|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022872 ID=TCONS_00022872|Name=TCONS_00022872|organism=Clytia hemisphaerica|type=transcript|length=4009bpRun BLAST on NCBI protein sequence of TCONS_00022872-protein >TCONS_00022872-protein ID=TCONS_00022872-protein|Name=TCONS_00022872-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp CFLESTSYPITSVNTIYADAKFTGRYCNALALPNPDCGENITVNAIILDTRun BLAST on NCBI transcript from alignment at sc0000435:160883..186247- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022872 ID=TCONS_00022872|Name=TCONS_00022872|organism=Clytia hemisphaerica|type=transcript|length=25365bp|location=Sequence derived from alignment at sc0000435:160883..186247- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000435:160883..186247- >TCONS_00022872 ID=TCONS_00022872|Name=TCONS_00022872|organism=Clytia hemisphaerica|type=CDS|length=44496bp|location=Sequence derived from alignment at sc0000435:160883..186247- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022872 vs. Swiss-Prot (Human)
Match: EPHA7 (Ephrin type-A receptor 7 OS=Homo sapiens GN=EPHA7 PE=1 SV=3) HSP 1 Score: 503.442 bits (1295), Expect = 2.217e-157 Identity = 324/916 (35.37%), Postives = 479/916 (52.29%), Query Frame = 3
Query: 48 IYADAKFTGRYCNALALPNPDCGENITVNAIILDTFPNTKTHNTPTEQEVNLPVMDDLKVPIPQKDGKPSFF-----EAKQTITYDNK----LNKKYIRYLFDSKMGCGSISGFEIYYYKCPSATSSLAVFGVNNAPSLSDDAKEYEGKCVDNAVEVGNEKLTMKCAWNGTVQSITGQCVCLKGYEKENNQCKICDSQHFKPTQGNEKCTRCGLNSRSSIDKTT-CNCLHKYKREVIEINNPLAVCYKIPDVPSAISFSNITRNSVEITWSHPSQINKTN--IYIVDCNDCP------------SGVFPKTT--TDKFITINGLGAFADYEISVTFSSEVSRMIGENQTSKFESFKTLPGPPGKVRNLRQKSLDGGKVELSWDPPFAKGGNLITYLLTY--------GGSTKKTTLTTYIIESDAEDQTFTVKIAAQVSVGG-------QLLTGESSTFKDKISVKGGVALDMXXXXXXXXXXXXXXXXXXXF-YIYRKKHPPYAQAVRLENGQVELKTRFLSFPGSKLYVDPMTYGAVDEAVQEFAFELDQKSLTIGQLLGGGEFADVYKGTLFKNGKSK-EVAIKTLKQSATKHDRDDFLSEAAIVGQFTDPNVISLEGVVLKERPNVIVLEYMANGSLDKYLQKHDMQLTNLQLLGMARGVASGMKYLNELGFIHRDLAARNILVDEYRVCKVSDFGMSREIKVD--ETYDTQGGKIPVRWTAPESIQYKKFTTASDAWSYGILLWEIMSYGERPYWDWGNYEVLERLNQGYRLPPPMNCPKVIHDLMLHCWKKDRTKRPRMVEIRDQIEKWIRSPDLLEX-----XXXXXXXXDENL-DYTVLQTINKWLDAIGMAKYTENFIEKGYATPRQILSLTLEDLEELGIAPIGHRKKIFKAIQNTKQQVEQRHNS 2642
I+ + KFT R CN+L C E + + T+ + + ++L V I SF E K + + + L+KK F C ++ ++YY KC S +LA+F S E G CV +A E M C+ G G+C+C GY+++ + C+ C +K + + +C+RC +S S + ++ C C Y R + P C + P P + F NI + +V + WS P+ N Y + C C G P+ T D ++T+ L A A+Y V + VS + + S T P +V + ++ + VELSW P G + Y + Y ST KT T+ I + + +I A + G + T E +T K + + I + V V II+ + F +I ++H Y++A + G EL F FPG+K Y+DP TY + AV +FA ELD + I +++G GEF +V G L GK VAIKTLK T+ R DFL EA+I+GQF PNV+ LEGVV + +P +IV+E+M NG+LD +L+KHD Q T +QL+GM RG+A+GM+YL ++G++HRDLAARNILV+ VCKVSDFG+SR I+ D Y T GGKIPVRWTAPE+IQY+KFT+ASD WSYGI++WE+MSYGERPYWD N +V++ + +GYRLP PM+CP +H LML CW+K+R +RP+ +I ++K IR+P+ L+T + + D+N D+T ++ +WL AI M +Y +NF GY + + +T+ED+ LGI +GH+KKI +IQ + Q+ H +
Sbjct: 98 IFVELKFTLRDCNSLPGVLGTCKETFNL-------------YYYETDYDTGRNIRENLYVKIDTIAADESFTQGDLGERKMKLNTEVREIGPLSKKGFYLAFQDVGACIALVSVKVYYKKCWSIIENLAIFPDTVTGSEFSSLVEVRGTCVSSAEEEAENAPRMHCSAEGEWLVPIGKCICKAGYQQKGDTCEPCGRGFYKSSSQDLQCSRCPTHSFSDKEGSSRCECEDGYYRA--PSDPPYVACTRPPSAPQNLIF-NINQTTVSLEWSPPADNGGRNDVTYRILCKRCSWEQGECVPCGSNIGYMPQQTGLEDNYVTVMDLLAHANYTFEVEAVNGVSDLSRSQRLFAAVSITTGQAAPSQVSGVMKERVLQRSVELSWQEPEHPNGVITEYEIKYYEKDQRERTYSTVKTKSTSASINNLKPGTVYVFQIRAFTAAGYGNYSPRLDVATLEEATGKMFEATAVSSEQNPVIIIAVVAVAGTIILVFMVFGFIIGRRHCGYSKAD--QEGDEELYFHF-KFPGTKTYIDPETYEDPNRAVHQFAKELDASCIKIERVIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVHRDLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDVIKAIEEGYRLPAPMDCPAGLHQLMLDCWQKERAERPKFEQIVGILDKMIRNPNSLKTPLGTCSRPISPLLDQNTPDFTTFCSVGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMSLGITLVGHQKKIMSSIQTMRAQMLHLHGT 994 The following BLAST results are available for this feature:
BLAST of TCONS_00022872 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.