TCONS_00023082 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023082
Unique NameTCONS_00023082
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1908

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023082 ID=TCONS_00023082|Name=TCONS_00023082|organism=Clytia hemisphaerica|type=transcript|length=1908bp
AGCGTACAGGCTAAAATACGGATAAAAAATGTGACTGCGTTGCAAATCGG
CAAATTCAAACAGTTGGCTAAAACGTTGGCGGTCAAATTCGCAAATTCAC
CTTCGAATCGACACTACTCTCAACCTCTTTTCAGgatcaagttaaatctt
caggAAGACACACCCAATACAGTCAAAATGGTTTCAGAAGACAAAATCGA
CATGTCCCTTGATGATATCATTGCATCTAACAAGAAATCGTCCAGAGGAG
GAGGAAGGGGAAGAGGTCGTGGACGTGGTGCTTCACGAGGAGGAAGAGGT
TCTTCTGGTGCTGCCGGTGGGGGCAGACGAGACAGTGCTGGACCTGTCAA
ACGTGGACGTGGAGGATCTAGAAGTGCACCATACAACCGAccAAAAGGTA
TCCCAGATAAATGGGAGCATGACATGTATGATGGAGCTGGAGCGCGAGGT
CGACGCAGCGATAGTGGCATTAGTGGACGTGTTGGAGTTTCAACCGGAGC
ACATCTTCAAATATCAAACTTGGATTTTGGAGTAACTGAAACAGACATCA
AAGAATTGTTCACTGAGTTTGGAAAACTTAAAAAGGCAACAATCAATTAC
GACAGTTCAGGACGATCACATGGTACAGCTGATGTAGTTTTCGAAAGAAG
AGATGATGCTGCAAAAGCCTTCAAGACATACAATGGAGTTCCCTTAGAtg
GTCGACCAATGAAAATCGAACAAGTTACACCACAAGTATCAACAAATTTC
GGGAGACGTGGCACGAGCAATAATTACGGTGGCGGGCGAATGAACACGCG
CCAAGGAGGACGAGGAGCTCGAGGTGGTGATGGTGGTAACCGACGTGGAT
CCACACGTGGTGGAAGCACCCGCGGTGGTGGCCGAGGATCGTCCCGCGGT
GGCAGAGGTGCTCGCGGTGGTGCCCGTGGAGGCAAAGGGCGTGGTCCCCC
ACCCTCTAAAGAAGACTTGGATAAAGAATTAGACAGCTACATTGAAGCTG
CCAATTGAGGAGTGAAAGAAGAAAAGTAATTGGGATGGTTTTTGTACATA
TTCATTTTCATACGTGATTTTCATTTTGCCATACTTTACTCACAAAACAA
CGTGAAAAACGTTCTGTTGTTGTAATCCGCCTGAAGAAGTCCTCCTACAC
AGGACAGAGCGTGACGAATCTGTTTTTTTATGATATAAGCAAATGAAGTT
CTGAGAGAATTTGTAAATAAGAAGAGGTGTACAGAGATGTTGCTGACAAC
TTTAAATGAAtcgaaattgttttattttataacgGAATGGTTGATGTCGA
GATTTTATAACAACCTTTTTAAAAGTGCAATTTATTCTTACCAGACAAAG
TTCATACATACATAGTgaagatctttatttttcatgcTCTAGGATAATTC
TTTGATGCTGAGAACAATGGTATGAATTATTGGAGTGCGAGTTTTTCTCG
TGGCGCTCTATAAAAAAAGTCGCATTCTACCCAGATGCATGATATAAAAA
ATCATTGTATTTTCTATAAGGATAATTTTATTTGGTATTTAACAGAGATT
ACACGTGTCTATTTGTTAANACCCAGATGCATGATATAAAAAATCATTGT
ATTTTCTATAAGGATAATTTTATTTGGTATTTAACAGAGATTACACGTGT
CTATTTGTTAACATGTAATTTCGTTTGCTTTGATCTTGAACTTTGTAATG
AGTTTTCACGATGATGTTGTCATTATTTTATCCTATATTTCTTTTATGGT
TTTATTACGAAAgagaaattatcatttttattactaACCCGTTTTTGTCA
ATGTTCTTGCGTGTTTTTCCGCTGTGTAACAATGTCTTCTAGTCATATGA
ACTTCAATGGAAATGGGCCATTTCATGTAATAGCCACATTTCCGAGCGGT
TCCAGGGC
Run BLAST on NCBI

protein sequence of TCONS_00023082-protein

>TCONS_00023082-protein ID=TCONS_00023082-protein|Name=TCONS_00023082-protein|organism=Clytia hemisphaerica|type=polypeptide|length=335bp
SVQAKIRIKNVTALQIGKFKQLAKTLAVKFANSPSNRHYSQPLFRIKLNL
QEDTPNTVKMVSEDKIDMSLDDIIASNKKSSRGGGRGRGRGRGASRGGRG
SSGAAGGGRRDSAGPVKRGRGGSRSAPYNRPKGIPDKWEHDMYDGAGARG
RRSDSGISGRVGVSTGAHLQISNLDFGVTETDIKELFTEFGKLKKATINY
DSSGRSHGTADVVFERRDDAAKAFKTYNGVPLDGRPMKIEQVTPQVSTNF
GRRGTSNNYGGGRMNTRQGGRGARGGDGGNRRGSTRGGSTRGGGRGSSRG
GRGARGGARGGKGRGPPPSKEDLDKELDSYIEAAN
Run BLAST on NCBI

transcript from alignment at sc0000441:259303..265011+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023082 ID=TCONS_00023082|Name=TCONS_00023082|organism=Clytia hemisphaerica|type=transcript|length=5709bp|location=Sequence derived from alignment at sc0000441:259303..265011+ (Clytia hemisphaerica)
AGCGTACAGGCTAAAATACGGATAAAAAATGTGACTGCGTTGCAAATCGG
CAAATTCAAACAGTTGGCTAAAACGTTGGCGGTCAAATTCGCAAATTCAC
CTTCGAATCGACACTACTCTCAACCTCTTTTCAGgatcaagttaaatctt
caggAAGACACACCCAATACAGTCAAAATGGTTTCAGAAGACAAAATCGA
CATGTCCCTTGATGATATCATTGCATCTAACAAGAAATCGTCCAGAGGAG
GAGGAAGGGGAAGAGGTCGTGGACGTGGTGCTTCACGAGGAGGAAGAGGT
TCTTCTGGTGCTGCCGGTGGGGGCAGACGAGACAGTGCTGGACCTGTCAA
ACGTGGACGTGGAGGATCTAGAAGTGCACCATACAACCGAGTAAGGCTCC
CATCTACCAAAGTTATCAAATAAAGTTGAGTTTCAAGtgaaaatattcat
tttcaACGAGTTCGTCATCAGAGAAGTGAATGAAACCTGGAGATGAATTA
TTATCTAGCATCAAGGAGATGATTCAACTTGTTGTTTCTTCCCAACATGT
CATTACATTATATCAATTCATTCACACCACCCATGAAAAGCATTTTATTA
ATGCTGAGAAAGGTGTCACAATAAAATTATATTAGAAAATTGCATATGAG
AATAAATCTCTCCATTATCTGAAAATTTGACCAGCATCTTTTGATTTGCA
AAGGATGAAATGGTTACAGATGTGGTGATTTTAGAgaacttttgaatgaa
aatttattttagccAAAAGGTATCCCAGATAAATGGGAGCATGACATGTA
TGATGGAGCTGGAGCGCGAGGTCGACGCAGCGATAGTGGCATTAGTGGAC
GTGTTGGAGTTTCAACCGGAGCACATCTTCAAATATCAAACTTGGATTTT
GGAGTAACTGAAACAGACATCAAAGTATGGTTATATGCTTCTTTtgcaaa
tgttttcattttgaaataggTTTTTGGAATGGggttgaaataaatttttc
aaacttagGGTTTTTAAGACCAGACAGTGAAGTGAAGTCCAAAATGGGAC
CCTTTTTATTGATTCCAATCCAGAATTGATGAATTTGTCAAAATTAGCTC
CCTTGAGATAGCAATTTTGAAAAAGCAGTCTGTAAGCTGCTTGTTTTCAA
GACCTAGGGTTCCCAGATAAGTGGCAAGCTTGTTTTCATAGTTAAATTTG
AACTTCTTTCAGGAATTGTTCACTGAGTTTGGAAAACTTAAAAAGGCAAC
AATCAATTACGACAGTTCAGGACGATCACATGGTACAGCTGATGTAGTTT
TCGAAAGAAGAGATGATGCTGCAAAAGCCTTCAAGACATACAATGGAGTT
CCCTTAGAtggtaagaacattttttaatcaTACAGAAAGTAAGGCCAAGT
GATCAATTGTTTAAGAAACCTAAACCTTTGGGATAATTATTCTTTCTGTA
CAATTTGCATAGGTTTGCTGATaattgaaaaacattgtttcaaacTAAAT
GTTGCAAACTCCTAATCATGggggttttcactttttcaGTCATGTACCAA
AAGTCATGTTAAGTCTTATAATTTTTTGCATACTCTTAACCCGACTTTTG
AAAGTGGTATTATAGTTACACCTATGCAAGGCCTGGGGTCGTGAGGGgtt
ggtactaaaatctcagaccaGAATATTTTCTATTAAGCACGTTTCCTTAC
CACTGGTAAGCAAGTTCTGAAAAATTGAGTTTCAAATGGTATTAAATTTT
CCTGCCATAGTTGGAggatgaagaaaatttttgcctTTTAGGGGCCACTC
AAAAAGTACATACACTTGAGAGGGGGAGGGGGTAATCCCAAAAGCGTATG
AAAGCGTACAAGGAGAgggggtccttgaggagaagtacgtatgcttgtaa
tttttcctaaactgtcttatagattcttttaatttcttgagactttgtta
taaatacgattggatacctacatattggttagggggtgtactaaaaagcg
taTGTATTCTGAAGGGGGTGCACATAAAGTGTACAAAGGGGAGGATgagt
caaaaatttgccattttcgagcataagtactttttgaatggtcccttaAA
CATAAAGTTTTTTAAGATGTTTTGAAATAGCCCAAAAGTTCtaacttttt
cttgaaaaaactaTCTTGATACTGTTAGACTTATTGCAATATATTGAGTT
GATTTTCCTTCAAGTTTTTGTACAGTCATTTTTACTTACTTTGCATTATT
CACTTTCATTTactttcataattttttcttttggaaaaaagtgcttgaaa
aagTAAACAGAGGGTTTGGAAATTATACTATGACTCTAGACTTGAAGACT
CTTTAGATCAAACCTGACaactgaaaatatataaaaactaATTAACAGGG
GTCCTAATAAAGTCTGGGgttcaaaaataattgaaaaataaacaagcagA
CAGGCACCTGTGAGTAAAACGTTTACTAAAAgggttttcaagaatttttc
gcatATCTTCACCCTTTTTAGAGAAGCTTggtattttgtattttgtctTC
TCAGAACTAAGCTTCTCCCTCCTCCATTTCTGCTCCCAATAAATATTAGG
AATTTTAACAATTAATGTTGAAATAGACATAACCCTTTACTCTCCTTGTT
ACCAATTTTCCCAAAATACTGAGAGTAAAATAGATTACTTTCTGAATTGG
CAAACTCAAAGGTCAAAATTACAATTTCAAGTGGGTTAGACAAAATGTCA
GATCAgagttgctttagcttgaacgTTATGATTTCTGGGTCGGACAAAAA
GCTTTCTAGGTCGCACAATAACCGATGTCAGACCATTATTTCAAGCCCCC
TATTTCACCAAAACATGTGGTGAGAAATATATATTTGACCATTATTGGTG
GCCCCGGTGTGACTTCTTTTNAGACCATTATTTCAAGCCCCCTATTTCAC
CAAAACATGTGGTGAGAAATATATATTTGACCATTATTGGTGGCCCCGGT
GTGACTTCTTTTTGTGGGGTcgaaataaaagtgaaatttagGACTTCAAA
TATGGGTCAAAGATTTTCTTCCCCAAGCACTGCCaagcatttaaaaaata
acacaaatctgaaaaatttatatttcaagAAAGCTTTAAGAGCTCAAATA
TCATCAGCAATTAAAAAATCATTGGATCGCTTAAGTTTTTTAAGATcgct
ttttcattttgaaacagCACCTTCTAGGGaacaaaaacatttgaaaaaag
tctGAATTTGGTTAGAGATTTAGTTTTAAGCACAAAAAGTNAGCGCCTTC
TAGGGaacaaaaacatttgaaaaaagtctGAATTTGGTTAGAGATTTAGT
TTTAAGCACAAAAAGCATTATCAAAGCTCTGAAAAGCGATTAGTGCGGGG
AACAGAGGCATAGTATGGATTTATTCATAATATGGAAAATATGGAAATTA
TGAATAATTAAGATTTTCAAtatcatttatttttgctgTTTAGGTCGACC
AATGAAAATCGAACAAGTTACACCACAAGTATCAACAAATTTCGGGAGgt
atgtacatgttttttatcaTGAGAACAAATCGTACaagaacacaaggctt
tgatggcaaaaatattaagaacaagttttttTAACCTTATGAAGCTTTAC
GGACAcccaattttttagaaaaatgaacaaaaatactccgaaaatagtga
aaaagtttaaaacatccaaaggcttcaaaaacttggatgttcttatataa
aagaatTTGTATGTATCAAGATATTGCTTGTGTACGAGAAATGTTTTTGT
AACAGTATAATCGTTAGAATTACGTTTGTCATTCTGTTGATGACTTCATC
TTCCAATAATTAGTCTAATTATGGAGTCAGGAAATGCATCATTATAGGAA
TGTTTTCTGTTGTGCGTTTGCATTTGAGGGATTTCCTTTGGTTTTTGAAG
GTTGTTGTAAAATCATGCTGTAATTCTTCCGTTTTAATATATTGCTATCA
TATCTTCAAAAAGAGAAACAATAAATTTTTACATATATATTCTTATATAA
GTTCGCTATAAATCAAAGCCCTATAAACAAAAAAACCTCATGGCACAAGT
CGGCCATAAAGTCAATGAGGAATGTTTTTTTTAGAAAGTTGATAGAATGT
CTTCAGGGGCATGCCGAAATATAATAAAATGACAAAGAGAAGCTATAAAA
GTTTTAGAATGTTCAATGGCAATAATTGCTCTGCAAGCTGCACaattttt
tttttcaaaagaaatctaaaTATTCAATGATAGGACGGAGGCAATATAAT
TTTTTGTCGCTTCAACTATTTGAGAATCGGTTTAAATCAAATGTTCTTGC
ATTTTAGACGTGGCACGAGCAATAATTACGGTGGCGGGCGAATGAACACG
CGCCAAGGAGGACGAGGAGCTCGAGGTGGTGATGGTGGTAACCGACGTGG
ATCCACACGTGGTGGAAGCACCCGCGGTGGTGGCCGAGGATCGTCCCGCG
GTGGCAGAGGTGCTCGCGGTGGTGCCCGTGGAGGCAAAGGGCGTGGTCCC
CCACCCTCTAAAGAAGACTTGGATAAAGAATTAGACAGCTACATTGAAGC
TGTAAGTATAAAGTTTAACCCCCATTCATGAGATAAGGTTACGCAATTTG
GTATGGCGTCAATATTATATAAAAGCAAATGTTTACGGGTTGTTTGGCCT
CATAGATTTCTAGAACTTGTTCAGTGTACTTGTTTACTGTAATCTTTagg
taaaattttgaattgaaagatAAAAACGTTTTTATCCTTCTTTTTTCCAG
GCCAATTGAGGAGTGAAAGAAGAAAAGTAATTGGGATGGTTTTTGTACAT
ATTCATTTTCATACGTGATTTTCATTTTGCCATACTTTACTCACAAAACA
ACGTGAAAAACGTTCTGTTGTTGTAATCCGCCTGAAGAAGTCCTCCTACA
CAGGACAGAGCGTGACGAATCTGTTTTTTTATGATATAAGCAAATGAAGT
TCTGAGAGAATTTGTAAATAAGAAGAGGTGTACAGAGATGTTGCTGACAA
CTTTAAATGAAtcgaaattgttttattttataacgGAATGGTTGATGTCG
AGATTTTATAACAACCTTTTTAAAAGTGCAATTTATTCTTACCAGACAAA
GTTCATACATACATAGTgaagatctttatttttcatgcTCTAGGATAATT
CTTTGATGCTGAGAACAATGGTATGAATTATTGGAGTGCGAGTTTTTCTC
GTGGCGCTCTATAAAAAAAGTCGCATTCTACCCAGATGCATGATATAAAA
AATCATTGTATTTTCTATAAGGATAATTTTATTTGGTATTTAACAGAGAT
TACACGTGTCTATTTGTTAANACCCAGATGCATGATATAAAAAATCATTG
TATTTTCTATAAGGATAATTTTATTTGGTATTTAACAGAGATTACACGTG
TCTATTTGTTAACATGTAATTTCGTTTGCTTTGATCTTGAACTTTGTAAT
GAGTTTTCACGATGATGTTGTCATTATTTTATCCTATATTTCTTTTATGG
TTTTATTACGAAAgagaaattatcatttttattactaACCCGTTTTTGTC
AATGTTCTTGCGTGTTTTTCCGCTGTGTAACAATGTCTTCTAGTCATATG
AACTTCAATGGAAATGGGCCATTTCATGTAATAGCCACATTTCCGAGCGG
TTCCAGGGC

Coding sequence (CDS) from alignment at sc0000441:259303..265011+

>TCONS_00023082 ID=TCONS_00023082|Name=TCONS_00023082|organism=Clytia hemisphaerica|type=CDS|length=6048bp|location=Sequence derived from alignment at sc0000441:259303..265011+ (Clytia hemisphaerica)
AGCGTACAGGCTAAAATACGGATAAAAAATGTGACTGCGTTGCAAATCGG
CAAATTCAAACAGTTGGCTAAAACGTTGGCGGTCAAATTCGCAAATTCAC
CTTCGAATCGACACTACTCTCAACCTCTTTTCAGgatcaagttaaatctt
caggAAGACACACCCAATACAGTCAAAATGGTTTCAGAAGACAAAATCGA
CATGTCCCTTGATGATATCATTGCATCTAACAAGAAATCGTCCAGAGGAG
GAGGAAGGGGAAGAGGTCGTGGACGTGGTGCTTCACGAGGAGGAAGAGGT
TCTTCTGGTGCTGCCGGTGGGGGCAGACGAGACAGTGCTGGACCTGTCAA
ACGTGGACGTGGAGGATCTAGAAGTGCACCATACAACCGAccAAAAGGTA
TCCCAGATAAATGGGAGCATGACATGTATGATGGAGCTGGAGCGCGAGGT
CGACGCAGCGATAGTGGCATTAGTGGACGTGTTGGAGTTTCAACCGGAGC
ACATCTTCAAATATCAAACTTGGATTTTGGAGTAACTGAAACAGACATCA
AAGAATTGTTCACTGAGTTTGGAAAACTTAAAAAGGCAACAATCAATTAC
GACAGTTCAGGACGATCACATGGTACAGCTGATGTAGTTTTCGAAAGAAG
AGATGATGCTGCAAAAGCCTTCAAGACATACAATGGAGTTCCCTTAGAtg
GTCGACCAATGAAAATCGAACAAGTTACACCACAAGTATCAACAAATTTC
GGGAGACGTGGCACGAGCAATAATTACGGTGGCGGGCGAATGAACACGCG
CCAAGGAGGACGAGGAGCTCGAGGTGGTGATGGTGGTAACCGACGTGGAT
CCACACGTGGTGGAAGCACCCGCGGTGGTGGCCGAGGATCGTCCCGCGGT
GGCAGAGGTGCTCGCGGTGGTGCCCGTGGAGGCAAAGGGCGTGGTCCCCC
ACCCTCTAAAGAAGACTTGGATAAAGAATTAGACAGCTACATTGAAGCTG
CCAATTGAAGCGTACAGGCTAAAATACGGATAAAAAATGTGACTGCGTTG
CAAATCGGCAAATTCAAACAGTTGGCTAAAACGTTGGCGGTCAAATTCGC
AAATTCACCTTCGAATCGACACTACTCTCAACCTCTTTTCAGgatcaagt
taaatcttcaggAAGACACACCCAATACAGTCAAAATGGTTTCAGAAGAC
AAAATCGACATGTCCCTTGATGATATCATTGCATCTAACAAGAAATCGTC
CAGAGGAGGAGGAAGGGGAAGAGGTCGTGGACGTGGTGCTTCACGAGGAG
GAAGAGGTTCTTCTGGTGCTGCCGGTGGGGGCAGACGAGACAGTGCTGGA
CCTGTCAAACGTGGACGTGGAGGATCTAGAAGTGCACCATACAACCGAcc
AAAAGGTATCCCAGATAAATGGGAGCATGACATGTATGATGGAGCTGGAG
CGCGAGGTCGACGCAGCGATAGTGGCATTAGTGGACGTGTTGGAGTTTCA
ACCGGAGCACATCTTCAAATATCAAACTTGGATTTTGGAGTAACTGAAAC
AGACATCAAAGAATTGTTCACTGAGTTTGGAAAACTTAAAAAGGCAACAA
TCAATTACGACAGTTCAGGACGATCACATGGTACAGCTGATGTAGTTTTC
GAAAGAAGAGATGATGCTGCAAAAGCCTTCAAGACATACAATGGAGTTCC
CTTAGAtgGTCGACCAATGAAAATCGAACAAGTTACACCACAAGTATCAA
CAAATTTCGGGAGACGTGGCACGAGCAATAATTACGGTGGCGGGCGAATG
AACACGCGCCAAGGAGGACGAGGAGCTCGAGGTGGTGATGGTGGTAACCG
ACGTGGATCCACACGTGGTGGAAGCACCCGCGGTGGTGGCCGAGGATCGT
CCCGCGGTGGCAGAGGTGCTCGCGGTGGTGCCCGTGGAGGCAAAGGGCGT
GGTCCCCCACCCTCTAAAGAAGACTTGGATAAAGAATTAGACAGCTACAT
TGAAGCTGCCAATTGAAGCGTACAGGCTAAAATACGGATAAAAAATGTGA
CTGCGTTGCAAATCGGCAAATTCAAACAGTTGGCTAAAACGTTGGCGGTC
AAATTCGCAAATTCACCTTCGAATCGACACTACTCTCAACCTCTTTTCAG
gatcaagttaaatcttcaggAAGACACACCCAATACAGTCAAAATGGTTT
CAGAAGACAAAATCGACATGTCCCTTGATGATATCATTGCATCTAACAAG
AAATCGTCCAGAGGAGGAGGAAGGGGAAGAGGTCGTGGACGTGGTGCTTC
ACGAGGAGGAAGAGGTTCTTCTGGTGCTGCCGGTGGGGGCAGACGAGACA
GTGCTGGACCTGTCAAACGTGGACGTGGAGGATCTAGAAGTGCACCATAC
AACCGAccAAAAGGTATCCCAGATAAATGGGAGCATGACATGTATGATGG
AGCTGGAGCGCGAGGTCGACGCAGCGATAGTGGCATTAGTGGACGTGTTG
GAGTTTCAACCGGAGCACATCTTCAAATATCAAACTTGGATTTTGGAGTA
ACTGAAACAGACATCAAAGAATTGTTCACTGAGTTTGGAAAACTTAAAAA
GGCAACAATCAATTACGACAGTTCAGGACGATCACATGGTACAGCTGATG
TAGTTTTCGAAAGAAGAGATGATGCTGCAAAAGCCTTCAAGACATACAAT
GGAGTTCCCTTAGAtgGTCGACCAATGAAAATCGAACAAGTTACACCACA
AGTATCAACAAATTTCGGGAGACGTGGCACGAGCAATAATTACGGTGGCG
GGCGAATGAACACGCGCCAAGGAGGACGAGGAGCTCGAGGTGGTGATGGT
GGTAACCGACGTGGATCCACACGTGGTGGAAGCACCCGCGGTGGTGGCCG
AGGATCGTCCCGCGGTGGCAGAGGTGCTCGCGGTGGTGCCCGTGGAGGCA
AAGGGCGTGGTCCCCCACCCTCTAAAGAAGACTTGGATAAAGAATTAGAC
AGCTACATTGAAGCTGCCAATTGAAGCGTACAGGCTAAAATACGGATAAA
AAATGTGACTGCGTTGCAAATCGGCAAATTCAAACAGTTGGCTAAAACGT
TGGCGGTCAAATTCGCAAATTCACCTTCGAATCGACACTACTCTCAACCT
CTTTTCAGgatcaagttaaatcttcaggAAGACACACCCAATACAGTCAA
AATGGTTTCAGAAGACAAAATCGACATGTCCCTTGATGATATCATTGCAT
CTAACAAGAAATCGTCCAGAGGAGGAGGAAGGGGAAGAGGTCGTGGACGT
GGTGCTTCACGAGGAGGAAGAGGTTCTTCTGGTGCTGCCGGTGGGGGCAG
ACGAGACAGTGCTGGACCTGTCAAACGTGGACGTGGAGGATCTAGAAGTG
CACCATACAACCGAccAAAAGGTATCCCAGATAAATGGGAGCATGACATG
TATGATGGAGCTGGAGCGCGAGGTCGACGCAGCGATAGTGGCATTAGTGG
ACGTGTTGGAGTTTCAACCGGAGCACATCTTCAAATATCAAACTTGGATT
TTGGAGTAACTGAAACAGACATCAAAGAATTGTTCACTGAGTTTGGAAAA
CTTAAAAAGGCAACAATCAATTACGACAGTTCAGGACGATCACATGGTAC
AGCTGATGTAGTTTTCGAAAGAAGAGATGATGCTGCAAAAGCCTTCAAGA
CATACAATGGAGTTCCCTTAGAtgGTCGACCAATGAAAATCGAACAAGTT
ACACCACAAGTATCAACAAATTTCGGGAGACGTGGCACGAGCAATAATTA
CGGTGGCGGGCGAATGAACACGCGCCAAGGAGGACGAGGAGCTCGAGGTG
GTGATGGTGGTAACCGACGTGGATCCACACGTGGTGGAAGCACCCGCGGT
GGTGGCCGAGGATCGTCCCGCGGTGGCAGAGGTGCTCGCGGTGGTGCCCG
TGGAGGCAAAGGGCGTGGTCCCCCACCCTCTAAAGAAGACTTGGATAAAG
AATTAGACAGCTACATTGAAGCTGCCAATTGAAGCGTACAGGCTAAAATA
CGGATAAAAAATGTGACTGCGTTGCAAATCGGCAAATTCAAACAGTTGGC
TAAAACGTTGGCGGTCAAATTCGCAAATTCACCTTCGAATCGACACTACT
CTCAACCTCTTTTCAGgatcaagttaaatcttcaggAAGACACACCCAAT
ACAGTCAAAATGGTTTCAGAAGACAAAATCGACATGTCCCTTGATGATAT
CATTGCATCTAACAAGAAATCGTCCAGAGGAGGAGGAAGGGGAAGAGGTC
GTGGACGTGGTGCTTCACGAGGAGGAAGAGGTTCTTCTGGTGCTGCCGGT
GGGGGCAGACGAGACAGTGCTGGACCTGTCAAACGTGGACGTGGAGGATC
TAGAAGTGCACCATACAACCGAccAAAAGGTATCCCAGATAAATGGGAGC
ATGACATGTATGATGGAGCTGGAGCGCGAGGTCGACGCAGCGATAGTGGC
ATTAGTGGACGTGTTGGAGTTTCAACCGGAGCACATCTTCAAATATCAAA
CTTGGATTTTGGAGTAACTGAAACAGACATCAAAGAATTGTTCACTGAGT
TTGGAAAACTTAAAAAGGCAACAATCAATTACGACAGTTCAGGACGATCA
CATGGTACAGCTGATGTAGTTTTCGAAAGAAGAGATGATGCTGCAAAAGC
CTTCAAGACATACAATGGAGTTCCCTTAGAtgGTCGACCAATGAAAATCG
AACAAGTTACACCACAAGTATCAACAAATTTCGGGAGACGTGGCACGAGC
AATAATTACGGTGGCGGGCGAATGAACACGCGCCAAGGAGGACGAGGAGC
TCGAGGTGGTGATGGTGGTAACCGACGTGGATCCACACGTGGTGGAAGCA
CCCGCGGTGGTGGCCGAGGATCGTCCCGCGGTGGCAGAGGTGCTCGCGGT
GGTGCCCGTGGAGGCAAAGGGCGTGGTCCCCCACCCTCTAAAGAAGACTT
GGATAAAGAATTAGACAGCTACATTGAAGCTGCCAATTGAAGCGTACAGG
CTAAAATACGGATAAAAAATGTGACTGCGTTGCAAATCGGCAAATTCAAA
CAGTTGGCTAAAACGTTGGCGGTCAAATTCGCAAATTCACCTTCGAATCG
ACACTACTCTCAACCTCTTTTCAGgatcaagttaaatcttcaggAAGACA
CACCCAATACAGTCAAAATGGTTTCAGAAGACAAAATCGACATGTCCCTT
GATGATATCATTGCATCTAACAAGAAATCGTCCAGAGGAGGAGGAAGGGG
AAGAGGTCGTGGACGTGGTGCTTCACGAGGAGGAAGAGGTTCTTCTGGTG
CTGCCGGTGGGGGCAGACGAGACAGTGCTGGACCTGTCAAACGTGGACGT
GGAGGATCTAGAAGTGCACCATACAACCGAccAAAAGGTATCCCAGATAA
ATGGGAGCATGACATGTATGATGGAGCTGGAGCGCGAGGTCGACGCAGCG
ATAGTGGCATTAGTGGACGTGTTGGAGTTTCAACCGGAGCACATCTTCAA
ATATCAAACTTGGATTTTGGAGTAACTGAAACAGACATCAAAGAATTGTT
CACTGAGTTTGGAAAACTTAAAAAGGCAACAATCAATTACGACAGTTCAG
GACGATCACATGGTACAGCTGATGTAGTTTTCGAAAGAAGAGATGATGCT
GCAAAAGCCTTCAAGACATACAATGGAGTTCCCTTAGAtgGTCGACCAAT
GAAAATCGAACAAGTTACACCACAAGTATCAACAAATTTCGGGAGACGTG
GCACGAGCAATAATTACGGTGGCGGGCGAATGAACACGCGCCAAGGAGGA
CGAGGAGCTCGAGGTGGTGATGGTGGTAACCGACGTGGATCCACACGTGG
TGGAAGCACCCGCGGTGGTGGCCGAGGATCGTCCCGCGGTGGCAGAGGTG
CTCGCGGTGGTGCCCGTGGAGGCAAAGGGCGTGGTCCCCCACCCTCTAAA
GAAGACTTGGATAAAGAATTAGACAGCTACATTGAAGCTGCCAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012969XLOC_012969Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023082-proteinTCONS_00023082-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023082-exon-sc0000441-1491911889:259303..259692TCONS_00023082-exon-sc0000441-1491911889:259303..259692Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1510915933:259303..259692TCONS_00023082-exon-sc0000441-1510915933:259303..259692Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1575043694:259303..259692TCONS_00023082-exon-sc0000441-1575043694:259303..259692Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1491911889:260065..260226TCONS_00023082-exon-sc0000441-1491911889:260065..260226Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1510915933:260065..260226TCONS_00023082-exon-sc0000441-1510915933:260065..260226Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1575043694:260065..260226TCONS_00023082-exon-sc0000441-1575043694:260065..260226Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1491911889:260515..260662TCONS_00023082-exon-sc0000441-1491911889:260515..260662Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1510915933:260515..260662TCONS_00023082-exon-sc0000441-1510915933:260515..260662Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1575043694:260515..260662TCONS_00023082-exon-sc0000441-1575043694:260515..260662Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1491911889:262796..262850TCONS_00023082-exon-sc0000441-1491911889:262796..262850Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1510915933:262796..262850TCONS_00023082-exon-sc0000441-1510915933:262796..262850Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1575043694:262796..262850TCONS_00023082-exon-sc0000441-1575043694:262796..262850Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1491911889:263660..263903TCONS_00023082-exon-sc0000441-1491911889:263660..263903Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1510915933:263660..263903TCONS_00023082-exon-sc0000441-1510915933:263660..263903Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1575043694:263660..263903TCONS_00023082-exon-sc0000441-1575043694:263660..263903Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1491911889:264103..265011TCONS_00023082-exon-sc0000441-1491911889:264103..265011Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1510915933:264103..265011TCONS_00023082-exon-sc0000441-1510915933:264103..265011Clytia hemisphaericaexon
TCONS_00023082-exon-sc0000441-1575043694:264103..265011TCONS_00023082-exon-sc0000441-1575043694:264103..265011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000441supercontigsc0000441:259303..265011 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
69.0135	61.3531	60.6683	61.5057	1243.43	938.827	326.991	343.825	188.81	191.609	236.437	234.945	220.161	210.135	212.778	248.27	272.506	246.18	80.7547	100.671	193.738	198.116	180.501	162.557	201.53	222.66	150.723	144.263	145.713	148.175
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR025715FoP_C
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
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BLAST of TCONS_00023082 vs. Swiss-Prot (Human)
Match: THOC4 (THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3)

HSP 1 Score: 138.272 bits (347), Expect = 1.893e-36
Identity = 75/136 (55.15%), Postives = 90/136 (66.18%), Query Frame = 1 
Query:  376 APYNRPKGIPDKWEHDMYXXXXXXXXXXXXXXXXXXXXXTGAHLQISNLDFGVTETDIKELFTEFGKLKKATINYDSSGRSHGTADVVFERRDDAAKAFKTYNGVPLDGRPMKIEQVTPQVSTNFGRRGTSNNYGG 783
            APY+RPK +PDKW+HD++D     G   +          TG  L +SNLDFGV++ DI+ELF EFG LKKA ++YD SGRS GTADV FER+ DA KA K YNGVPLDGRPM I+ VT Q+     R   S N GG
Sbjct:   75 APYSRPKQLPDKWQHDLFDSGFGGGAGVE----------TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ-RRPAQSVNRGG 199
The following BLAST results are available for this feature:
BLAST of TCONS_00023082 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
THOC41.893e-3655.15THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE... [more]
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