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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023481 ID=TCONS_00023481|Name=TCONS_00023481|organism=Clytia hemisphaerica|type=transcript|length=2104bp
TgcttattgaaaaattgttttaaaatataaagctATGTAATTACAGTTCA
GTTCAGTACATTAATCACACAATAGACCGATTCCGCGTGACGTCATTTTC
TCCCACAATCAGCCatgcatttttctaagaaatggtAGAAAGAATATGCT
CATCTCCAAGCCTTTTAGTGTTCCCGTTTGGACCTGCGCATAGTTTCTTG
TTTGTTGTTATCATTTCGTGAGTGAAAATTAGTCATTTAGGAACAGACAG
TTGCTTGAAATTTGGTTGAAGATAGTGCCGAGCTGGGTTTCGCATCTTAC
TCTCTCAGCGATAATCCGAGCAGTAAGAACGTCAGATGGTGCTTTCTGTA
TTTGGCCACTGATGGTAAAGCAATTTGTAGTATTATCAAACACCACAAGA
TCATTCTGGAGCGATCTATGTTTATAATCTGCCGATGCATTTTGCTTGAA
ATTTGGTTGAAGATAGTGCCGAACTGGATTTCGCCGAATCAGTCTTTACG
TGTACGTACATTCTCATGATATCAAAAAAAATGACTAGATATCTATAGAC
AACTTGCGGTTAAAtctattaaaaattaaaaaacgatCGCCAAAAAATCT
CTAGAAACCTTTCAAACTACCATCTAGTCTTTTGATTGAACcttgttctt
aattttgaaATACGAGTTCGTGACAACTATACCGCCGAACATAAATAATT
CGACGATCGAAAGAATCGACGCACCAGTCATCAAACCAACACAtccacca
aaattcgaaaataattctTGCCAACGATAAGATGGtatctcttcaacaat
ttccaGTAAGAATGATTTATATGTGAATGCAAGTTCtaaaaagttttctg
ttttGACCGGATTTTGAGAAAGAATCAATCTAAATTCTTCTTGGTGACAA
GGGTCCAGGCGGCATCTTGAGTTGCATTTCGTGGCCAGGATGTTATCCTC
TTCGACTTTATTAAAGCAGGACGAAGCAAAGGTTTCATTAATTTCCGTTT
TGTTGTCGAACGTGACAGGTTTACGCAAGTGCTTTTTATACATGACTGGT
ATAGCGCCACAACGTATGAGAACCTCTTCAAAAATGCATCCTTTCAAACA
TTTGTTAACGGTGTAGTTGCCAGTGAATTTGTTCTGTTCATAAGTTCCTA
AGCCTCGAACGCAATCAGTATACGGTAATCCGagtctttttataattttc
ttttcaacggTGACATGATAGAAGCCTTCAGCGGCCCAGTAGACAGCAGC
AGATGCTTGAGGAAAGGTTTCCAAAGAGGGGTTTATATATATTTCACTCC
ACTCATTGATGCCTCTTACTCTCTTAGCGATAATCCGAGCAGTAAGAACG
TCAGATGGTGCTTTCTGTATTTGGCTACTGATGGTAAAGCAATTTGTAGT
ATTGTCAAACACCACAAGATCATTCTGGAGCGATCTATGTTTATAATCTG
CCGATACATTTTGCACCTTGACGAACGTTGTTCCATTATAGCCACATTTG
GTCAAATCTTTTGCACAATCCATCGCACTAAACTTGATCATTTTTGGACG
TTTTCCGACTAGTCCCTTTTCAATAAATCGACGACGATATACGAGCAACT
CTTCGTAAGTGCAAATGGTTATTGCTGGGAGAACCATTTCTTCTTGGGTG
ACAATTTTAGTGCTCGTTTGACTATGATGGTCGAGAAAAGCATCCCAATG
TTCTTTTGAAATAATAATGGCAATGATGAAGGAAGTGACGATCAAAAGTG
ACCAAACAACTCTGGTTGCCGGACCTCCTGTGGCAATTCTACTCAGACCA
TGGATGGTCAGGCCCTCTGCGTAACTTTGATTTTCGTGCTGGGATATTTT
GTTTTCGACGttatttcttctttcttcttcactCTTCTTTTGTTCATATT
TTCCTTGGGTATTTCCTTCTTTTGAGTCCTCAAAACCTTTGTTGATGATG
CTAAAAGCTTGCATTTTACCCTCTTTTATTTTTAACGATTTCATTTCTTC
TTGAATTGAAGACAGTTTTTCTTCTAAAGAGCAAAGTCTTGCATCTGTCT
CCATCTTCTTCAAATTCATCCTTCTCGGTTCTAGATTTTCCATCAGATCT
ATTT Run BLAST on NCBI protein sequence of TCONS_00023481-protein >TCONS_00023481-protein ID=TCONS_00023481-protein|Name=TCONS_00023481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
IDLMENLEPRRMNLKKMETDARLCSLEEKLSSIQEEMKSLKIKEGKMQAF
SIINKGFEDSKEGNTQGKYEQKKSEEERRNNVENKISQHENQSYAEGLTI
HGLSRIATGGPATRVVWSLLIVTSFIIAIIISKEHWDAFLDHHSQTSTKI
VTQEEMVLPAITICTYEELLVYRRRFIEKGLVGKRPKMIKFSAMDCAKDL
TKCGYNGTTFVKVQNVSADYKHRSLQNDLVVFDNTTNCFTISSQIQKAPS
DVLTARIIAKRVRGINEWSEIYINPSLETFPQASAAVYWAAEGFYHVTVE
KKIIKRLGLPYTDCVRGLGTYEQNKFTGNYTVNKCLKGCIFEEVLIRCGA
IPVMYKKHLRKPVTFDNKTEINETFASSCFNKVEEDNILATKCNSRCRLD
PCHQEEFRLILSQNPVKTENFLELAFTYKSFLLEIVEEIPSYRWQELFSN
FGGCVGLMTGASILSIVELFMFGGIVVTNSYFKIKNKVQSKD Run BLAST on NCBI transcript from alignment at sc0000454:114349..116452 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023481 ID=TCONS_00023481|Name=TCONS_00023481|organism=Clytia hemisphaerica|type=transcript|length=2104bp|location=Sequence derived from alignment at sc0000454:114349..116452 (Clytia hemisphaerica)
AAATAGATCTGATGGAAAATCTAGAACCGAGAAGGATGAATTTGAAGAAG
ATGGAGACAGATGCAAGACTTTGCTCTTTAGAAGAAAAACTGTCTTCAAT
TCAAGAAGAAATGAAATCGTTAAAAATAAAAGAGGGTAAAATGCAAGCTT
TTAGCATCATCAACAAAGGTTTTGAGGACTCAAAAGAAGGAAATACCCAA
GGAAAATATGAACAAAAGAAGagtgaagaagaaagaagaaataaCGTCGA
AAACAAAATATCCCAGCACGAAAATCAAAGTTACGCAGAGGGCCTGACCA
TCCATGGTCTGAGTAGAATTGCCACAGGAGGTCCGGCAACCAGAGTTGTT
TGGTCACTTTTGATCGTCACTTCCTTCATCATTGCCATTATTATTTCAAA
AGAACATTGGGATGCTTTTCTCGACCATCATAGTCAAACGAGCACTAAAA
TTGTCACCCAAGAAGAAATGGTTCTCCCAGCAATAACCATTTGCACTTAC
GAAGAGTTGCTCGTATATCGTCGTCGATTTATTGAAAAGGGACTAGTCGG
AAAACGTCCAAAAATGATCAAGTTTAGTGCGATGGATTGTGCAAAAGATT
TGACCAAATGTGGCTATAATGGAACAACGTTCGTCAAGGTGCAAAATGTA
TCGGCAGATTATAAACATAGATCGCTCCAGAATGATCTTGTGGTGTTTGA
CAATACTACAAATTGCTTTACCATCAGTAGCCAAATACAGAAAGCACCAT
CTGACGTTCTTACTGCTCGGATTATCGCTAAGAGAGTAAGAGGCATCAAT
GAGTGGAGTGAAATATATATAAACCCCTCTTTGGAAACCTTTCCTCAAGC
ATCTGCTGCTGTCTACTGGGCCGCTGAAGGCTTCTATCATGTCAccgttg
aaaagaaaattataaaaagactCGGATTACCGTATACTGATTGCGTTCGA
GGCTTAGGAACTTATGAACAGAACAAATTCACTGGCAACTACACCGTTAA
CAAATGTTTGAAAGGATGCATTTTTGAAGAGGTTCTCATACGTTGTGGCG
CTATACCAGTCATGTATAAAAAGCACTTGCGTAAACCTGTCACGTTCGAC
AACAAAACGGAAATTAATGAAACCTTTGCTTCGTCCTGCTTTAATAAAGT
CGAAGAGGATAACATCCTGGCCACGAAATGCAACTCAAGATGCCGCCTGG
ACCCTTGTCACCAAGAAGAATTTAGATTGATTCTTTCTCAAAATCCGGTC
aaaacagaaaactttttaGAACTTGCATTCACATATAAATCATTCTTACt
ggaaattgttgaagagataCCATCTTATCGTTGGCAagaattattttcga
attttggtggaTGTGTTGGTTTGATGACTGGTGCGTCGATTCTTTCGATC
GTCGAATTATTTATGTTCGGCGGTATAGTTGTCACGAACTCGTATttcaa
aattaagaacaagGTTCAATCAAAAGACTAGATGGTAGTTTGAAAGGTTT
CTAGAGATTTTTTGGCGatcgttttttaatttttaatagaTTTAACCGCA
AGTTGTCTATAGATATCTAGTCATTTTTTTTGATATCATGAGAATGTACG
TACACGTAAAGACTGATTCGGCGAAATCCAGTTCGGCACTATCTTCAACC
AAATTTCAAGCAAAATGCATCGGCAGATTATAAACATAGATCGCTCCAGA
ATGATCTTGTGGTGTTTGATAATACTACAAATTGCTTTACCATCAGTGGC
CAAATACAGAAAGCACCATCTGACGTTCTTACTGCTCGGATTATCGCTGA
GAGAGTAAGATGCGAAACCCAGCTCGGCACTATCTTCAACCAAATTTCAA
GCAACTGTCTGTTCCTAAATGACTAATTTTCACTCACGAAATGATAACAA
CAAACAAGAAACTATGCGCAGGTCCAAACGGGAACACTAAAAGGCTTGGA
GATGAGCATATTCTTTCTaccatttcttagaaaaatgcatGGCTGATTGT
GGGAGAAAATGACGTCACGCGGAATCGGTCTATTGTGTGATTAATGTACT
GAACTGAACTGTAATTACATagctttatattttaaaacaatttttcaata
agcA Coding sequence (CDS) from alignment at sc0000454:114349..116452 >TCONS_00023481 ID=TCONS_00023481|Name=TCONS_00023481|organism=Clytia hemisphaerica|type=CDS|length=1479bp|location=Sequence derived from alignment at sc0000454:114349..116452 (Clytia hemisphaerica)
ATAGATCTGATGGAAAATCTAGAACCGAGAAGGATGAATTTGAAGAAGAT
GGAGACAGATGCAAGACTTTGCTCTTTAGAAGAAAAACTGTCTTCAATTC
AAGAAGAAATGAAATCGTTAAAAATAAAAGAGGGTAAAATGCAAGCTTTT
AGCATCATCAACAAAGGTTTTGAGGACTCAAAAGAAGGAAATACCCAAGG
AAAATATGAACAAAAGAAGagtgaagaagaaagaagaaataaCGTCGAAA
ACAAAATATCCCAGCACGAAAATCAAAGTTACGCAGAGGGCCTGACCATC
CATGGTCTGAGTAGAATTGCCACAGGAGGTCCGGCAACCAGAGTTGTTTG
GTCACTTTTGATCGTCACTTCCTTCATCATTGCCATTATTATTTCAAAAG
AACATTGGGATGCTTTTCTCGACCATCATAGTCAAACGAGCACTAAAATT
GTCACCCAAGAAGAAATGGTTCTCCCAGCAATAACCATTTGCACTTACGA
AGAGTTGCTCGTATATCGTCGTCGATTTATTGAAAAGGGACTAGTCGGAA
AACGTCCAAAAATGATCAAGTTTAGTGCGATGGATTGTGCAAAAGATTTG
ACCAAATGTGGCTATAATGGAACAACGTTCGTCAAGGTGCAAAATGTATC
GGCAGATTATAAACATAGATCGCTCCAGAATGATCTTGTGGTGTTTGACA
ATACTACAAATTGCTTTACCATCAGTAGCCAAATACAGAAAGCACCATCT
GACGTTCTTACTGCTCGGATTATCGCTAAGAGAGTAAGAGGCATCAATGA
GTGGAGTGAAATATATATAAACCCCTCTTTGGAAACCTTTCCTCAAGCAT
CTGCTGCTGTCTACTGGGCCGCTGAAGGCTTCTATCATGTCAccgttgaa
aagaaaattataaaaagactCGGATTACCGTATACTGATTGCGTTCGAGG
CTTAGGAACTTATGAACAGAACAAATTCACTGGCAACTACACCGTTAACA
AATGTTTGAAAGGATGCATTTTTGAAGAGGTTCTCATACGTTGTGGCGCT
ATACCAGTCATGTATAAAAAGCACTTGCGTAAACCTGTCACGTTCGACAA
CAAAACGGAAATTAATGAAACCTTTGCTTCGTCCTGCTTTAATAAAGTCG
AAGAGGATAACATCCTGGCCACGAAATGCAACTCAAGATGCCGCCTGGAC
CCTTGTCACCAAGAAGAATTTAGATTGATTCTTTCTCAAAATCCGGTCaa
aacagaaaactttttaGAACTTGCATTCACATATAAATCATTCTTACtgg
aaattgttgaagagataCCATCTTATCGTTGGCAagaattattttcgaat
tttggtggaTGTGTTGGTTTGATGACTGGTGCGTCGATTCTTTCGATCGT
CGAATTATTTATGTTCGGCGGTATAGTTGTCACGAACTCGTATttcaaaa
ttaagaacaagGTTCAATCAAAAGACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023481-exon-sc0000454-1491911889:114349..116452 | TCONS_00023481-exon-sc0000454-1491911889:114349..116452 | Clytia hemisphaerica | exon |
| TCONS_00023481-exon-sc0000454-1510915933:114349..116452 | TCONS_00023481-exon-sc0000454-1510915933:114349..116452 | Clytia hemisphaerica | exon |
| TCONS_00023481-exon-sc0000454-1575043694:114349..116452 | TCONS_00023481-exon-sc0000454-1575043694:114349..116452 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000454 | supercontig | sc0000454:114349..116452 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001873 | ENaC |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006814 | sodium ion transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005272 | sodium channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006814 |
sodium ion transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005272 |
sodium channel activity |
Blast
The following BLAST results are available for this feature:
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