TCONS_00023489 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023489
Unique Name	TCONS_00023489
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1671

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000455:26886..34947+

transcript sequence

>TCONS_00023489 ID=TCONS_00023489|Name=TCONS_00023489|organism=Clytia hemisphaerica|type=transcript|length=1671bp
ACTTTAAAACGTGCAAGATCAAAGAGttcaattttgaatttggtGAATAG
TAACAATGAAAATTCAAATCTTTTTCATGGTACTTTTGACCTATCAGTGC
CAACTGGCAACATCAGCCACCATTATGTATGATAAAGTGTATGAGATCAC
ACTTTACACCGGTCATGAGAGTTGGGCCGGAACAAATGCAGGAGTTTGGA
TCAAGATCTTTGGAAATGCTGGACATTCCGAATGGAAGAAATTACCCGAT
GATAAAAAATATTACGAGAAAGGAAGTATCGACAAGTTTGATGTGACATT
TGATGCGAATTATGGACAGATCAACAAAATACAAGTCGGACAAGATAGTG
ATGGCATGTATGCTGACTGGAAACTTGAAGAGGTTCGTGTTCGTCACTAC
AACTCTTTGAAAACATCAAGATTTGTCGTcagaaaatggctgaaaaaaca
ATACGGAGTTTCAACACGTCACATCGAGGCTACACGCGAAGAAAAAgTTA
ATTGTGGTAGAGCCCCCGCACAGCCAAGAGTGGTCATGGGTGATACATCA
GCTAAATCACAATGGCCTTGGCAAGCACAGATCCGTAAGACATCCAACGA
ACATCACTGTGGTGGAACCCTTATCCACCCTGAATGGGTGTTAAGTGCCT
CTCATTGCTATTTCAATGATCAAAGTAAAGATAATTATATCATAACACTT
GGTGAACATAATCGTTATCAGCACGAGAGATCGGAACAAACTTTCCGAGT
TAAGAAAATGCTCATCCATCCAAACTACAACCCAGATAAAATAAACAACG
ATTTGACATTACTTCAATTAGACCGTCCGGTATTAATAACGCCCGATGTT
CAATTGGCTTGTTTACCGGCTCCTGGATATCAATTACCACCAGGTGAAGA
TTGTTTCGTGAGCGGTTGGGGAGATGAATACGTCGGGAGCGGAACACCTG
TTGTCTTGAAACACGCAAGACTCCCGTCTGTATCTAATAAAGAATGTTAC
ACAAACATGAAGCATATCAACAAAGTTACAGACCAGATGGTTTGTGGTGG
CGGTAACAACCGAGGTGGGTGTTTTGGTGATTCAGGTGGTCCATATGTGT
GTTTGAACCAAGCTGGGCAGTTTGTTGTCCAGGGTGCAGTCAGTTGGGGT
GTAAGTGATTGTAAAGCAAGCGAATTCTTCACCGTCTTTGCAAGAGTTGG
AAATTTTGTTAGTTGGATCGAGGAGAATATTTATTCCAAATATATTTCTG
ATTTCTAAAACGATAATTATTAGAAGTTTATGAATTTGTTAGTTTatcaa
ttgattttttttcttcaaaacgtCGTTTGGTTACAGAAATATATTCATCA
TTTCGAAGTATATTATATTGCATCATATTGATAAAGGTGCTGGGGTTcat
gtaaattaacaaaaattcaaatgaatTGATACATAAGGAATGCGAGGGAA
AAGACGAcgaatttttaaaatctttacttTAGAAAATCAATATAATAATG
AAGGGAGATGAATGCATGAAGTATTAAACTGgacaaaatataacaaaatg
tAGACACGACAAAGAAATTTGGGCTATCAGTTTTCCATCAAAAGGCGCTT
GTATTGAATAAGTCTCTATCTAGGATCCAGAAGAGAATCAAAATCCTTTG
CTTTGATGTGTCTACATTTTG

Run BLAST on NCBI

transcript from alignment at sc0000455:26886..34947+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023489 ID=TCONS_00023489|Name=TCONS_00023489|organism=Clytia hemisphaerica|type=transcript|length=8062bp|location=Sequence derived from alignment at sc0000455:26886..34947+ (Clytia hemisphaerica)
ACTTTAAAACGTGCAAGATCAAAGAGttcaattttgaatttggtGAATAG
TAACAATGAAAATTCAAATCTTTTTCATGGTACTTTTGACCTATCAGTGC
CAACTGGCAACATCAGGTAAACACcttttttacacccctgtctcacagcc
ccggtggaactttcttcctcagtggggataaaaagtcctattgaaatccc
aatagggACAGAAATTCTTGTTCCAAGGTTTAAAGATCCAGTAGGGATGG
GTTTGGATAATTCAACATTGAATGGGGATGGGAATTAAAGTCAATTCcct
agtggggctgaaatttcagggtattttcccaccggggacgcaatttttgg
caaattttccagtgggctggggtcccagcaggtctgtgacacagaagTGT
TTTTAGCAagatgtttagatttttcatttGTCCCAACTCCTGAAATAAAA
ATCTACGAAATCCACAGAGCTAAGAATGTTCGTACAATGTGTTTAACTTT
TGAGTTCGAAGCATGGTTTTGGTCATTGTAGATGTTCACATCAaaggttc
caggtcccaccaaaAAAATGAGGTCCCACCACTACTTAAAACTCCCACCT
AAATTCAGCGACCCTAAGTCCCAGCACttcatttagaaaaattcaaaatc
tgaaaaagaattAAGGTAACACAAAATAGCTTGTTTTATCAAGGACTTAT
GATAGCTAAGTATACTAAATGTTATTATCTTTAAAATAGTTAACAAAATT
ACACTTCGGAAGCCCAAATCAACAAACCCCTATAGTGGGGGTAAACACTA
TGTATGACAATGAACAGTCTCACAATGAACAATTTTTCTCATTGTTAGCC
ACCATTATGTATGATAAAGTGTATGAGATCACACTTTACACCGGTCATGA
GAGTTGGGCCGGAACAAATGCAGGAGTTTGGATCAAGATCTTTGGAAATG
CTGGACATTCCGAATGGAAGAAATTACCCGATGATAAAAAATATTACGAG
AAAGGAAGGTGAGTATGAACTTAGCGTAAATTGAACTAGCCTTGACACCT
CTCATCTTACTTTAGAGATGAAAATAGTTGGAAGGTCTGAATATCACtga
ttgaatttttctttgCCGCTACTCAAAAGCGAAGCAGTTCcagtttcaat
cagtgattccgacgTTTCGTTTAATCCTAACTCTAAATAAAGGCCGACTG
AATTAGAGGGGGTTGCTCAAAGAAGACCAGCTTACGGTAGCTTATTTCAT
CGCACAACATTGACTGAATTTAGAGATGAAACCCTATCCGGTACacagat
ttcaaaatttaaagttgcATCTATCTGACGTCCACAATTAAACAACGTTA
CAACAATGTTAAAAAAGGCCGAAATGACTCTTCTCGTAAGGGCATTTTTA
ATACCTTTGCAGAATTCGTCTGTAAAGTATACAcctttttcgaccgtagt
cgcgcggtcaggtgcgtgtcattatccccctaaacttgatccaatccttt
tttgacacatttttctatcgtctttaggtgcgaaaaaaggactgcggtgg
ttttagtgggataacgGAGACAAAAATATGCCCGCGCGAGAATTGGCGGC
TACCGTCGAAAATGTGTATTGTTGCCAAGATACTTCAACACCATTATAGA
CATAATTAGTGTTTTCACCTGTGTGGCGGAGACCGCATTGATTTTGATAA
ATCTCGAgaacagaaaaaactaaatcaaAATAAAGGAAACACTTACATTA
GCATTTGTCACCAAAACCAACTGCTCAAAGATCCAAAACGTCTTTTTTTC
AATCACATCGgcttaaataaaataaaaagtcttaGGAAGAAAATCATTCT
AAAGCTCCAGCCAAAATGGTGTACGGTATGAAAGGTCTATTCATGGTATT
CCTGGTGTAATGTTTTATACGAATAAACCCAAAATAGACCGGGTCTTTGT
CactcattttcaatttcaacaataaaactagtggcAAAGGGCCGGGCTAN
CGGGTCTTTGCcacttattttgaatttaaacaataaaaaaactggtggca
aacgGCCGGGCTATTTTGGGAGCTTCCAcataaaacacttttttgtttct
ttatgtAGTATCGACAAGTTTGATGTGACATTTGATGCGAATTATGGACA
GATCAACAAAATACAAGTCGGACAAGATAGTGATGGCATGTATGCTGACT
GGAAACTTGAAGAGGTAAGAATGCGAATGTGAATGCAACCAAAGGTAAGA
TCGTAGGCTACACTAGACTGATACGCCAAttgggctggaacggtatcacg
cgggaaaggtgagcgtaggagttaagtaagcgtaggaagaaattttgtcg
gcggcataGGCTGAAAACCCTGTTAATCAACAGCCACTCACCAAGTTTTG
CTCGCTCTTCTACACAGCTCCTATTCTACCATGTTCCCACTactatgttc
ccgccctctgacatgattaattaacagactagttcgCTAGTCtaaggctg
cacgcatcccctctgatatgttttgatataggggatgcgaaagGTCTACA
ATGTTGCTGTCTTAATGAAAACAACAACACAATGACTTCatttgtttctt
tctttgattgaatgtgataaaattttgtaaaattttataaactcATGCAA
CTTTTGGTTCCCCGAAattggggtaactctcggacagGACTGAACCTTTC
GTGtggtttcattttgaaaatgatcatAATTGAATTAAAGTAAAAGCAAA
GCAAACAGAAGTTGGGGGAAAcaccaaatttcaagaaaaagacTTTCGTA
AAAAGGACATCTGCAAAGATCCCACGAAACCTTGCTGTCCAGCCTATATT
ATTGTTTCATTCTTACCACAATTTTTCTGGTATTTGAAGGTTCGTGTTCG
TCACTACAACTCTTTGAAAACATCAAGATTTGTCGTcagaaaatggctga
aaaaacaATACGGAGTTTCAACACGTCACATCGAGGCTACACGCGAAGAA
AAAggtactaattttaaaatttgtgattctttactttttgaaaagtaaat
tttaactttattaGGTTATCATTGTCATCGAAGTGGATTTTAAAAAGCAA
GTCACACATTTAAAGCCTTCTTCTTCTTTGCAATGAAATAAGAGTTTGGT
AAAAGTTAATTACATAGCTTGAGACACATTTAGCCACCAAacctttatgt
ttttttgtcggtGAAACGTTGTAGCTGATTGCTATACAGTGAAGTCTTCA
TAACTCAAACaggcacggggaacacaaatctgttcgagttgaaaaatttt
cgagttataaagtaaggttttataaggcattgttaactgacgaaaccata
aaacttgttcgagttaaggagacattaaGAGTTAAAGTTAAAGAAACTCC
ACATTATTCTCAAATAAAGCTAAATAAAGCCCTTCTACTAAGCGTATACT
ATTTCTCCATTCATAACAATCCATCTTAACGCATCTTTATCAAATGATTT
TTACAGTTAATTGTGGTAGAGCCCCCGCACAGCCAAGAGTGGTCATGGGT
GATACATCAGCTAAATCACAATGGCCTTGGCAAGCACAGATCCGTAAGAC
ATCCAACGAACATCACTGTGGTGGAACCCTTATCCACCCTGAATGGGTGT
TAAGTGCCTCTCATTGCTATTTCAATGATCAAAGTAAAGATAATTATATC
ATAACACTTGGTGAACATAATCGTTATCAGTAAGTGAACATTGTGTCGTC
CCGTTTAAAATCCATACGAACCTAATTCTTGAAAATGAGACAGTGAGGAT
ATCACCTGGAAATTGCTATaatttacaaagtttttccCGGGTTACCCCTG
GAAAATAAAGTTCTTCAACACGCGCCCAAGGGATTATTTAATGTTCATCC
CAAATCTGGATAAAAGAGAAACTATATCCAAAGGATCTTCAAGATTCCAC
CAGGGTCAATTTGTCTAACTTACTTTACGTTTACGTTACGTTAGTAATTT
CGTAGTAAAGGGTAAAAAATAACCTCTTTCTATGAGTCTTCATTAAATAG
TTGTCAATTAAAATCGAATGTATTATAAGagtgggggttggaaaaaacAA
TACCTATTATTATAATACAATGTACATTACGGTATGTGTCCATATTTGAG
AAAACAGTGTACATGAGTAGGATATTTCTCTTTTCTAGGCACGAGAGATC
GGAACAAACTTTCCGAGTTAAGAAAATGCTCATCCATCCAAACTACAACC
CAGATAAAATAAACAACGATTTGACATTACTTCAATTAGACCGTCCGGTA
TTAATAACGCCCGATGTTCAATTGGCTTGTTTACCGGCTCCTGGATATCA
ATTACCACCAGGTTTGTAATTATGGACCGGTCATTTTTTAGCTCAGTCCT
AACAAAATGGCATACTCGAGCGAGAGtcccttttgaaaaaaaatagaaaa
tgttaTAACACTATGccagggtgtctacggattttttttcaggattttca
aggttttaaagttttttttggtcatttttaagtggtttttcaaggttttt
tggcaaaaactttggcacttttcaaggttttttgatactcagTTGACATG
GCTCTCTACAggaattttggttttttttcagagtgatagttgaaagaaaa
atagaggacggcaaataaaatttattcgcttttggtgcccgggtaattac
ttccacagttaaatttttatctccctctcgagaacaataccaaaaaaaga
aatactccaactccctagtcttccaactgtaaaaataaagaattagaagc
aaaccaattgtttacagtgaccgaggaggcgcaaccatggtttgcgccga
cgagagaaaattttgattttgactctttCAAATCGCTAAAGACGCcttgt
tttttattaattttttacaaaaatcaattgcCAAAAAAGTTGTTTTAAGG
CGTCctcgaaattttattgatgaacggCCATTATTCCAAGACGCCCTGAA
GCGATTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAATATGTTGCATTCGTTGCGACAGAATCGCAACAGAAACAGGGA
AATATGGAATTCTCTATATGTTATAAaggtttagcgccgcaggcggtttt
ttagttatttttatttttcgaatgactggatagtgcttttcaaggttttt
aacgatttttcaaggttttcaaggtttttcccagaaaattgatagttttc
aaggttttcaaggttgggtggttcattttcaaggttttcaaggtttttaa
ggtcccgtagacaccctgtatGCATGATGACaattaaatatttcatttct
gCATGTCTGAGTTTTAATCTTTGCCAGTCTTGTTCCAACTAGAAATAGCC
TGATCAAAGTAATTACCTCGATAAACGAATATAAGTAGACATGTAATTAA
CACGAATGGATTGGAAACATTTCGTGTTAATTAAACGCGTAATAAGGTAG
ATTGCTCGGTAATCGGTCAATGCTATGTATTAATGAACTCAATCATTGCC
ATGAAATTATATTGAATAGTGCTCGATGATAAACAAACAAGATATCAGAG
CCAAGTAAAATTGAGAgagttttctttcaataaaattacGCAACTGAAAA
TGTCGTGCTTCTGCACTTGCTCCATGTATCATTGATCTCGTAAATTTCTT
GTACATTTGACTAGTTCAAATGCAGAAGCACGAAATATTAAGTCGTGTAT
TTTAATTGGAAGAAAACTCTCTCAATTTTACTTGGCTCTGATATCTTGTT
TGTTTATCATCGAGCACTATTCAATATAATTATCTTTATTAATGAATTCA
TAATATTCATGACGAAAGCACCCCAAAAAGGGCCCGGGCTACTTTTGGTG
CTTCCATATAAAAACACAACGCCTTGAATTCTAAAACATGAAAACTGTTC
TACTTACCAACATTTTTTGAGTTATGAAAATCCAATGAATTGACATTTTA
GGTGAAGATTGTTTCGTGAGCGGTTGGGGAGATGAATACGTCGGGAGCGG
AACACCTGTTGTCTTGAAACACGCAAGACTCCCGTCTGTATCTAATAAAG
AATGTTACACAAgtaagtaccttaagggaactttatTTGgcaggaactta
ttttggcgaatagtgaatttttttattttggcgggaactaattttggcga
atgacagcgtaaatctgttctattttgccttatttcgagcaattttaatg
aattttaggggttatttaggcaaagaaacaaaaaattaaattttggcgga
aagttATTTTggcaaatccgccaaattagttcccgccaaaataagttccc
ttaaggtgtGGGCAAAGGTTGAATTTCGTATTGTACAAGTAGCATATGAG
CGTTCTGTCTGGAACCTTCCATGAGCTTAATGGAACGTTCGCATTCATTT
GTACTTTCATTTGTATCGCTTTTGATACAAATAAGGGAACAAAAgcaact
aattttggcgagaaatcattttcggtcaaaatacaaaaaaatcgaTCCTT
CTCATAGTCATAGTCTACACCATAGATAGCTCCAGGTTTTTAGgacttac
tcttggtctataggcactgctataagCGGCCAtcagtgacccccaccggg
aattcgctttttaattgaattaaacataatagacaactttcacaaaagaa
gtttatcaatagagaaatgaatgtttaaaacacagctgattggcttttTC
GAAACTCTGATGTGTCATCAAAACCTCAGTGTGCATGCGATGTATCCgga
gaaattcaatattcaaaacaagaataGCGCATATTATATCCCAAAGAGTA
GGGTTTtaacgctcgaaacgaaggaagatatgacgtagtcTATCCTTCCA
AATGTCTTTCTAGAACTCCATGAATTATGTACTTTATTTAATAGGATCAA
TTTttgtggggattaaatttcgcagattttGCAGATGGGCTTAacgaaat
ttaattcccgcgaaatctatcccattaaagtaggcTAGAAATAGCATCAT
ACAAATTAAATGCTCTTAGAGTGTGAAGAGTTCCATTAAAAGTGCCGGTT
ATAAGAATTTGAGGCTGTAGTTATTGTAGAGGGCTAAAATTAACGCAGCT
CTCAATTGCCTACATACCTTTTACATAAAATAATCTACAGTCATTAGGAA
ATCAAACATACCTATTGATTATTGTTTTTCACATCTCCCAAACAGACATG
AAGCATATCAACAAAGTTACAGACCAGATGGTTTGTGGTGGCGGTAACAA
CCGAGGTGGGTGTTTTGGTGATTCAGGTGGTCCATATGTGTGTTTGAACC
AAGCTGGGCAGTTTGTTGTCCAGGGTGCAGTCAGTTGGGGTGTAAGTGAT
TGTAAAGCAAGCGAATTCTTCACCGTCTTTGCAAGAGTTGGAAATTTTGT
TAGTTGGATCGAGGAGAATATTTATTCCAAATATATTTCTGATTTCTAAA
ACGATAATTATTAGAAGTTTATGAATTTGTTAGTTTatcaattgattttt
tttcttcaaaacgtCGTTTGGTTACAGAAATATATTCATCATTTCGAAGT
ATATTATATTGCATCATATTGATAAAGGTGCTGGGGTTcatgtaaattaa
caaaaattcaaatgaatTGATACATAAGGAATGCGAGGGAAAAGACGAcg
aatttttaaaatctttacttTAGAAAATCAATATAATAATGAAGGGAGAT
GAATGCATGAAGTATTAAACTGgacaaaatataacaaaatgtAGACACGA
CAAAGAAATTTGGGCTATCAGTTTTCCATCAAAAGGCGCTTGTATTGAAT
AAGTCTCTATCTAGGATCCAGAAGAGAATCAAAATCCTTTGCTTTGATGT
GTCTACATTTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013205	XLOC_013205	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000455	supercontig	sc0000455:26886..34947 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.121333	0.18931	0.219807	0.241928	0.687222	0.543052	0.904757	1.21386	0.768053	0.520758	0.691313	1.48685	8.93522	12.2075	4.33443	3.1432	17.7539	25.4771	24.2125	22.9908	92.7073	120.635	1.74394	2.28625	8.19954	5.02877	1.33097	1.24289	0.511746	0.384181

Blast

[Close]

BLAST of TCONS_00023489 vs. Swiss-Prot (Human)
Match: CEL2A (Chymotrypsin-like elastase family member 2A OS=Homo sapiens GN=CELA2A PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.133e-38
Identity = 96/268 (35.82%), Postives = 135/268 (50.37%), Query Frame = 2

Query:  458 VSTRHIEATREEKVNCGRAPAQP---RVVMGDTSAKSQWPWQAQIRKTSNE---HHCGGTLIHPEWVLSASHCYFNDQSKDNYIITLGEHNRYQHERSEQTFRVKKMLIHPNYNPDKIN--NDLTLLQLDRPVLITPDVQLACLPAPGYQLPPGEDCFVSGWGDEYVGSGTPVVLKHARLPSVSNKECYTNMKHINKVTDQMVCXXX-XXXXXXXXXXXXPYVCLNQAGQFVVQGAVSWGVS-DCKASEFFTVFARVGNFVSWIEENI 1231
            + T  +       ++CG     P   RVV G+ +  + WPWQ  ++ +SN    H CGG+LI   WVL+A+HC     S   Y + LG HN Y  E       V K+++H ++N ++I+  ND+ LL+L  PV +T  +QLACLP  G  LP    C+V+GWG        P VL+  RL  V    C ++    + V   M+C GG      C GDSGGP  C    G++ V G VS+G    C      +VF RV N++ WI   I
Sbjct:    2 IRTLLLSTLVAGALSCGDPTYPPYVTRVVGGEEARPNSWPWQVSLQYSSNGKWYHTCGGSLIANSWVLTAAHCI---SSSRTYRVGLGRHNLYVAESGSLAVSVSKIVVHKDWNSNQISKGNDIALLKLANPVSLTDKIQLACLPPAGTILPNNYPCYVTGWGRLQTNGAVPDVLQQGRLLVVDYATCSSSAWWGSSVKTSMICAGGDGVISSCNGDSGGPLNCQASDGRWQVHGIVSFGSRLGCNYYHKPSVFTRVSNYIDWINSVI 266

The following BLAST results are available for this feature:

BLAST of TCONS_00023489 vs. Swiss-Prot (Human)

BLAST of TCONS_00023489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CEL2A	5.133e-38	35.82	Chymotrypsin-like elastase family member 2A OS=Hom...	[more]

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TCONS_00023489 (transcript) - C. hemisphaerica