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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023182 ID=TCONS_00023182|Name=TCONS_00023182|organism=Clytia hemisphaerica|type=transcript|length=4947bpRun BLAST on NCBI protein sequence of TCONS_00023182-protein >TCONS_00023182-protein ID=TCONS_00023182-protein|Name=TCONS_00023182-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1355bp MGDSEAAKLQKHLNLLRQEYVKLQNKTLDLEQKLAAVSATSGNVSEDTYARun BLAST on NCBI transcript from alignment at sc0000446:32768..94435+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023182 ID=TCONS_00023182|Name=TCONS_00023182|organism=Clytia hemisphaerica|type=transcript|length=61668bp|location=Sequence derived from alignment at sc0000446:32768..94435+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000446:32768..94435+ >TCONS_00023182 ID=TCONS_00023182|Name=TCONS_00023182|organism=Clytia hemisphaerica|type=CDS|length=109836bp|location=Sequence derived from alignment at sc0000446:32768..94435+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023182 vs. Swiss-Prot (Human)
Match: ANFY1 (Rabankyrin-5 OS=Homo sapiens GN=ANKFY1 PE=1 SV=2) HSP 1 Score: 689.878 bits (1779), Expect = 0.000e+0 Identity = 331/627 (52.79%), Postives = 446/627 (71.13%), Query Frame = 2
Query: 2288 RTALHVAITHKQRDTIRCFVDHAENASRGGLSGRLPIATDLNLQDSESQSLLWLALATQQEDVAKQLVDAGAYVDQEDDRMETLLHRSIMYKDSDATLFLLQNGANINKRNRENLSPLQMAIQLHLIPIVDALCMMGADVNSSDEHGNTALLIALKSHQTDTASTLVKHGADTTAWNTGVNGCSWTLLHRAIFESDEDTACFLIRNKCDVNSARKPGADGQGGTEAWDGLTPLHLSCGSGQDQIVQCLIEHNADINAQDSEGRTPIHIAITTKNPIITRILLSHPEINFNLKDRLGQTPFVVAMSCRDNDVAASILTREPSAAEQFDNKGRNYLHIAVSNNDVDSVLFLISIEVNVNSVIKDGSSRTPLHLAIPTGNEIIVRHLLLAGAQVNALDKQRQAPLHIATIEDKPAILEVLLQNGANPDLVDTNLNNGLHMACQHGNMSTVRVLLTESNINAESYNAKGHNPLHTLAVYSKENAASIFELFRQTMPNYPFDAIDASESTALFLAYSNGAVGLCCALLRSGARIGTINKHGMSIFNAPVATKKLLFKLLDMLNTEPAWSDGPSCHQCGQNFNITTRKHHCRHCGRLLCNKCSQQQMPILKYELSKPVRVCEICFDFLTTGNL 4168
+T LH+AI + D + ++ NA + L I D +L+DS Q++L LAL T +A QL+ +GA ++ +TLLH +I +DS + LFLL++ A+IN R ++ + LQ+AI+ L +VDA+C GAD++ DE GN L +AL ++ D ASTLV+HG D T W G GC TLLHRAI E++E TACFLIR+ CDVNS R+PGA+G+G EA DG TPLHL+ G ++ VQCL+E A++NAQD+EGRTPIH+AI++++ +I ++L+SHP+I+ N++DR G TPF AM+ ++N A +IL RE AAEQ DNKGRN+LH+AV N+D++SVLFLIS+ NVNS ++D S TPLHLA+ G+EIIVR+LLLAGA+VN L K RQ LH+A +D P I VLL+NG + VD N NN LH+A HG ++ +RVLLTE ++AE++N +G +PLH L Y KENAA+IF+LF + MP YP D DA ST L LAY G LC A++RSGAR+G N G++IFN VATK+LLF+LLDML+ EP W DG C++C F +TTRKHHCRHCGRLLC+KCS +++PI+K++L+KPVRVC ICFD LT G +
Sbjct: 544 QTPLHMAIAYNHPDVVSVILEQKANALHA--TNNLQIIPDFSLKDSRDQTVLGLALWTGMHTIAAQLLGSGAAINDTMSDGQTLLHMAIQRQDSKSALFLLEHQADINVRTQDGETALQLAIRNQLPLVVDAICTRGADMSVPDEKGNPPLWLALANNLEDIASTLVRHGCDATCWGPGPGGCLQTLLHRAIDENNEPTACFLIRSGCDVNSPRQPGANGEGEEEARDGQTPLHLAASWGLEETVQCLLEFGANVNAQDAEGRTPIHVAISSQHGVIIQLLVSHPDIHLNVRDRQGLTPFACAMTFKNNKSAEAILKRESGAAEQVDNKGRNFLHVAVQNSDIESVLFLISVHANVNSRVQDASKLTPLHLAVQAGSEIIVRNLLLAGAKVNELTKHRQTALHLAAQQDLPTICSVLLENGVDFAAVDENGNNALHLAVMHGRLNNIRVLLTECTVDAEAFNLRGQSPLHILGQYGKENAAAIFDLFLECMPGYPLDKPDADGSTVLLLAYMKGNANLCRAIVRSGARLGVNNNQGVNIFNYQVATKQLLFRLLDMLSKEPPWCDGSYCYECTARFGVTTRKHHCRHCGRLLCHKCSTKEIPIIKFDLNKPVRVCNICFDVLTLGGV 1168 HSP 2 Score: 442.965 bits (1138), Expect = 1.821e-131 Identity = 240/539 (44.53%), Postives = 344/539 (63.82%), Query Frame = 2
Query: 110 MGDSEAAKLQKHLNLLRQEYVKLQNKTLDLEQKLAAVSATSGN-VSEDTYASQLLKTSNDLHDKETFTDITVSFSGKKVRAHRVILAARSKKWCTGDLADQNEIELEEASVEVGTALMKWVYTDKADIRTDESFIMDLVRVANRYSLGGLRNRCERILMSSVSVSNCIRFYQTAEDIGATELKKYCAEIITNHWDDLETKDFVGMSAPLLYDMFKSKSNFPLHFAVRHHREDIVFLYLIEFNLQLPGKLNEVEPETGLTPLQIALNERQESIANTLVQHNCDINSPNSEGKTLLHRSIEDGDSYAANFLIKQGADVKAITSDKNETTLHLAASFQPISVRAGSGKIASGEDMAGVCRLLLDYGVNINSVDVSGKTAIHRSIESKTEDVFSVLLADNNIDLEIRDNNGHVPLWMAIL-------ASGNKIEE------EASEKTGFASRLVDRGSSADAINHLTGDSLLHQAAASNNQSAGLFLIEHGASVNHVNKAGESPLHSAARNGLVELVDKLLKSGCNPNIQTIESEVLKTQSSA 1684
M + E AKL+KHL LLRQEYVKLQ K + E++ A ++A + S +++ S+LL DL+++E ++D+ + + + AH+ +LAARS W +L+ E++L +A+ EV +++W+YTD+ + R D+ F+ +L+++ANR+ L LR RCE+ +MS V+V NCIRFYQTAE++ A+ L YCAEII +HWDDL +DF MSA LLY M KSK+ +PLH A++ RED+VFLYLIE + QLPGKLNE + G L +AL+ R ESIA TLV H D++ + G +LLH+ I+ GD +AA FLIK GA V A T ET LHL A + S + S + S +MA + LL G N N D G+T +H SI + E VFS LL +DLE++D+ G LW+A+ S N E+ + ++ FA+RL+ RGS DA + TG+ LL +AA + N++A LFL +GA VNH NK GE+PLH+A R+GL L +LL+ G NPN+QT E+ L ++++
Sbjct: 1 MAEEEVAKLEKHLMLLRQEYVKLQKKLAETEKRCALLAAQANKESSSESFISRLLAIVADLYEQEQYSDLKIKVGDRHISAHKFVLAARSDSWSLANLSSTKELDLSDANPEVTMTMLRWIYTDELEFREDDVFLTELMKLANRFQLQLLRERCEKGVMSLVNVRNCIRFYQTAEELNASTLMNYCAEIIASHWDDLRKEDFSSMSAQLLYKMIKSKTEYPLHKAIKVEREDVVFLYLIEMDSQLPGKLNEAD-HNGDLALDLALSRRLESIATTLVSHKADVDMVDKSGWSLLHKGIQRGDLFAATFLIKNGAFVNAATLGAQETPLHLVALY---SSKKHSADVMS--EMAQIAEALLQAGANPNMQDSKGRTPLHVSIMAGNEYVFSQLLQCKQLDLELKDHEGSTALWLAVQHITVSSDQSVNPFEDVPVVNGTSFDENSFAARLIQRGSHTDAPDTATGNCLLQRAAGAGNEAAALFLATNGAHVNHRNKWGETPLHTACRHGLANLTAELLQQGANPNLQTEEALPLPKEAAS 533 HSP 3 Score: 104.375 bits (259), Expect = 3.450e-22 Identity = 86/277 (31.05%), Postives = 129/277 (46.57%), Query Frame = 2
Query: 860 VEPETGLTPLQIALNERQESIANTLVQHNCDIN----SPNSEGKTLLHRSIEDGDSYAANFLIKQGADVKAI-----------TSDKNETTLHLAASFQPISVRAGSGKIASGEDMAGVCRLLLDYGVNINSVDVSGKTAIHRSIESKTEDVFSVLLADNNIDLEIRDNNGHVPLWMAILASGNKIEEEASEKTGFASRLVDRGSSADAINHLTGDSLLHQAAASNNQSAGLFLIEHGASVN-HVNKAGE-SPLHSAARNGLVELVDKLLKSGCNPN 1639
V E G PL +AL E IA+TLV+H CD P +TLLHR+I++ + A FLI+ G DV + + +T LHLAAS+ + + LL++G N+N+ D G+T IH +I S+ + +L++ +I L +RD G P A+ NK E ++ A+ VD G + LH A +++ + LFLI A+VN V A + +PLH A + G +V LL +G N
Sbjct: 683 VPDEKGNPPLWLALANNLEDIASTLVRHGCDATCWGPGPGGCLQTLLHRAIDENNEPTACFLIRSGCDVNSPRQPGANGEGEEEARDGQTPLHLAASW----------------GLEETVQCLLEFGANVNAQDAEGRTPIHVAISSQHGVIIQLLVSHPDIHLNVRDRQGLTPFACAMTFKNNKSAEAILKRESGAAEQVDN----------KGRNFLHVAVQNSDIESVLFLISVHANVNSRVQDASKLTPLHLAVQAGSEIIVRNLLLAGAKVN 933 HSP 4 Score: 100.523 bits (249), Expect = 5.605e-21 Identity = 128/488 (26.23%), Postives = 197/488 (40.37%), Query Frame = 2
Query: 2636 PLQMAIQLH-----LIPIVDALCMMGADVNSSDEHGNTALLIALKSHQTDTASTLVKHGADTTAWNTGVNGCSWTLLHRAIFESDEDTACFLIRNKCDVNSARKPGADGQGGTEAWDGLTPLHL-----------SCGSGQDQIVQCLIEHNADINAQDSEGRTPIHIAITTKNPIITRILLSHPEINFNLKDRLGQTPFVVAMSCRDNDVAASILTREPSAAEQFDNKGRNYLHIAVSN----NDVDSVLFLISIEVNVNS----VIKDGSSRTPLHLAIP---TGNEIIVR---------HLLLA--GAQVNALDKQRQAPLHIATIEDKPAILEVLLQNGANPDLVDTNLNNGLHMACQHGNMSTVRVLLTESNINAESYNAKGHNPLHTLAVYSKENAASIFELFR----------QTMPNYPFDAIDASESTALFLAYSNGAVGLCCALLRSGARIGTINKHGMSIFNAPVA---TKKLLFKL 3946
PL AI++ + +++ + +N +D +G+ AL +AL A+TLV H AD V+ W+LLH+ I D A FLI+N VN+A G E TPLHL S QI + L++ A+ N QDS+GRTP+H++I N + LL +++ LKD G T +A+ HI VS+ N + V + + NS +I+ GS H P TGN ++ R L LA GA VN +K + PLH A + LLQ GANP+L L + + +++++ A+S + + PLH Y+ + S+ + Q +P++ D+ + T L LA G + LL SGA I G ++ + + +K LF L
Sbjct: 221 PLHKAIKVEREDVVFLYLIEMDSQLPGKLNEADHNGDLALDLALSRRLESIATTLVSHKADVDM----VDKSGWSLLHKGIQRGDLFAATFLIKNGAFVNAATL------GAQE-----TPLHLVALYSSKKHSADVMSEMAQIAEALLQAGANPNMQDSKGRTPLHVSIMAGNEYVFSQLLQCKQLDLELKDHEGSTALWLAVQ-----------------------------HITVSSDQSVNPFEDVPVVNGTSFDENSFAARLIQRGS-----HTDAPDTATGNCLLQRAAGAGNEAAALFLATNGAHVNHRNKWGETPLHTACRHGLANLTAELLQQGANPNL---QTEEALPLPKEAASLTSL----------ADSVHLQ--TPLHMAIAYNHPDVVSVILEQKANALHATNNLQIIPDFSLK--DSRDQTVLGLALWTGMHTIAAQLLGSGAAINDTMSDGQTLLHMAIQRQDSKSALFLL 642 HSP 5 Score: 97.8265 bits (242), Expect = 3.770e-20 Identity = 148/625 (23.68%), Postives = 229/625 (36.64%), Query Frame = 2
Query: 2297 LHVAITHKQRDTIRCFVDHAENASRGGLSGRLPIATDLNLQDSESQSLLWLALATQQEDVAKQLVDAGAYVDQEDDRMETLLHRSIMYKDSDATLFLLQNGANINKRNR-ENLSPLQMA-----------IQLHLIPIVDALCMMGADVNSSDEHGNTALLIA---------------------LKSHQTDT------------------------------------ASTLVKHGADTTAWNTGVNGCSWTLLHRAIFESDEDTACFLIRNKCDVNSARKPGADGQGGTEAWDGLTPLHLSCGSGQDQIVQCLIEHNADINAQDSEG-------------------RTPIHIAITTKNPIITRILLSHPE------------INFNLKDRLGQTPFVVAMSCRDNDVAASILTREPSAAEQFDNKGRNYLHIAVSNNDVDSVLFLISIEVNVNSVIKDGSSRTPLHLAIPTGNEIIVRHLLLAGAQVNALDKQRQAPLHIATIEDKPAILEVLLQNGANPDLVDTN----LNNGLHMACQHGNMSTVRVLLTE-----------SNINAESYNAKGHNPLHTLAVYSKENAASIFELFRQTMPNYPFDAIDASESTALFLAYSN 3826
LH AI ++ D + ++ + +LP LN D L LAL+ + E +A LV A VD D +LLH+ I D A FL++NGA +N +PL + + + I +AL GA+ N D G T L ++ LK H+ T A+ L++ G+ T A +T C LL RA +E A FL N VN K W G TPLH +C G + L++ A+ N Q E +TP+H+AI +P + ++L +F+LKD QT +A+ + +AA +L + + + G+ LH+A+ D S LFL+ + ++N +DG T L LAI ++V + GA ++ D++ PL +A + I L+++G + L LH A N T L+ +N E G PLH A + E F + +A DA T + +A S+
Sbjct: 222 LHKAIKVEREDVVFLYLIE--------MDSQLP--GKLNEADHNGDLALDLALSRRLESIATTLVSHKADVDMVDKSGWSLLHKGIQRGDLFAATFLIKNGAFVNAATLGAQETPLHLVALYSSKKHSADVMSEMAQIAEALLQAGANPNMQDSKGRTPLHVSIMAGNEYVFSQLLQCKQLDLELKDHEGSTALWLAVQHITVSSDQSVNPFEDVPVVNGTSFDENSFAARLIQRGSHTDAPDTATGNC---LLQRAAGAGNEAAALFLATNGAHVNHRNK-----------W-GETPLHTACRHGLANLTAELLQQGANPNLQTEEALPLPKEAASLTSLADSVHLQTPLHMAIAYNHPDVVSVILEQKANALHATNNLQIIPDFSLKDSRDQTVLGLALWTGMHTIAAQLLGSGAAINDTMSD-GQTLLHMAIQRQDSKSALFLLEHQADINVRTQDG--ETALQLAIRNQLPLVVDAICTRGADMSVPDEKGNPPLWLALANNLEDIASTLVRHGCDATCWGPGPGGCLQTLLHRAIDENNEPTACFLIRSGCDVNSPRQPGANGEGEEEARDGQTPLHLAASWGLEETVQCLLEFGANV-----NAQDAEGRTPIHVAISS 813 The following BLAST results are available for this feature:
BLAST of TCONS_00023182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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