGTTAGTAACCAATCTTTAGCACCGAGAAAAATATACTCAAAAGT
TTTATCCTTGCTGATATTTGATATCTGATGATATAATTTCAAGCCTTTTA
TTTTACGGTTCTCTCTTTCAGATAAATTCTTAAATTAAGGTCACTCTACT
CTATCTTGAATTTATAACATACAGTATATACTTTTGATTTTCCATTATCT
TTAATAGCGTTTAACAGTGATGCGAGACGACAAAGCCAAAACATGTTACG
TGTGGAAGATGAAGAAAGACGAACCAACTCCTGACTCTGTTCTCAAAGCT
CTCAAAAAGGTAGCGTTCGGAATTAGCGTTAATTTTTAAGTCAGGCCAAA
TTTCATACTTTCTTGTGGTTGTCGTAAGATCTTTTCAAAAAAATTTTCGT
TGCTGAAATATAGATATTAGAAAAAGCTGCCACTTTGCTCGCCGAATTGT
TCCAAAGATATCTTCTTTAACCGTATTAACCCCAACCTTTTTTGATTTTG
GTTGCCTAAAGGGTAGAATCTACCACCCCCGATTATTTGTTATCTACAAT
CATGGTCGAAATATATTGAGAATTCCGGTCATTTTAACGTTTTTCAAGAT
TTAAAGTTCTGGCGAGAAAGTCGATTTTGGGTTATCTCTTTAATTTAATC
GAATATTTCAATTTGGGAGGGTTTGGCAGACTTCCAGGCTATATTCTGAG
CCTTATTGGACTATTGTTGAACTTTTAGATCCTGAGATCCTAAGGTCCCA
AATCAGAGTTAAAACTCTACCCTTCGAACCTACTTTAGAGCACTTACAAA
TCGATTGTGGTTTTAAAACTTCCTGGGGAATTTCCTTTTTTCTCAAATAT
TATGACCTTGATTGTAGAAAAGCTATGGCCATGAAAATTGGTACAGATGT
TCTCCATCATGACACAAACTTCCAAGAGGAAAAAAACCTGATGTAGCCAA
GCTATGACCCTAAAAATTTACACAAGTACTCCTAATAAGATTTTATTAAA
AGTCAGAAAGTTTCAAATCGTTCCAAAAATTCTTCTGCGAGATATACACA
AAAGAACATCAGCATGATAGATTCTACTCCCCCCCTGGGGCTAATAGGGC
TAATAACCCAGCAGGCACACGACGTTGTTTAAACGTTAATCTAACGTTAT
ATGGACGTTTTGAACGTTAGATAAACCTTGAAACAACGTTGTGTGCCAGC
TGGGAAGGGGCGACAACAAAAATAGCAACTTAGAAGATTGACATCCAAGT
TTTTCACAATTTTAGTCGACCCTCCACGCCCTTCAACGAATTATATCAAG
TGGCCATGTTAATTTAGAATTTAACCACAATACTTAAATCAAAACACATT
CTCTAGGTCAACTACAAGTTCCCTCAAAACCGTTACTGGATCGAGACTGA
AAACATGCTTCCCATGGGAGTGTTTGATTTGTCACCTTATCCAATCATCG
ATCAGTTCTGTGATAAGCGAAGAGTACTGGAGGTCAACATTTACGCCAAA
ATTACTGACATGGAACGAGATGCCAAGGCTGACTTATTGAGTAAGTTCTT
TTTTTTTAATTTTTAAAGGTCTGGAGAAACAAGTTTCATAAAAATGAAAC
ATAAAGAAAGCTGCAGTTCAAATGCTAAACTTTGTTTCAGTGGCCCACCC
GCCTCAGAAAAATCTCAACATTAAACAATTTTTGTCACCTGTCTGTCGCC
AATTTTTGTAGCTTCAATGAAAGTTTTTTGTAACTGTTTCTGGTTTTTAG
TTTTTGAAACCGATTTGTATGTATTGTCTTTCCGTCATTTGAGGTGGGAC
CGGGAGGCGGGGCCACTGGCAACTTTTCCATCAAATTTTAACCCTTTTCG
TATTTCAGTTTTCAATTGTTTCTATTTGTTTGATGAAAAATGTTTCAAGT
AGACCCAGACCTTAATTATTGAAACAAATAGGAAAGTTAGTACGTACTTT
TACAAGAATAATTTAATGAAAACACCCGGGTAGCACTCATATGGTCCGAC
CCAAGGGCATGTGCCGCCCTTGAAGGTAGGTTTTTCGAGGCCCTCGAAAT
ACATTGTAAGGGTGTACTTTTGATAGAGTGCACTACAAGGGTCTTCTTTT
AACTGGATACACTGTAAGGATGTGTTTGGGGACTGCTGAATCGCAAGTCT
GTCAGTAGAAATCTAATTTATCTTTTATTGTTTGACACGCACCCATTATG
ATTTGTTTTGCACATTGTGTCGGCATCTCAGGCTCATTTTTGCTGCCCAG
CAAAATAAATATGCAATCAAACTACACTGTAAGGGAGAGAAACATTTCGG
TAAAATGCACCAAATGTAATTTTTCAATACTCAAGTTCAAGAACTGCACT
GTAAGGGTCCCATTTTGAAAGACAATTTTTTGGGGCATGACCATGTCGTT
TAGAAATCAAGTGCCCCCATTGAGTTTAAAGCCCGAAGGGCTAGAGTAGA
ATCTCTAAGCTTTCTCAGGCAAGAAAAAGTGAAGCCTTAAAAAATGCGCC
GTATTTTTGACGACAGATTGAATCTAGCAATTCCTTTGTTTACGATTGAT
ATTTTTTTTCCAAATTTAGCGGTAAATTTTATTTTCAATCTGTCATTTGT
GTAAAAACCAGGCGAAACGCTCAAGGCCGCGCAACTTTGGTAGGATTTGT
TGGCTTCAAATCCTACCAAAGAGATTCGATTCTAGCTCTTCGGGCTTATA
CTTCATTGGTGCCCCACCGGGTGAAAACAAAGCTCGAAACTTAAGAGATA
ATACGAGAATCAAGTTTCAGAAAAGGCAAAGGGAAGGACGAATTTAAGCT
AATTTAAACAAAGAGTATTTTACGAAAAAACAAGAAAGCCTAAGCGGCGT
AAAGGTTCAGCAGTGTTGGCACTGTCAACAACAGGAGCAAAATCTTTCAA
TGTACTATATTTTTCTTTTATAAGCATAACGTTTATAAGCATATGTAGGC
TCAGTTTTTGGTACCTAAACAATGGCTCTATTGTTTGAAAACAATAGAAT
GCTAAGCATAATGCGAGCCTGATGTAGGGGCAGACACTTGCTTATAAAAA
AAAACATGTTGACTTGAGTCGGGCGAGCAATAAAGATTTAATTACTTTAA
ACTTTTTTCTACTAATAAAGAAAGAAAGATTTGACCATATAAGTTGGAGG
TATTAATTATATGTGGTTTTCTCTTACGCATGCGCACAATAGAAAGTCAG
ATAGTTTGATTTTTGCCTGGAATAGTCGATTGTCGATTGATAATTGCGCG
CATAGGCCCCGACAAAGTCAAATCTTTTCGACCAGTTGTATTTTAAAGGC
CCATTGCGCTACGCGCTGGGCCAATAAGAAATATCCAGTCATTTGAGTCA
CGGATCGTTCTTAATAAAAATTGTTTCTTTCTTTTGGAACAAAGCTAAAC
TATGACTAGAAATTTGATTTGCAAGTTCATAAATCCTCATGACATTTGTC
ATTTACTCCTTGGTTAATTATAATATTTTATTGAAATAGTTCCTACTCTC
TTTTTTCCATCTAGGCCGTTACTCGAATAGCCGTGTTCGACGAGCATTGA
AGGTCAAGGATTACACTCTCTGCGACGAAGCTTCACATCATAAAGAGGTT
ACAAAGTGTTATAAAGCTGGTAAAATGAATTTGTTGTCGCTGAGGTGTCG
AATCCTCGATAGACCAAAATGCACATACACAGTCAGCTGTAAATTTGATC
CAAGCAAAAGTGGTTATTTTTGTCCAGATCCAATTCACAGTATGACACAA
ATTCATTGCTGTGACCCAAAATGCAATTGGTAAAAGATCTTACAACAAAT
TTGGTGCCGTCTCTTTTATTTAGTTATTTCCCACATAACGAGCTCTAACC
ATAGCCAATACCAAATTTTAAGAGGCATCAAAGAAAGACGTTTTTATGAT
CTATATTATATGCTATAATGTGATTTTCTTATTCTAAATTGTAATGATTT
CAAGGTGAAAGAGAACATAATTATGGTAACTGTATACAATGTTAATAAGC
TTAATTTTTGGCCCCGGCAGGGGGAGGTAAAATCTACCACGCTGATGTTC
TATTGTGTAATTCTCCGAAAAAAAATTGAAATGATTTGAAACTTTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013579XLOC_013579Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024201-exon-sc0000478-1575043694:154965..155176TCONS_00024201-exon-sc0000478-1575043694:154965..155176Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1575043694:154802..154858TCONS_00024201-exon-sc0000478-1575043694:154802..154858Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1575043694:154201..154347TCONS_00024201-exon-sc0000478-1575043694:154201..154347Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1575043694:153818..153919TCONS_00024201-exon-sc0000478-1575043694:153818..153919Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1575043694:152587..152770TCONS_00024201-exon-sc0000478-1575043694:152587..152770Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1575043694:150029..150612TCONS_00024201-exon-sc0000478-1575043694:150029..150612Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1510915933:154965..155176TCONS_00024201-exon-sc0000478-1510915933:154965..155176Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1510915933:154802..154858TCONS_00024201-exon-sc0000478-1510915933:154802..154858Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1510915933:154201..154347TCONS_00024201-exon-sc0000478-1510915933:154201..154347Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1510915933:153818..153919TCONS_00024201-exon-sc0000478-1510915933:153818..153919Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1510915933:152587..152770TCONS_00024201-exon-sc0000478-1510915933:152587..152770Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1510915933:150029..150612TCONS_00024201-exon-sc0000478-1510915933:150029..150612Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1491911889:154965..155176TCONS_00024201-exon-sc0000478-1491911889:154965..155176Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1491911889:154802..154858TCONS_00024201-exon-sc0000478-1491911889:154802..154858Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1491911889:154201..154347TCONS_00024201-exon-sc0000478-1491911889:154201..154347Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1491911889:153818..153919TCONS_00024201-exon-sc0000478-1491911889:153818..153919Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1491911889:152587..152770TCONS_00024201-exon-sc0000478-1491911889:152587..152770Clytia hemisphaericaexon
TCONS_00024201-exon-sc0000478-1491911889:150029..150612TCONS_00024201-exon-sc0000478-1491911889:150029..150612Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000478supercontigsc0000478:150029..155176 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.30485	0.589711	0.596765	0	0.271839	0.421189	0.25916	0.436135	0.360867	0.618911	0	0.537	3.6705	5.84749	777.545	717.739	133.922	152.155	67.4988	24.2169	16.5663	17.1115	925.975	752.198	247.007	313.217	34.274	38.0531	3605.31	4666.03
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024201 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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