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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023126 ID=TCONS_00023126|Name=TCONS_00023126|organism=Clytia hemisphaerica|type=transcript|length=1372bp
ATGCATTGTATATCAACACCCGTCCTTAACAAAGATAAGAAATTAAACCC
AAGAAGTGGTAAGTTTTATATGCATTGTATACCCACGCCCGTCCTTAACA
AAGATAAGAAATTAAACCCAAGAAGTGGAATCTCAACCAAACATAGTCTT
CGTATGGCAACGCCCGCTTTCAGCCCTGCACCTTCAACTTTTGCATCATC
TAAGAAGGAGAGATTACCAACTTCAAAACAAATGCCCTCCACCGCAGAAC
TGTACCGTTTCATGTCATTGAATTACGATGGATCTGTGTCAAGGAATCTT
GATCGAAATTTGAACGGTTCATTCGTCCAAGCAGATACCTCACCTGATGG
GTCACCCTCTCCCAAAAAGTTACACGAGCACGCGGAAAATATTCGTCGCG
CGGTCGAAGAGCATCACAATAAAAGTATTGAAGAGGGTGTCACTGAACTA
CAAAAAACTCCTAGATCGCACACAAGTTCCAACACTGGATTTAGTGGTAG
CGAAATTCCGTTCTATTTAATGGAGTAGGTACTGATGATCACGTATGGTT
TATAGTTCAATAAATCTCAATGGGTTGTTGCTAAGCAACGGGAGAGCACT
TTCATTTGTCATATTTGATATGACTGAATGCAGAATCAAACATTGGATTG
AAAAGGGAATGGTTTCAATCAGTACATCGGGATTTCTGTCATTAGCTTCA
CTGGGAAGAAATCAATTCTCTcatattaacttatttattcatTCGAGGAG
GATACCAGAAAGTCTTCTTCCAGAAGCTTCGGTTATACAACAATGCGCCT
AAGGATGCATGAAAGAGGAGTGGAACCGAGTTTATAAGGGGcgaatgacg
tcaatttttagaATTCAATATAATGAAGAACTTGCAGGCAATAAAGACAT
TTCATGCCATTCGACTCTGGTCAAGTAGATGCCAGTCCTCTGGTTGTGAT
AGGGTTGGTGTCATACGCATCGAATTgccaaattcatgatatgcaccact
gcaatgacttcacgaaattatgcaaccttctgtttttgttccacccaata
cgtcactttttctattggtTAAGTGACGTATTaggattttcaaagttttc
agaagactctccagtggtgcatatcatgaattgggtgcgaaattttcaaa
gttcccagaagactctccagtggtgcatatcatgaatagtacTACTGAGT
AGATTATATtgaatattgagattttagaaACATTTCCATTCAGTTTGTTC
GCCTTGTAtttgtagtaatatttttttaaactgtatttaggataaaaata
aaaatattttttctcgaaatttattcttccaaattaatttgaaatataCC
ATAAATCCTTGCATATCTTCAG Run BLAST on NCBI protein sequence of TCONS_00023126-protein >TCONS_00023126-protein ID=TCONS_00023126-protein|Name=TCONS_00023126-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
MHCISTPVLNKDKKLNPRSGKFYMHCIPTPVLNKDKKLNPRSGISTKHSL
RMATPAFSPAPSTFASSKKERLPTSKQMPSTAELYRFMSLNYDGSVSRNL
DRNLNGSFVQADTSPDGSPSPKKLHEHAENIRRAVEEHHNKSIEEGVTEL
QKTPRSHTSSNTGFSGSEIPFYLME Run BLAST on NCBI transcript from alignment at sc0000443:261365..266068- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023126 ID=TCONS_00023126|Name=TCONS_00023126|organism=Clytia hemisphaerica|type=transcript|length=4704bp|location=Sequence derived from alignment at sc0000443:261365..266068- (Clytia hemisphaerica)
ATGCATTGTATATCAACACCCGTCCTTAACAAAGATAAGAAATTAAACCC
AAGAAGTGGTAAGTTTTATATGCATTGTATACCCACGCCCGTCCTTAACA
AAGATAAGAAATTAAACCCAAGAAGTGGTAAGTTTTAACCATTATTGTTG
GTGTATTGTGTTGTACATGACTGTAATCTTAAGGGGGCGTACGGCGTTTG
CTATTTCCGAAATACCGAATAATTTTGCTAAAATTTCCGAAATTCCGTAA
AAAAAATACTTGCAATTCCGATACCGACTTTTCTGGGTATATTTCCTAAT
TTTAACTAATTTTTCATCAAATTTGTTTTTTCATGTATAAATTCCGAAAA
AGGAGGATAAAAACTTTATATACCGAAATTCCGAAGCAAAAAATCATGGA
TTTCCGATACCGAAGCAATTTCAGCATTCCGAAATACTGAAGGAATTTTG
CCCGATTTCCGAAATTCCGAAGAAAAAAGGGTCGATTTCCGCAATTCCGA
AATACCGTACGCCGTAACCTTAAGGTTTTGCTCAAATCTCCAACTTGTCG
CAAAAATCGACGTCCCTTGATAGAAGATGACTTCCATTATCCATCCCAAG
ACTTAGACCATGTTTAGAAGTTACTATTTAGTATCGCTTTAGTTGGTTTT
TGAACTGTTTATTGGTTTAGAAACGTTTCGGAGCAACAAAAGGGAGCAGT
AATTATTCTTTCGTAACGTAGTGGTATAGTGGTTATCGTGCTTGACTTCT
GTCCAGAAGGCCCGAGTTCGATACCCATCGTGGCACTACGATTCACTTGG
CAAGTGAATGCTCCTTCGTCCGGGTCAACATATGCCATGTGAGGGGAATT
GGGTACCATTACTCCGATCAAAGAGTATGGGTAGATATTACGGACATTGT
GATGTGCTGAGACACTTAAGAGGTTCTACATCTGCGAGGACATCCTAAAT
ACATCGTGGGTAGGACCCATTCCGATGCATCGGAGGGCATATCTATTTAT
CTATCTATCTATCAATTATTCTTTCTTGACTCCGAAACATACTTATTTAA
CTGATTTGCGCTCAAGTCGCCCAACAGAAGTGAAACCTGTCTGTGTACTT
GGAGTAAAAATTGATTTTCATTTTTTTCTTCTTGGTATGAAAGTTCTTTC
ACCCAGTTCAGTCAATTTTTACTTTCAAAAAAGCTCTGAAACGGCATATT
TTCAATTAGAAATTTATTGTTACCAGTTGTCTTTCTTGTTTTTAACTTTA
TTTTAATTTAATTCATATTCATTTATTACAGTGGCCCCTGGCGGAGACGC
TAATTTTTTTTCCGTGAACGGACGGAAGTATCTTCGACGGTCAGAAGTAT
CTTCGACGGTCAGAAGTATCATCTTTTGACGGTCGGAAGTACCATTTTTA
ATTTTTCCTATCCGTCATTCCGTGGTTCAGGGGGTATTGGGTCATTACCA
ATCAATTAGGTAGGGTCAGGGTTGCTAGTAACGGCTTGTCACNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGTTGCTAGTAACGGCTCGAATTTCAGTCAGTTTAAAAA
AGGGGTACTTTTACCCATATTATAATAACATTACCCCCGTCTTTTGCCAG
TTCGGCATAATATGTTATGAATTGCGTTAATTTGCTGTGCGGTGATGGCT
CAACGGATAGAGCGCTGGCTTCCAAATCTGAAGGTCTCTCTTTGGTGGTG
GTTCGAATCCCACTCGGTGCGAAAATTAGACAGGTCAAAATTGATGGACA
AATGATTGACAAGTATGAAAACTCAGTCAGAAATGAGAATCTAAGTCTCA
GAAAGTAGAAAAAAACAGATAAGGTGAAAGATAGGTAAGGGAAAATGGGC
CGTCAAAAGATGATACTTCTGACCGTCGAAGATACTTCCGTCCGTTCACG
GAAAAAAAATTTGCGGCGGAGACAATGGCTGAGCTGCCTAAAAAAATGCC
ACTCAAAATATTATTTATTGTTATTGTTATTATTGTTATACAGATTTACA
AGCTAGGCTCACGATGGGCCTCTAACCGGTCTTCTTTCACATTCCTCTTG
TAACAAATTTTTGTGGATGGTTTTTCCATGCATCATTCAGTTTCTCTTTA
AACGACTTAATCAATTGTGCGGATACAACTTCTCTTGGTAGTTTATTCCA
CGTTGGCACACATCTATAGTAAAACGACTTAGTTTGGGGTCCATTGAAGC
CGTCATTAGCAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTGAAGCCGTCATTAGCAAAGTTTGGTAAAAGCTCTTTGGAATGTCTT
CGTTTAGGACGTGCACGGCTGATTAGTTTTGAAGGTATAGTATCTTTGTC
GTATCATTGTTGTTATAGGAATCTCAACCAAACATAGTCTTCGTATGGCA
ACGCCCGCTTTCAGCCCTGCACCTTCAACTTTTGCATCATCTAAGAAGGA
GAGATTACCAACTTCAAAACAAATGCCCTCCACCGCAGAACTGTACCGTT
TCATGTCATTGAATTACGATGGATCTGTGTCAAGGAATCTTGATCGGTAA
TTACCTTATCAGCCAAAACTTAGTCGGCCCTTACTGACTAAATTTTGGCT
TGGTGACTAAAATTAGGGCCGACTAAAAATTTTGGCCAAATTAAAAGTTT
ATGATTAAGCTTTCCTTAACCAACTTTTTTGAGTACCACATCACGGTCAT
TTATTATTTCGTCCGCTATTATTCATTATATATTAGTCGGCCCTTAGTGA
CTAAATTTCGACGAGGTGAATAAAATTAGGCCCGACTAAAAATTAGGGCC
GACTAAAAATTAGGGTCGACTAAAAATTAGGGTCGACTAAGTTTTGGCCG
GTAAGATACACGCTTTTTTATGATAAACACGAGGCTTAAAATTGGCCAAA
ACCTAAGAACAAATTAAGAACAATCTAAGCCTCGGATTTCAGAAAGTACC
GATTTTAACAGATTTTAAAACTTGTTTTTGAATAAAGAAACTGAACGTAT
TAAGAACATCGTAAGAACATTATGACATACTGTATTGCATTTACTGAATT
ACAAATTTTGAATATTTAGATCTGGCAAGCTTTTTACTTTCTTACCTTAC
AATGAAATAACGAAAAATGTTATATTGATACACTGCGCTGAAAAAAAGTG
GTCACGTCTAGTAAAGGCTAGCTTTTTGTTTGAGATATTGATGTCGAAGC
CAGGGCCCACGCCATGAAATTGAAAGTGGAGGCCAATAAATAACGAGTCT
AAGTAGGCGCAACCAAAAAATTTTACTTCTCAAAAAAGTGGGCCCTGAAA
GCTCAATTGTCTTTTCTCCTTTTTTCTAGAAATTTGAACGGTTCATTCGT
CCAAGCAGATACCTCACCTGATGGGTCACCCTCTCCCAAAAAGTTACACG
AGCACGCGGAAAATATTCGTCGCGCGGTCGAAGAGCATCACAATAAAAGT
ATTGAAGAGGGTGTCACTGAACTACAAAAAACTCCTAGATCGCACACAAG
TTCCAACACTGGATTTAGTGGTAGCGAAATTCCGTTCTATTTAATGGAGT
AGGTACTGATGATCACGTATGGTTTATAGTTCAATAAATCTCAATGGGTT
GTTGCTAAGCAACGGGAGAGCACTTTCATTTGTCATATTTGATATGACTG
AATGCAGAATCAAACATTGGATTGAAAAGGGAATGGTTTCAATCAGTACA
TCGGGATTTCTGTCATTAGCTTCACTGGGAAGAAATCAATTCTCTCATAT
TAACTTATTTATTCATTCGAGGAGGATACCAGAAAGTCTTCTTCCAGAAG
CTTCGGTTATACAACAATGCGCCTAAGGATGCATGAAAGAGGAGTGGAAC
CGAGTTTATAAGGGGCGAATGACGTCAATTTTTAGAATTCAATATAATGA
AGAACTTGCAGGCAGCATGAACATATAAACCAAAGGATGCATAAAAGAGG
ATTGGGTCCGAGTTTATAAGGGTCGAATGACGTCAATTTTTAGAATTCAA
TGTAATGAAGAACTTGCAGGCAATAAAGACATTTCATGCCATTCGACTCT
GGTCAAGTAGATGCCAGTCCTCTGGTTGTGATAGGGTTGGTGTCATACGC
ATCGAATTGCCAAATTCATGATATGCACCACTGCAATGACTTCACGAAAT
TATGCAACCTTCTGTTTTTGTTCCACCCAATACGTCACTTTTTCTATTGG
TTAAGTGACGTATTAGGATTTTCAAAGTTTTCAGAAGACTCTCCAGTGGT
GCATATCATGAATTGGGTGCGAAATTTTCAAAGTTCCCAGAAGACTCTCC
AGTGGTGCATATCATGAATAGTACTACTGAGTAGATTATATTGAATATTG
AGATTTTAGAAACATTTCCATTCAGTTTGTTCGCCTTGTATTTGTAGTAA
TATTTTTTTAAACTGTATTTAGGATAAAAATAAAAATATTTTTTCTCGAA
ATTTATTCTTCCAAATTAATTTGAAATATACCATAAATCCTTGCATATCT
TCAG Coding sequence (CDS) from alignment at sc0000443:261365..266068- >TCONS_00023126 ID=TCONS_00023126|Name=TCONS_00023126|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0000443:261365..266068- (Clytia hemisphaerica)
AAATTTGAACGGTTCATTCGTCCAAGCAGATACCTCACCTGATGGGTCAC
CCTCTCCCAAAAAGTTACACGAGCACGCGGAAAATATTCGTCGCGCGGTC
GAAGAGCATCACAATAAAAGTATTGAAGAGGGTGTCACTGAACTACAAAA
AACTCCTAGATCGCACACAAGTTCCAACACTGGATTTAGTGGTAGCGAAA
TTCCGTTCTATTTAATGGAGTAGGAATCTCAACCAAACATAGTCTTCGTA
TGGCAACGCCCGCTTTCAGCCCTGCACCTTCAACTTTTGCATCATCTAAG
AAGGAGAGATTACCAACTTCAAAACAAATGCCCTCCACCGCAGAACTGTA
CCGTTTCATGTCATTGAATTACGATGGATCTGTGTCAAGGAATCTTGATC
GATGCATTGTATATCAACACCCGTCCTTAACAAAGATAAGAAATTAAACC
CAAGAAGTGGTAAGTTTTATATGCATTGTATACCCACGCCCGTCCTTAAC
AAAGATAAGAAATTAAACCCAAGAAGTGAAATTTGAACGGTTCATTCGTC
CAAGCAGATACCTCACCTGATGGGTCACCCTCTCCCAAAAAGTTACACGA
GCACGCGGAAAATATTCGTCGCGCGGTCGAAGAGCATCACAATAAAAGTA
TTGAAGAGGGTGTCACTGAACTACAAAAAACTCCTAGATCGCACACAAGT
TCCAACACTGGATTTAGTGGTAGCGAAATTCCGTTCTATTTAATGGAGTA
GGAATCTCAACCAAACATAGTCTTCGTATGGCAACGCCCGCTTTCAGCCC
TGCACCTTCAACTTTTGCATCATCTAAGAAGGAGAGATTACCAACTTCAA
AACAAATGCCCTCCACCGCAGAACTGTACCGTTTCATGTCATTGAATTAC
GATGGATCTGTGTCAAGGAATCTTGATCGATGCATTGTATATCAACACCC
GTCCTTAACAAAGATAAGAAATTAAACCCAAGAAGTGGTAAGTTTTATAT
GCATTGTATACCCACGCCCGTCCTTAACAAAGATAAGAAATTAAACCCAA
GAAGTGAAATTTGAACGGTTCATTCGTCCAAGCAGATACCTCACCTGATG
GGTCACCCTCTCCCAAAAAGTTACACGAGCACGCGGAAAATATTCGTCGC
GCGGTCGAAGAGCATCACAATAAAAGTATTGAAGAGGGTGTCACTGAACT
ACAAAAAACTCCTAGATCGCACACAAGTTCCAACACTGGATTTAGTGGTA
GCGAAATTCCGTTCTATTTAATGGAGTAGGAATCTCAACCAAACATAGTC
TTCGTATGGCAACGCCCGCTTTCAGCCCTGCACCTTCAACTTTTGCATCA
TCTAAGAAGGAGAGATTACCAACTTCAAAACAAATGCCCTCCACCGCAGA
ACTGTACCGTTTCATGTCATTGAATTACGATGGATCTGTGTCAAGGAATC
TTGATCGATGCATTGTATATCAACACCCGTCCTTAACAAAGATAAGAAAT
TAAACCCAAGAAGTGGTAAGTTTTATATGCATTGTATACCCACGCCCGTC
CTTAACAAAGATAAGAAATTAAACCCAAGAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023126-exon-sc0000443-1575043694:265942..266068 | TCONS_00023126-exon-sc0000443-1575043694:265942..266068 | Clytia hemisphaerica | exon |
| TCONS_00023126-exon-sc0000443-1575043694:263323..263500 | TCONS_00023126-exon-sc0000443-1575043694:263323..263500 | Clytia hemisphaerica | exon |
| TCONS_00023126-exon-sc0000443-1575043694:261958..262539 | TCONS_00023126-exon-sc0000443-1575043694:261958..262539 | Clytia hemisphaerica | exon |
| TCONS_00023126-exon-sc0000443-1575043694:261365..261849 | TCONS_00023126-exon-sc0000443-1575043694:261365..261849 | Clytia hemisphaerica | exon |
| TCONS_00023126-exon-sc0000443-1510915933:265942..266068 | TCONS_00023126-exon-sc0000443-1510915933:265942..266068 | Clytia hemisphaerica | exon |
| TCONS_00023126-exon-sc0000443-1510915933:263323..263500 | TCONS_00023126-exon-sc0000443-1510915933:263323..263500 | Clytia hemisphaerica | exon |
| TCONS_00023126-exon-sc0000443-1510915933:261958..262539 | TCONS_00023126-exon-sc0000443-1510915933:261958..262539 | Clytia hemisphaerica | exon |
| TCONS_00023126-exon-sc0000443-1510915933:261365..261849 | TCONS_00023126-exon-sc0000443-1510915933:261365..261849 | Clytia hemisphaerica | exon |
| TCONS_00023126-exon-sc0000443-1491911889:265942..266068 | TCONS_00023126-exon-sc0000443-1491911889:265942..266068 | Clytia hemisphaerica | exon |
| TCONS_00023126-exon-sc0000443-1491911889:263323..263500 | TCONS_00023126-exon-sc0000443-1491911889:263323..263500 | Clytia hemisphaerica | exon |
| TCONS_00023126-exon-sc0000443-1491911889:261958..262539 | TCONS_00023126-exon-sc0000443-1491911889:261958..262539 | Clytia hemisphaerica | exon |
| TCONS_00023126-exon-sc0000443-1491911889:261365..261849 | TCONS_00023126-exon-sc0000443-1491911889:261365..261849 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000443 | supercontig | sc0000443:261365..266068 - |
Blast
The following BLAST results are available for this feature:
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