TCONS_00022863 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022863
Unique NameTCONS_00022863
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1080

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022863 ID=TCONS_00022863|Name=TCONS_00022863|organism=Clytia hemisphaerica|type=transcript|length=1080bp
attttcaaaatatattatctGGATAGTTTCTTGAAAacaatttcaattaa
attacatctTTGTTTCAGGTTAATTATCTATGTAAAACATAACATAATGG
AAATTTGCATacttcttttcatttttagataaTTAATAATAAAATACCTA
CGTATATATCATCATGCCCAATTTTTAAACtttagttaaaattttatgat
AATCTTGTACTAATTATTCAGCAATAATGACTAATTATGTCCATTcctca
aacattttttttgcttcacGGATTAGTGACTTCCTTCTTCATTATGAGGT
CCTTTAGTTCGGTAATTAAGTTAGCCGTGGTTTCTCGTCTTTTTTCATGC
ACCAAGTCATACGTTATGCAATTTTTGGGGTAATTGGTCTTAAAGCTGCT
ATATGAGTAATAATCATGTTACGTTGTTTTATCAAAACTCTAATGTCTCG
TCAGAGTTGAATTACAGAAATGATACTTTGTATAACACATCTAACAAATC
GTATGTTACATATTTTCTGTGAGGGCCAAACCATTCAGAAGATCTGTTCA
TCTTGATTCACTCCACCGCCTCTTAACGATCATAATTTGACAACGACTAA
CAACATATAAACTTTATAATCAGTCACTGCACATGTTTTATTTATGACCC
TCACATTTCTTGCATTTACATTCGAGTATGTCCGGTACATAATGCGGTAC
AGTCTTTATTACACCGTTCGCGTCCGGTGGACATTCCAGTTCGATTTTCT
TTGCTCTTTCTTTGTATGCTTTACAGCAATGACAATGTGACTTGTAGTAA
GGATATTCGGGAGTGTAGGATGTCATCGAATAACAATTGCCATCACAATA
CTTCACTTCAACATCTGTAAgaatgtaaaaaagaaaaatcttttagaAGT
TTATCAAGGTCACTGTTAGtctttttatattttgcatAAGGAAATCACTT
AAAAGCATAACTATGCTCAGAATTGTGTCTGACACTAAGCGTATAAAATT
GTCCCTTTGCTCAAAGTTGTACCTGTTGTGATTATTTGACAAAGCAGAGC
AATTTTGGGGGATCTAACCATGTTTAGAGT
Run BLAST on NCBI

transcript from alignment at sc0000435:96612..97760-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022863 ID=TCONS_00022863|Name=TCONS_00022863|organism=Clytia hemisphaerica|type=transcript|length=1149bp|location=Sequence derived from alignment at sc0000435:96612..97760- (Clytia hemisphaerica)
ATTTTCAAAATATATTATCTGGATAGTTTCTTGAAAACAATTTCAATTAA
ATTACATCTTTGTTTCAGGTTAATTATCTATGTAAAACATAACATAATGG
AAATTTGCATACTTCTTTTCATTTTTAGATAATTAATAATAAAATACCTA
CGTATATATCATCATGCCCAATTTTTAAACTTTAGTTAAAATTTTATGAT
AATCTTGTACTAATTATTCAGCAATAATGACTAATTATGTCCATTCCTCA
AACATTTTTTTTGCTTCACGGATTAGTGACTTCCTTCTTCATTATGAGGT
CCTTTAGTTCGGTAATTAAGTTAGCCGTGGTTTCTCGTCTTTTTTCATGC
ACCAAGTCATACGTTATGCAATTTTTGGGGTAATTGGTCTTAAAGCTGCT
ATATGAGTAATAATCATGTTACGTTGTTTTATCAAAACTCTAATGTCTCG
TCAGAGTTGAATTACAGAAATGATACTTTGTATAACACATCTAACAAATC
GTATGTTACATATTTTCTGTGAGGGCCAAACCATTCAGAAGATCTGTTCA
TCTTGATTCACTCCACCGCCTCTTAACGATCATAATTTGACAACGACTAA
CAACATATAAACTTTATAATCAGTCACTGCACATGTTTTATTTATGACCC
TCACATTTCTTGCATTTACATTCGAGTATGTCCGGTACATAATGCGGTAC
AGTCTTTATTACACCGTTCGCGTCCGGTGGACATTCCAGTTCGATTTTCC
TTGCTCTTTCTTTGTATGNAGTTTTTATTACACCATTCGCGTCCGGTGGA
CATTCCAGTTCGATTTTCTTTGCTCTTTCTTTGTATGCTTTACAGCAATG
ACAATGTGACTTGTAGTAAGGATATTCGGGAGTGTAGGATGTCATCGAAT
AACAATTGCCATCACAATACTTCACTTCAACATCTGTAAGAATGTAAAAA
AGAAAAATCTTTTAGAAGTTTATCAAGGTCACTGTTAGTCTTTTTATATT
TTGCATAAGGAAATCACTTAAAAGCATAACTATGCTCAGAATTGTGTCTG
ACACTAAGCGTATAAAATTGTCCCTTTGCTCAAAGTTGTACCTGTTGTGA
TTATTTGACAAAGCAGAGCAATTTTGGGGGATCTAACCATGTTTAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012849XLOC_012849Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022863-exon-sc0000435-1575043694:97029..97760TCONS_00022863-exon-sc0000435-1575043694:97029..97760Clytia hemisphaericaexon
TCONS_00022863-exon-sc0000435-1575043694:96612..96959TCONS_00022863-exon-sc0000435-1575043694:96612..96959Clytia hemisphaericaexon
TCONS_00022863-exon-sc0000435-1510915933:97029..97760TCONS_00022863-exon-sc0000435-1510915933:97029..97760Clytia hemisphaericaexon
TCONS_00022863-exon-sc0000435-1510915933:96612..96959TCONS_00022863-exon-sc0000435-1510915933:96612..96959Clytia hemisphaericaexon
TCONS_00022863-exon-sc0000435-1491911889:97029..97760TCONS_00022863-exon-sc0000435-1491911889:97029..97760Clytia hemisphaericaexon
TCONS_00022863-exon-sc0000435-1491911889:96612..96959TCONS_00022863-exon-sc0000435-1491911889:96612..96959Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000435supercontigsc0000435:96612..97760 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.198602	0	0	25.2468	18.9685	28.6451	28.6312	7.40995	8.88491	5.77411	5.18248	14.9718	12.9512	2.2501	3.89481	6.37438	10.0763	18.0905	25.3188	12.4215	11.8121	3.60119	3.23919	4.81056	4.83973	13.5596	7.46908	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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