|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023479 ID=TCONS_00023479|Name=TCONS_00023479|organism=Clytia hemisphaerica|type=transcript|length=1184bp
caggcgggtcgctcaaggccgcgcaactttggtaggatttgttggcttca
aatcctaccaaagagattgacctctagccttcggcttgaaactcaatgct
caAAATACCCTAATAAAATTACCTGAGAAAACATCCTTAAAATACAGTCC
GCGCGCTTTTTTATGAacattttctttagaaaatcaGCCGAAAATTAATT
CCGATAAGTCCGCTTTGTGTTACTAAAACAACTTGTTAGATTTGCAGATA
AAAACaattccactttcgatttcagagTAGTGGAGTTTTAGCTCAAAACG
TAAGAAGAGTGAACAGACAACCAGCCTGAAAATGAACCGTTTTAACTCAC
cgaatcaaagtcaatttcaacATAACTTCAATAGAAGACAAGATTCACCT
TACAGAAATCAACATCAGACGTCTTCATCAAAACATCATGGGGGAAAGcC
TCGAAAATCATTTGACTCCAACAATATTGAAGCTTATTTCAAACCATCCA
TGCTGGAAGACCCTTGGGCTAGGCTGGAAGAAGAAATGCGTCACAATCGA
AATAGACAAAATCAAAGCAAATAAGCGGCTTCAGATTCTTAAGGGGGATA
AAGTTGTCGTTGTTTGATACATGATTTTGTTGAGTATGTCAATTAGTACA
CAATGTGAAAAACAGAGAAAGACACCACGCCAGAATTAAAAAAGACTGTC
GTTTGAATGGCTTCCCATCAGAAAAAATTGCATTCAGTTTGGATCATCCC
CCATACAAAGGAAATCATCAATGAACTTGTCGAAGTGTTACCAAAAACAT
AAACTATACGAGAACTATACAGCATAAATGGCctgtaatatatttttatt
tacatCTTTTTTAGTTATATAATTTCATGTATTTATAATATCAAATCAGA
AGAAGGCTATAACTTGCCGAAAAGTGGAAAACTGTTCCAAAAATATTTGT
TCCttaataattttttcaacaattttgatttattgatcCAGCATCGAGCC
AGTACAGTATCACTGCACGTCTTAAAgtccaaaaaagagaaaaataagct
TTCCATTGAAAACCTCTCGAGACACCTAAGAAATCCTCTGGTCAAAATTA
GGTTGTTCtcgaaatttttcgatttttcagcaAGTAGGACCATCTGACCA
TGTCCCATCTCATTTTCAATATcgaaatgcttcg Run BLAST on NCBI transcript from alignment at sc0000454:249655..255743- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023479 ID=TCONS_00023479|Name=TCONS_00023479|organism=Clytia hemisphaerica|type=transcript|length=6089bp|location=Sequence derived from alignment at sc0000454:249655..255743- (Clytia hemisphaerica)
CAGGCGGGTCGCTCAAGGCCGCGCAACTTTGGTAGGATTTGTTGGCTTCA
AATCCTACCAAAGAGATTGACCTCTAGCCTTCGGCTTGAAACTCAATGCT
CAAAATACCCTAATAAAATTACCTGAGAAAACATCCTTAAAATACAGTCC
GCGCGCTTTTTTATGAACATTTTCTTTAGAAAATCAGCCGAAAATTAATT
CCGATAAGTCCGCTTTGTGTTACTAAAACAACTTGTTAGATTTGCAGATA
AAAACAATTCCACTTTCGATTTCAGAGTAGTGGAGTTTTAGCTCAAAACG
TAAGAAGAGTGAACAGACAACCAGCCTGAAAATGAACCGTTTTAACTCAC
CGAATCAAAGTCAATTTCAACATAACTTCAATAGAAGACAAGATTCACCT
TACAGAAATCAACATCAGACGTCTTCATCAAAACATCATGGGGGAAAGGT
AAGTTTTTTCTCATGTTATTTTAAAGTTTTTTAAATTGTGTAAAGGTTAG
TCACACTCGCACTACCAGACTACTAGCATAGACCACTTCTCACTTAGTTG
GGTTGTTTTTGTGATCTTGCTAAATCTCACTTTGGTTTTAGATTTTCAGC
TTGAAAACAAAGCTGTTTTTCAATGCAACTTTGCTAGACTAACCAAACAA
GACAAACCAAAACATAATGACATCACAGTGAATTGCATTGGAAGATATGG
GACCCGAAATACCCCTTGCTAGCACTTTTCTGTGAAACATCAAATCTCCA
AATTTTTACTATATATATATTTCTGCATCTAATAAGTTGTGTTTCAAGAA
AAATCTCTTTTTCTTATTTTTTCTTTTTTTCTTATTATACCCTTTTTTCA
ATATCCAATTTAATTAATGGCAAAATCTAATACATGGGAAATTTAAATAT
CAAGAAAGTGGCGCTAGTGTGACTAACCGTTTAATAGAATTTAATGTCTT
ATAGACAGGCAGCTGAGGTCACAAAAAAATAGGACGGGGTGCGAACAATC
CCAAACCACTTTTAATTGAAAATATACAACCTAGNGTCGTATCTATTGAA
AACAACTGTTTAAAGTTTGCTCGCAAACTTTGTAGCTACTGCACTTTTTT
ATGTGACCTCAGCTGCCTGACTATTAGAATAAGTGATGTAATGGGCTATT
CCAAAAATATATAGGCTGAGTGTTGGACGTCCTTAAAACATGTTTAAAGC
CGCTGCGCCCGTCGCAAGTCAGGGACTCCAGATTGCATTGGTTGGGTTTT
TGAGTGATTTTTGTGTTTGTGTTTTTCTTCTTGGCTTTTTAAACTTTATG
TCTATTGGTTTGTTGGTTCANCGGTAATATTTTAGTACCTGATGACGTCA
TGCGTGCCCATAGGCTAACTGAAAAAATTTTGAGAACCAACATAGACATA
TTATATACCAATCAAAGCGTTTTTTAACGTAGATTAAGAAAATGGTCAGT
AACCATATCTGAAAATTTTACTATAAAAAGTTAGAACGTTTTTCCTTTAT
GTCCGTAACGTCAATTTTACCTGTCCGAGACGANATCAAAAAAATGGAAA
AAAACGTATAATTATAAAAATATTAGTGCCTTTTTATGTTTCATCTTTAT
TTTATTTAGTATTTTCAACACTTTTTCTCCTTGAGGTCAGATCTCTGATC
TTCACCATATATGTATAACATGGGAATTGACAAACTTTTGTCACCGACCC
CAACTTTGAATAAAAATAGAACGCAACGTCCTATTGACTCAGTCCAACAT
ATTAAATTACTCCAGCAATTCTGGCGGGAAATTATCTGCTCCGTATTATA
GAGATAAAATTCTTTATACTTTGTAGCATGTTGCACGGGAAAATTTGCAT
GGCTATCGTATGCTAAATTGGGAGAATGTAGTAGCATGCCAATTTGAACT
GATTTAGTTTTACAATGGGCCGTCACATTCCCCTAAAGGAGTATTATCTT
GTGATATTTCTTTGCAACAAATAAATATTCACAGCCCACACCCCATCCCC
TGAACATCCAATCAGCATCTTGCATGGCTCCTCCTGAATCCAATCTTTCT
GATTTTAATGATGGCAATGGCTTTGGTTACAAGTTAGGTTTTCACCAGGA
AAAATGGAGCACAGGTTTGCATGCAGTAGCTCATGGCCATAGATTTATAA
AGCGCAAAGGGCTAGATATCGTGCTTCAAGACATCGCAGGCAAAAAAAGT
GAATATCGCAAGAAATATAGTTTCTATTGTTTCCAAAAACCCTCGAAGCT
TTTGATCTGTTGAGCACTGAAATTCCATTGTAATGTCATGTGACCTAGGT
AGGGTTTCCGACCTAACTACGGCACACTTTTCAGCAAAAGCACAATATCT
AGCCCTCGGGCTTTATAAATCTATGGCCATGAGCCGTGACAATTGGAATG
ATAATTCTTTGGTCATAATTTCAATTTCATTTAGCCTCGAAAATCATTTG
ACTCCAACAATATTGAAGCTTATTTCAAACCATCCATGCTGGAAGACCCT
TGGGCTAGGCTGGAAGAAGAAATGCGTCACAATCGAAATAGACAAAATCA
AAGCAATGANACGCCCTATTGACTCAGTCCAACATATTAAATTACTCCAG
CAATTCTGGCGGGAAATTACCTGCTCCGTATTATAGAGATAAAATTCTTT
ATACTTTGTAGCATGTTGCACGGGAAAATTTGCATGGCTATCGTATGCTA
AATCGGGAGAATGTAGTAGCATGCCAATTTGAACTGATTTAGTTTTACAA
TGGGCCGTCACATTCCCCTAAAGGAGTATTATCTTGTGATATTTCTTTGC
AACAAATAAATATTCACAGCCCACACCCCATCCCCTGAACATCCAATCAG
CATCTTGCATGGCTCCTCCTGAATCCAATCTTTCTGATTTTAATGATGGC
AATGGCTTTGGTTACAAGTTAGGTTTTCACCAGGAAAAATGGAGCACAGG
TTTGCATGCAGTAGCTCATGGCCATAGATTTATAAAGCGCAAAGGGCTAG
ATATCTTGCTTCAAGACATCGCAGGCAAAAAAAGTGAATATCGCAAGAAA
TATAGTTTCTATTGTTTCCAAAAACCCTCGAAGCTTTTGATCTGTTGAGC
ACTGAAATTCCATTGTAATGTCATGTGACCTAGGTAGGGTTTCCTACCTA
ACTACGGCACACTTTTCAGCAAAAGCACGATATCTAGCCCTCGGGCTTTA
TAAATCTATGGCCATGAGCCGTGACAATTGGAATGATAATTCTTTGGTCA
TAATTTCAATTTCATTTAGCCTCGAAAATCATTTGACTCCAACAATATTG
AAGCTTATTTCAAACCATCCATGCTGGAAGACCCTTGGGCTAGGCTGGAA
GAAGAAATGCGTCACAATCGAAATAGACAAAATCAAAGCAAATAAGCGGC
TTCAGATTCTTAAGGGTAAGAAATTTCTAAAGAAAAAATAAAATCCTCAT
AATTTATTCCAAACTGTATGACTTTTATACTTAATATATGTCCATCTCAA
AAACCTATTCAATCACATTTAGAAATTGAATATCTATTGATTACCGTCAA
CTGCTCTAACTTGGGACGATTGGTCGAAGCATGGGACTGTTGCATATCTG
GTCTTTATTTTCACATTACCGTCAACTGCTCTAACTTGGGACGATTGGTC
GAAGCATGGGACTGTTGCATATCTGGTCTTTATTTTCACTTACTGTAAAA
TCGAAAGACAAATCGTGTAGTTTTAACTACGCCGTTCCTTAACTCAAATC
AAATGACTTTGGATGTTCGGTGAAATGTTGGTCGAATTGCCATCCCATGT
TTTGTCAGATAGTCCTAAGGTAGAGCAGTTGACAGTACAAAGAAAATTGT
TATCTTAAGTCCGTCTGGATAATGAGTTTTGAGGATTTATCAGCTTTTTT
CGGGCCCACTAATTTTTTATAATATTGGCCTGGGAACCCAAGCTCAAAAT
TTTAGAAAAAACAAAATATACCTTACCTCGCAAAATTCTAAAATTATAGA
GCTTGGTGCAGGTAGATTAGTCTGATACAAAATGTTTAAACCCTTGTTGA
CAGACAAGAAACCCAAACAGACACGTGTTGTCAACTTACCATAAAAACTC
TTTGACAAGCTCTAAAACTTCTAAAAACGTATTTTAACATCCTGCCAATA
TAAATTATCTATGTTTTCATTTTCATTTGTTTTCCTTTTTGGACCTACCC
CGGTGGGGTGGAGGTCCTATAAATTAACCTGTGTTTGTTCGTCCGTTCGT
TCGTTCGTCTATTACCAACTTTTCTCAGGATCGAATCATAGGAATCTTTT
GATTTTTGGTACAAAGGTGCAAAATGGTGGTGGCAGAGCCCGATTTAAAA
AAAAAAATTTTTTGGGCAAATTTCAGCCAGAAAACGGCTAAAAAAGGGCT
TTTAAGACTTTGTTAAAAAATTGGATCGTTGATTTTTTTCTGATTTTTTT
GCATGAAAGTAGGGTAGCATCATTGATAAAAGATGGCTGGAGCAGATTTT
CATAATAAAAATTTTCGGCTCAAAAAACAAATCTTTATCCATAAGAATCG
CTATTTATAAGCATAGATCAATGTTCTTGTACTTCATATTATTATTTTTA
TTAGTTTTTTTTTTTAAGATGAAAATGTCACGGTGGAGGGCAATGTTTTC
TAGAAACACTTATTATTTTTTTGGCTGAAAAACGAATCTCTATCGATAAG
AATACTCTCGGGTACCTAATAGCCGGGGGGTTTGGAATAAGCGGGGCGGT
TGGAAAAAATCTCAAAACTTAATAAGCGGGGGGGTTGGAATAAAAATGTC
CTGGGTGGAAAACTTTTGAAAAGGAGGCTAAACCAGCAGAATTAGGACAA
AAGAGGAAACTTTCAAAAACATTTTCCCAAAAATCAATAAGCGGGGGGGG
GGGGGGTGGAATAAGAATGTCCTGGGTGGAAAATTTTCGAAAAATTAATT
AGCGGGGGGGACGGCTATTAGGTACCCGAGAGTAACTATTTATTTAAAGG
CTAGATCAATGTCCATAGCCAAATTATTATTTTTATTATTATTTTTTATT
TTTATTATTATTTTTTCTAAAAGAAGAAAAATAATGTCACGGTAGAGCGC
GATGGTTTGAGTTTTCTAGAAACCTTTTTTATTAAGATGTGCATTTTTCT
GATAGTGGATTGTTTTAAAGAAAATAGATATTATCAAAATGTGCGCAAAA
GTACTGCCGTTACTGCAAAAGAAATTTGCCGAAATCTGACCAATCGGACT
GGACCTGCATTGCAGGGAAAAATCTCCCTGTAGGCGAGTTACCTGCACCA
AGTGTTAAACAAGTAGCAAAAATATCAAGAAACTAGACCATGACCAAGGT
TTAATGCTTAGATTCCCAGGCTATATTTATATCTTCTTTATTTAATCAAA
ACTGCTCACAAAGTGTTAAATATTTTTTTCGAAAATTGCTTAAGGTTTAT
TTACACAAGGTATAACTTTTTGATTAATAATCTGATATTTATTCTTCAGG
GGATAAAGTTGTCGTTGTTTGATACATGATTTTGTTGAGTATGTCAATTA
GTACACAATGTGAAAAACAGAGAAAGACACCACGCCAGAATTAAAAAAGA
CTGTCGTTTGAATGGCTTCCCATCAGAAAAAATTGCATTCAGTTTGGATC
ATCCCCCATACAAAGGAAATCATCAATGAACTTGTCGAAGTGTTACCAAA
AACATAAACTATACGAGAACTATACAGCATAAATGGCCTGTAATATATTT
TTATTTACATCTTTTTTAGTTATATAATTTCATGTATTTATAATATCAAA
TCAGAAGAAGGCTATAACTTGCCGAAAAGTGGAAAACTGTTCCAAAAATA
TTTGTTCCTTAATAATTTTTTCAACAATTTTGATTTATTGATCCAGCATC
GAGCCAGTACAGTATCACTGCACGTCTTAAAGTCCAAAAAAGAGAAAAAT
AAGCTTTCCATTGAAAACCTCTCGAGACACCTAAGAAATCCTCTGGTCAA
AATTAGGTTGTTCTCGAAATTTTTCGATTTTTCAGCAAGTAGGACCATCT
GACCATGTCCCATCTCATTTTCAATATCGAAATGCTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023479-exon-sc0000454-1575043694:255296..255743 | TCONS_00023479-exon-sc0000454-1575043694:255296..255743 | Clytia hemisphaerica | exon |
| TCONS_00023479-exon-sc0000454-1575043694:252329..252474 | TCONS_00023479-exon-sc0000454-1575043694:252329..252474 | Clytia hemisphaerica | exon |
| TCONS_00023479-exon-sc0000454-1575043694:249655..250244 | TCONS_00023479-exon-sc0000454-1575043694:249655..250244 | Clytia hemisphaerica | exon |
| TCONS_00023479-exon-sc0000454-1510915933:255296..255743 | TCONS_00023479-exon-sc0000454-1510915933:255296..255743 | Clytia hemisphaerica | exon |
| TCONS_00023479-exon-sc0000454-1510915933:252329..252474 | TCONS_00023479-exon-sc0000454-1510915933:252329..252474 | Clytia hemisphaerica | exon |
| TCONS_00023479-exon-sc0000454-1510915933:249655..250244 | TCONS_00023479-exon-sc0000454-1510915933:249655..250244 | Clytia hemisphaerica | exon |
| TCONS_00023479-exon-sc0000454-1491911889:255296..255743 | TCONS_00023479-exon-sc0000454-1491911889:255296..255743 | Clytia hemisphaerica | exon |
| TCONS_00023479-exon-sc0000454-1491911889:252329..252474 | TCONS_00023479-exon-sc0000454-1491911889:252329..252474 | Clytia hemisphaerica | exon |
| TCONS_00023479-exon-sc0000454-1491911889:249655..250244 | TCONS_00023479-exon-sc0000454-1491911889:249655..250244 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000454 | supercontig | sc0000454:249655..255743 - |
Blast
The following BLAST results are available for this feature:
|
