TCONS_00022824 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022824
Unique NameTCONS_00022824
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022824 ID=TCONS_00022824|Name=TCONS_00022824|organism=Clytia hemisphaerica|type=transcript|length=2432bp
AACCATTTcccaaacaaaaaatataaaaatatttttaaaaagatggAAAT
GATTATAGAATTGAATCTGTCATcgaaaacaaatgattttatgtcatgaa
agaatgacaaaaagacTTTATTCTGCTAACAGAAGACACATGAACATAAA
CTGAAGGGACACATGAGAAACAAGGTATATCACTCATAACAAAATTGAGT
TTAATGTTTGAATAAATTCAAGATGGAAAAGTTTGAGAGCATAATTATAA
GTGACGATAATTTGTTAACAAATGCCTTCAAAACTTTGAATGTTTTTCGT
GAGAATGGGGAACTTTGTGACGTTGTTCTCAAAACAGATGATGGTATTGC
AATTCCTGCTCACAAAGTTGTTTTGAGTGCTTCCTCTCCTTATTTTCGTG
CTATGTTTACACTCAACTTTGTTGAATCTTCAAGTTCATTCATCGATATG
AAGTATGTTCCTGGAACGGCGTTACGAGACATGGTGAACTATTTTTACAC
CGGACAACTCTGTGTGAATCATTTAAATGTCATTGGATTGATAGAACTTT
GCCATGTCTTACAGGTGGACGGATTGATTGAAAAATGCGAAGTTTTTCTG
AGGCGCAATCTGTCAACTCGTAATTCTCTTGGTTTGCAAGCATTTGCCAG
ACATTACTCTTTGGCTGGTTTGAAGGATCATGCCATGAGATTTAGCTGCT
GGAATTTTAGTCATATTAAGGAGGAGGAAGAATTCTTTTTGATGCCACAG
AAAGAGTTAAAACAACTGATAGCTCACGATACTTTGAAGGCACAGTCGGA
AGAAAGTATCCTTGAGGCTGCAATTAAATGGCTCGTTTATGATTTTGACA
ACAGAGAAAAACAGTTTGAGGAATTACTTGCTCACATCAGATTCCCATTG
ATGAGCCAGAAATATTTATTGGAAAGTGAGCTTGTCAAATATATTCGTGA
AAAATTTCCAACGTCTAGTAATTTGATTACCAAAGCAATAGACTACCATT
CTCAAAACCCAGGGCTTGATAacatttttgaattgaaaaacttttcaccA
CGTCTGGCCTCAGAAGATATCTTTGTAATTGGGGGTTGGTCTAATGGTCA
AAAGCTCAGTACTGTTCAGTGTTTCAATGTTGATACCTTGAAATGGACTT
CTGTAAACAATATGACTATTGCACATGTTGCAAAAGAGCATTACTTCAGA
GTTATTGTATCCCAAGATGAGCTGTATACTGTTGGCTACAATAAAGTTAT
GAAGTATGACCCTGTTGAAAGTGCTTGGTATAAATTTGCTGATGGACCAG
AAGTTCAATGTAAATGGGCAGGTGTTTGTGAATACGATAATGGATTCTAT
GTTATTGGTGGCAGTACAAATAAAACAAGTAAACGCTTCAATATTCAGAA
AGCAACATGGGAGGACCTTCCTGTTGGCCATCATGCAAGGTACTATCCTG
GAATTgctgttatgaatgaaaatttGTATGTTATCGGTGGACTGGATAAC
AAATGGAGGCCGTTGAAAGTTTGTGAAATGTATGATCCACGACAGAGAAA
ATGGATTGAAATTGCAAAGTTACGCTCTCCAAGATGGAATTTAGGTGTTG
CTACACTCAGAAATAGACTTTATGCCATTGGTGGAAATCATAATTTAGAA
CAATTTGCAAATACTGTTGAAGTGTATGACCCAAAAGAAGATAGCTGGGA
GCGCTCGGTTGCATCAATGAACTGTGGACGAAGATGTTTAGGTGTTGCAG
TTGTGAATAATTTGATTTATGTTGTAGGTGGACGAGTAACCAATACCNAG
TTGCAGTTGTGAATGATTTGATTTATGTTGTAGGTGGACGAGTAACCAAT
ACCATTGAATGCTACGATGAAGATAAAGATGAATGGAAAATAGTTGGCTC
TGTCAATTCGTGTTGTAATTTTGGATGTGTGGCATTGAGGCTGATctaat
ttgaaaatatGAAGGAGGCTTATGATGTACATACGTGGAAAGCAGATGAC
CTTTATAAAGATTTTGGAAGAATCCGAAATATTTTGTAAACACAGCTCGT
CAGGAAATTGGAGGAAACTGTTTTCGTCGCGGGACAGTTTTTGAGAGAAT
TTCGCAGCTTGTTTTGTGGTTAACCAATTATAATGAACTGTGATTTAAGC
GCCAGATAAAGATGTTGTCCCCTCTATTGTGATTTTCTAACCAAATATGA
ACATTGCTCTGTATCCTTTTTCTCATCATTCAAGAGTTTTCGAATCTGTG
CTTTTTATTAACAAGTGTGAGGAAATGTAACTATCCAACGTAATCTAATG
CAATCTATCCATCAGTTTTTCATTGTCTTATCGCTCTTACAGTACATTCG
ATACGAATGCACAGTTCATTTTAATTAACCATATGTCTCAGATTGAGTTT
ATTTTACTGTCCGAAATTTTGTTAAATGAGCG
Run BLAST on NCBI

protein sequence of TCONS_00022824-protein

>TCONS_00022824-protein ID=TCONS_00022824-protein|Name=TCONS_00022824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MEKFESIIISDDNLLTNAFKTLNVFRENGELCDVVLKTDDGIAIPAHKVV
LSASSPYFRAMFTLNFVESSSSFIDMKYVPGTALRDMVNYFYTGQLCVNH
LNVIGLIELCHVLQVDGLIEKCEVFLRRNLSTRNSLGLQAFARHYSLAGL
KDHAMRFSCWNFSHIKEEEEFFLMPQKELKQLIAHDTLKAQSEESILEAA
IKWLVYDFDNREKQFEELLAHIRFPLMSQKYLLESELVKYIREKFPTSSN
LITKAIDYHSQNPGLDNIFELKNFSPRLASEDIFVIGGWSNGQKLSTVQC
FNVDTLKWTSVNNMTIAHVAKEHYFRVIVSQDELYTVGYNKVMKYDPVES
AWYKFADGPEVQCKWAGVCEYDNGFYVIGGSTNKTSKRFNIQKATWEDLP
VGHHARYYPGIAVMNENLYVIGGLDNKWRPLKVCEMYDPRQRKWIEIAKL
RSPRWNLGVATLRNRLYAIGGNHNLEQFANTVEVYDPKEDSWERSVASMN
CGRRCLGVAVVNNLIYVVGGRVTNTXLQL
Run BLAST on NCBI

transcript from alignment at sc0000434:38063..43395-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022824 ID=TCONS_00022824|Name=TCONS_00022824|organism=Clytia hemisphaerica|type=transcript|length=5333bp|location=Sequence derived from alignment at sc0000434:38063..43395- (Clytia hemisphaerica)
AACCATTTCCCAAACAAAAAATATAAAAATATTTTTAAAAAGATGGAAAT
GATTATAGAATTGAATCTGTCATCGAAAACAAATGATTTTATGTCATGAA
AGAATGACAAAAAGACTTTATTCTGCTAACAGAAGACACATGAACATAAA
CTGAAGGGACACATGAGAAACAAGGTATATCACTCATAACAAAATTGAGT
TTAATGTTTGAATAAATTCAAGATGGAAAAGTTTGAGAGCATAATTATAA
GTGACGATAATTTGTTAACAAATGCCTTCAAAACTTTGAATGTTTTTCGT
GAGAATGGGGAACTTTGTGACGTTGTTCTCAAAACAGATGATGGTATTGC
AATTCCTGCTCACAAAGTTGTTTTGAGTGCTTCCTCTCCTTATTTTCGTG
CTATGTTTACACTCAACTTTGTTGAATCTTCAAGTTCATTCATCGATATG
AAGTATGTTCCTGGAACGGCGTTACGAGACATGGTGAACTATTTTTACAC
CGGACAACTCTGTGTGAATCATTTAAATGTCATTGGATTGATAGAACTTT
GCCATGTCTTACAGGTGGACGGATTGATTGAAAAATGCGAAGTTTTTCTG
AGGCGCAATCTGTCAACTCGTAATTCTCTTGGTTTGCAAGCATTTGCCAG
ACATTACTCTTTGGCTGGTTTGAAGGATCATGCCATGAGATTTAGCTGCT
GGAATTTTAGTCATATTAAGGAGGAGGAAGAATTCTTTTTGATGCCACAG
AAAGAGTTAAAACAACTGATAGCTCACGATACTTTGAAGGCACAGTCGGA
AGAAAGTATCCTTGAGGCTGCAATTAAATGGCTCGTTTATGATTTTGACA
ACAGAGAAAAACAGTTTGAGGAATTACTTGCTCACATCAGATTCCCATTG
ATGAGCCAGAAATATTTATTGGAAAGTGAGCTTGTCAAATATATTCGTGA
AAAATTTCCAACGTCTAGTAATTTGATTACCAAAGCAATAGACTACCATT
CTCAAAACCCAGGGCTTGATAACATTTTTGAATTGAAAAACTTTTCACCA
CGTCTGGCCTCAGAAGATATCTTTGTAATTGGGGGTTGGTCTAATGGTCA
AAAGCTCAGTACTGTTCAGTGTTTCAATGTTGATACCTTGAAATGGACTT
CTGTAAACAATATGACTATTGCACATGTTGCAAAAGAGCATTACTTCAGA
GTTATTGTATCCCAAGATGAGCTGTATACTGTTGGCTACAATAAAGTTAT
GAAGTATGACCCTGTTGAAAGTGCTTGGTATAAATTTGCTGATGGACCAG
AAGTTCAATGTAAATGGGCAGGTGTTTGTGAATACGATAATGGATTCTAT
GTTATTGGTGGCAGTACAAATAAAACAAGTAAACGCTTCAATATTCAGAA
AGCAACATGGGAGGACCTTCCTGTTGGCCATCATGCAAGGTTTAATAATT
TTCAATTATAATGGATTTTTTTTTCTACCACAAATATTAGTTCCCGCAAA
AAATTAGTTCCAATAAGTTAGTAATTATTTCAAACTTGTGTTTGAAAAAT
CTAAATTACTTATTATATAAGAAATAAAGATGTTTCAAGCAATAATATTT
AGAGGTCTTAATAGGCTTCAAATTGGAAAGAATCTATAATGTAGCAAACT
TTAGTTATACTATGGTAATTATTATTTTAGGTACTATCCTGGAATTGCTG
TTATGAATGAAAATTTGTATGTTATCGGTGGACTGGATAACAAATGGAGG
CCGTTGAAAGTTTGTGAAATGTATGATCCACGACAGAGAAAATGGATTGA
AATTGCAAAGTTACGCTCTCCAAGATGGAATTTAGGTGTTGCTACACTCA
GAAATAGACTTTATGCCATTGGTGGAAATCATAATTTAGAACAATTTGCA
AATACTGTTGAAGTGTATGACCCAAAAGAAGATAGCTGGGAGCGCTCGGT
TGCATCAATGAACTGTGGACGAAGATGTTTAGGTGTTGCAGTTGTGAATA
ATTTGATTTATGTTGTAGGTGGACGAGTAACCAATACCNAGTTGCAGTTG
TGAATGATTTGATTTATGTTGTAGGTGGACGAGTAACCAATACCATTGAA
TGCTACGATGAAGATAAAGATGAATGGAAAATAGTTGGCTCTGTCAATTC
GTGTTGTAATTTTGGATGTGTGGCATTGAGGCTGATCTAATTTGAAAATA
TGTAAGTCTTTCTTGATATTATTTATGATGTCTCTCTTTTTAATGATATG
ATCTTGCCCAAATTTACATACGCTAGTGGTGAAGGGGAAATTTAGGAGCT
AACAATAACGTAATGATGTCTTTTAAATGTCATTGGACTGAATGGTAGAT
TTCTACTTCAAATAAAATAGAAAATAGATTATGGTATATTCATATGGTTA
TTGTGTAATCAATGAATTTATGCACTCAGCGTGAAATCTCTTTAAAAAGA
TTGTAAGTGATATGAAAAAAATCATGTTTGAGGTTTTTTCTTTCAACCGA
CCAAATCAAATTTGGTACTTGATACTCAATTTAATTACCTTGATTAACTT
TAATTAGAAAAAATTGAGTTTCTTTTGATCTATATTTAGAGGAGATGTTT
CTGCTTTTGATATTGGCTGATGTTGTGAATGTGTGTTATTTTTCCTTTGG
AGTCTTATGTTTTCGTATTTCTCTCAATTGTGATCATTGGAATATGGAAG
GAACTTTAAAGGAAATATTTCAGATTCCCTCTNTGTATTTCTCTCAATTG
TGATCATTGGAATATGGAAGGAACTTTAAAGGAAATATTTCAGATTCCCT
CTACTTTAAAAAATAATAATCAAAGAATGGCTTTTTAAATCATTGCTTAT
TGACACTCTTAGCATTAGATTAGGAAAAATCCCTGGCTCTTGTCATTCAA
TAAAAGATAATTATGCAAATAATCTCTTTGATTCTGAATCGATTAGAATG
TATTTTGATTTGAAAAACAGGCAGTTTAATTTGAAAAGACTGACTTAGGA
ACTTTCCTATACCTACGTTATGTTTTGATTTTATTTATATAAAAGATTTC
TTGTAGGAACAAAAGAACGGGTTTAAGGGCAACACATTATAAACGGACGC
AAGGCTAATTCTTCTATTTTTTTCTGATTTCCTTTAGTTACATTTTATAA
AGGCGCTAGTTCCTGCTCTGTCATTGACCTTTTTTGTTTTTCATTTGCCT
TGGAAAAGAAGGAAGTGTAAAGTGACGTCATGCTTTTCAATTATGATGTA
ATCTTGCAATCTTATTTTCCTGACAACGTTTTTTTCTTCAATTACTGAAG
TTTCCAGGTTTTTGTTACACCAAGCCGGATAGACATAATTAATATAATAA
GTTTTACTCATTTCAAGATACTTTCGTTCATGTTTATTTTGTCGTTAAAT
TTATCCCACAACAACAAAACAGTGTTTAAGTTTTTAGAACTTTATAGAAT
GAAATTCCTTTGCTGTTTAAATTGTACACAACTCAAGCACATCATGATCT
ACAGGCCTTTGTACTTTTCAACAAGAAGACTTGTTAATTCTATAAGAATT
TTAATGTTTCAAACCTTATTGTAAAGCTTTTCTTGTTTGACTAGAGATCA
GTTCACGTTAAGTCAATAAATTTGTGTTTATTTTGTTTCAATAATGCAAA
CAAAGCCGAAATTTAAATCAATGAGTCTGAGATTTGTTATCAAATCAAAT
CACTCCTGTATCAATGTAGTCATTTTAGCATAGAGCTTATTATAACTCCA
CAATGTCTGATGATACCTTGACATGATAGCTTGTGATATAAGAAACGTTT
ACTTCAAAAACCTTATTCTTCGCCTGGTCAAAGCCCTTACTTGATGAAAA
CTAGAAAAGGTACCGCAAATCTTTCTTCCGTAAGCGACCCAAGCCCTGAT
TTAGCGGCCCAAGACCTGAATTACCAGTTCAAGACGTGGAAAACGTTGCG
ATTTCTGATACTTGCATGTTTGCCCTGATTTTAGAATAGCGCTGAAGAGC
TGAATCATCGCCTTAAAAAGGTCAAAAAACTGTTCAAATACATTAATTAC
AAAATCATCAAATGGAAGTAGGAAATAACCGTTCATTTATGCTCGTTTAT
CAAAGAAAAATCTCAGAAATCGCAAAGTTTTCCAGGTCTTGGGCCAATAA
TTCAGGTCTTGGGCCGATAATTTAGATCTTGGGCCGGTAAATCAGGGCTT
GGGTCGCTTACGGAAGTAAAATTTGCAAAGGCGCCATTGTAAAGAGAAAA
CTGATTTGCTCCGTAAAAGTCTAATAGGAAGATATTTTTCAAGCTTTGTA
ATAAGGAAAATACATGCGATTCGATAAAATTATGCTCGGTTTAAAAAGTC
AAAATTTTAAGCATGTATTAAATTTTTTGACTATTTTGAGTGTATTAAGC
AAAGTGATGTAACCTTCATGACGAATTTAATTTCCTGAACAAAAATTTAT
ACCTTATATGGAATAAAATATGGAAATAATTTTTACAAACAAAATAGGAT
TTTTATTACCCTCTAAGACACTTCAAGTGTCCAAATTTTAAAAAGTTTAA
AAGTGATGTAATTAATTTTTGTTCTATTTTTTGCCAGGAAGGAGGCTTAT
GATGTACATACGTGGAAAGCAGATGACCTTTATAAAGATTTTGGAAGAAT
CCGAAATATTTTGTAAACACAGCTCGTCAGGAAATTGGAGGTAGGCTTAA
CCCCGATTAAAATTATTTAATGTATATATTTTTTAAAACGAAATGCATAA
AGTTTTTTATAAAACGTACAATAAGTCTACCATACAGTATGTTATATTTA
ATGACAGGTTATTTGATGTTTCCTTATATCCCTTATATTTTCAATCATTA
TGAAGGCTTCTTAGTTTTTTTCCTTTTTAGACCTTTTTTTGCCGTTTTTA
TGGCTTAAACCGCTATGTTAGTACATTTCAACCTCACGTCGCAATGATAT
TATTATGCTTATAGGAAACTGTTTTCGTCGCGGGACAGTTTTTGAGAGAA
TTTCGCAGCTTGTTTTGTGGTTAACCAATTATAATGAACTGTGATTTAAG
CGCCAGATAAAGATGTTGTCCCCTCTATTGTGATTTTCTAACCAAATATG
AACATTGCTCTGTATCCTTTTTCTCATCATTCAAGAGTTTTCGAATCTGT
GCTTTTTATTAACAAGTGTGAGGAAATGTAACTATCCAACGTAATCTAAT
GCAATCTATCCATCAGTTTTTCATTGTCTTATCGCTCTTACAGTACATTC
GATACGAATGCACAGTTCATTTTAATTAACCATATGTCTCAGATTGAGTT
TATTTTACTGTCCGAAATTTTGTTAAATGAGCG

Coding sequence (CDS) from alignment at sc0000434:38063..43395-

>TCONS_00022824 ID=TCONS_00022824|Name=TCONS_00022824|organism=Clytia hemisphaerica|type=CDS|length=3180bp|location=Sequence derived from alignment at sc0000434:38063..43395- (Clytia hemisphaerica)
GTACTATCCTGGAATTGCTGTTATGAATGAAAATTTGTATGTTATCGGTG
GACTGGATAACAAATGGAGGCCGTTGAAAGTTTGTGAAATGTATGATCCA
CGACAGAGAAAATGGATTGAAATTGCAAAGTTACGCTCTCCAAGATGGAA
TTTAGGTGTTGCTACACTCAGAAATAGACTTTATGCCATTGGTGGAAATC
ATAATTTAGAACAATTTGCAAATACTGTTGAAGTGTATGACCCAAAAGAA
GATAGCTGGGAGCGCTCGGTTGCATCAATGAACTGTGGACGAAGATGTTT
AGGTGTTGCAGTTGTGAATAATTTGATTTATGTTGTAGGTGGACGAGTAA
CCAATACCNAGTTGCAGTTGTGAATGGAAAAGTTTGAGAGCATAATTATA
AGTGACGATAATTTGTTAACAAATGCCTTCAAAACTTTGAATGTTTTTCG
TGAGAATGGGGAACTTTGTGACGTTGTTCTCAAAACAGATGATGGTATTG
CAATTCCTGCTCACAAAGTTGTTTTGAGTGCTTCCTCTCCTTATTTTCGT
GCTATGTTTACACTCAACTTTGTTGAATCTTCAAGTTCATTCATCGATAT
GAAGTATGTTCCTGGAACGGCGTTACGAGACATGGTGAACTATTTTTACA
CCGGACAACTCTGTGTGAATCATTTAAATGTCATTGGATTGATAGAACTT
TGCCATGTCTTACAGGTGGACGGATTGATTGAAAAATGCGAAGTTTTTCT
GAGGCGCAATCTGTCAACTCGTAATTCTCTTGGTTTGCAAGCATTTGCCA
GACATTACTCTTTGGCTGGTTTGAAGGATCATGCCATGAGATTTAGCTGC
TGGAATTTTAGTCATATTAAGGAGGAGGAAGAATTCTTTTTGATGCCACA
GAAAGAGTTAAAACAACTGATAGCTCACGATACTTTGAAGGCACAGTCGG
AAGAAAGTATCCTTGAGGCTGCAATTAAATGGCTCGTTTATGATTTTGAC
AACAGAGAAAAACAGTTTGAGGAATTACTTGCTCACATCAGATTCCCATT
GATGAGCCAGAAATATTTATTGGAAAGTGAGCTTGTCAAATATATTCGTG
AAAAATTTCCAACGTCTAGTAATTTGATTACCAAAGCAATAGACTACCAT
TCTCAAAACCCAGGGCTTGATAACATTTTTGAATTGAAAAACTTTTCACC
ACGTCTGGCCTCAGAAGATATCTTTGTAATTGGGGGTTGGTCTAATGGTC
AAAAGCTCAGTACTGTTCAGTGTTTCAATGTTGATACCTTGAAATGGACT
TCTGTAAACAATATGACTATTGCACATGTTGCAAAAGAGCATTACTTCAG
AGTTATTGTATCCCAAGATGAGCTGTATACTGTTGGCTACAATAAAGTTA
TGAAGTATGACCCTGTTGAAAGTGCTTGGTATAAATTTGCTGATGGACCA
GAAGTTCAATGTAAATGGGCAGGTGTTTGTGAATACGATAATGGATTCTA
TGTTATTGGTGGCAGTACAAATAAAACAAGTAAACGCTTCAATATTCAGA
AAGCAACATGGGAGGACCTTCCTGTTGGCCATCATGCAAGGTACTATCCT
GGAATTGCTGTTATGAATGAAAATTTGTATGTTATCGGTGGACTGGATAA
CAAATGGAGGCCGTTGAAAGTTTGTGAAATGTATGATCCACGACAGAGAA
AATGGATTGAAATTGCAAAGTTACGCTCTCCAAGATGGAATTTAGGTGTT
GCTACACTCAGAAATAGACTTTATGCCATTGGTGGAAATCATAATTTAGA
ACAATTTGCAAATACTGTTGAAGTGTATGACCCAAAAGAAGATAGCTGGG
AGCGCTCGGTTGCATCAATGAACTGTGGACGAAGATGTTTAGGTGTTGCA
GTTGTGAATAATTTGATTTATGTTGTAGGTGGACGAGTAACCAATACCNA
GTTGCAGTTGTGAATGGAAAAGTTTGAGAGCATAATTATAAGTGACGATA
ATTTGTTAACAAATGCCTTCAAAACTTTGAATGTTTTTCGTGAGAATGGG
GAACTTTGTGACGTTGTTCTCAAAACAGATGATGGTATTGCAATTCCTGC
TCACAAAGTTGTTTTGAGTGCTTCCTCTCCTTATTTTCGTGCTATGTTTA
CACTCAACTTTGTTGAATCTTCAAGTTCATTCATCGATATGAAGTATGTT
CCTGGAACGGCGTTACGAGACATGGTGAACTATTTTTACACCGGACAACT
CTGTGTGAATCATTTAAATGTCATTGGATTGATAGAACTTTGCCATGTCT
TACAGGTGGACGGATTGATTGAAAAATGCGAAGTTTTTCTGAGGCGCAAT
CTGTCAACTCGTAATTCTCTTGGTTTGCAAGCATTTGCCAGACATTACTC
TTTGGCTGGTTTGAAGGATCATGCCATGAGATTTAGCTGCTGGAATTTTA
GTCATATTAAGGAGGAGGAAGAATTCTTTTTGATGCCACAGAAAGAGTTA
AAACAACTGATAGCTCACGATACTTTGAAGGCACAGTCGGAAGAAAGTAT
CCTTGAGGCTGCAATTAAATGGCTCGTTTATGATTTTGACAACAGAGAAA
AACAGTTTGAGGAATTACTTGCTCACATCAGATTCCCATTGATGAGCCAG
AAATATTTATTGGAAAGTGAGCTTGTCAAATATATTCGTGAAAAATTTCC
AACGTCTAGTAATTTGATTACCAAAGCAATAGACTACCATTCTCAAAACC
CAGGGCTTGATAACATTTTTGAATTGAAAAACTTTTCACCACGTCTGGCC
TCAGAAGATATCTTTGTAATTGGGGGTTGGTCTAATGGTCAAAAGCTCAG
TACTGTTCAGTGTTTCAATGTTGATACCTTGAAATGGACTTCTGTAAACA
ATATGACTATTGCACATGTTGCAAAAGAGCATTACTTCAGAGTTATTGTA
TCCCAAGATGAGCTGTATACTGTTGGCTACAATAAAGTTATGAAGTATGA
CCCTGTTGAAAGTGCTTGGTATAAATTTGCTGATGGACCAGAAGTTCAAT
GTAAATGGGCAGGTGTTTGTGAATACGATAATGGATTCTATGTTATTGGT
GGCAGTACAAATAAAACAAGTAAACGCTTCAATATTCAGAAAGCAACATG
GGAGGACCTTCCTGTTGGCCATCATGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012825XLOC_012825Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022824-proteinTCONS_00022824-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022824-exon-sc0000434-1575043694:41957..43395TCONS_00022824-exon-sc0000434-1575043694:41957..43395Clytia hemisphaericaexon
TCONS_00022824-exon-sc0000434-1575043694:41195..41715TCONS_00022824-exon-sc0000434-1575043694:41195..41715Clytia hemisphaericaexon
TCONS_00022824-exon-sc0000434-1575043694:38706..38808TCONS_00022824-exon-sc0000434-1575043694:38706..38808Clytia hemisphaericaexon
TCONS_00022824-exon-sc0000434-1575043694:38063..38431TCONS_00022824-exon-sc0000434-1575043694:38063..38431Clytia hemisphaericaexon
TCONS_00022824-exon-sc0000434-1510915933:41957..43395TCONS_00022824-exon-sc0000434-1510915933:41957..43395Clytia hemisphaericaexon
TCONS_00022824-exon-sc0000434-1510915933:41195..41715TCONS_00022824-exon-sc0000434-1510915933:41195..41715Clytia hemisphaericaexon
TCONS_00022824-exon-sc0000434-1510915933:38706..38808TCONS_00022824-exon-sc0000434-1510915933:38706..38808Clytia hemisphaericaexon
TCONS_00022824-exon-sc0000434-1510915933:38063..38431TCONS_00022824-exon-sc0000434-1510915933:38063..38431Clytia hemisphaericaexon
TCONS_00022824-exon-sc0000434-1491911889:41957..43395TCONS_00022824-exon-sc0000434-1491911889:41957..43395Clytia hemisphaericaexon
TCONS_00022824-exon-sc0000434-1491911889:41195..41715TCONS_00022824-exon-sc0000434-1491911889:41195..41715Clytia hemisphaericaexon
TCONS_00022824-exon-sc0000434-1491911889:38706..38808TCONS_00022824-exon-sc0000434-1491911889:38706..38808Clytia hemisphaericaexon
TCONS_00022824-exon-sc0000434-1491911889:38063..38431TCONS_00022824-exon-sc0000434-1491911889:38063..38431Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000434supercontigsc0000434:38063..43395 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.71252	4.23459	3.63379	3.78892	4.75113	2.46733	1.56366	1.63676	1.90363	1.93772	3.28384	1.61078	7.94318	4.59343	4.08216	2.49902	5.62711	6.26991	6.38727	6.20482	10.3798	10.9063	6.44429	8.85331	8.20086	6.26015	11.7812	9.15639	4.16207	4.56534
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR011705BACK
IPR006652Kelch_1
IPR017096BTB-kelch_protein
IPR015915Kelch-typ_b-propeller
IPR011333SKP1/BTB/POZ
IPR011043Gal_Oxase/kelch_b-propeller
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00022824 vs. Swiss-Prot (Human)
Match: KLH20 (Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4)

HSP 1 Score: 253.447 bits (646), Expect = 3.649e-73
Identity = 162/526 (30.80%), Postives = 263/526 (50.00%), Query Frame = 1 
Query:  271 NAFKTLNVFRENGELCDVVLKTDDGIAIPAHKVVLSASSPYFRAMFTLNFVESSSSFIDMKYVPGTALRDMVNYFYTGQLCVNHLNVIGLIELCHVLQVDGLIEKCEVFLRRNLSTRNSLGLQAFARHYSLAGLKDHAMRFSCWNFSHIKEEEEFFLMPQKELKQLIAHDTLKAQSEESILEAAIKWLVYDFDNREKQFEELLAHIRFPLMSQKYLLESELVKYIREKFPTSSNLITKAIDY--HSQNPGLDNIFELKNFSPRLASEDIFVIGGWSNGQKLSTVQCFNVDTLKWTSVNNMTIAHVAKEHYFRVIVSQDELYTVG-------YNKVMKYDPVESAWYKFADGPEVQCKWA-GVCEYDNGFYVIGGSTNKTS----KRFNIQKATWEDLPVGHHARYYPGIAVMNENLYVIGGLDNKWRPLKVCEMYDPRQRKWIEIAKLRSPRWNLGVATLRNRLYAIGGNHNLEQFANTVEVYDPKEDSWERSVASMNCGRRCLGVAVVNNLIYVVGGRVTNTXLQ 1806
               + +N+ R++ ELCDVVL       I AH+V+LSA SPYFRAMFT    ES  + + ++ +   A+  ++++ YT Q+ V   NV  L+    +LQ+  + E C  FL+R L   N LG++AFA  +S   L   A +F+  NF  + E EEF L+P  +L  +I+ D L  +SEE +  A + W+ Y    R  Q  ++L H+R PL+S K+L+ +     + +      +L+ +A +Y    Q   L      +   P    E +F +GGW +G  +S+V+ ++  T +W  V +M+     +     V V  D LY VG        N V +YDP  + W      P   C+ + GV       Y +GG    +     +R++ ++  W  +      R    +AV+   LY +GG D    PL   E Y+P++ +W  IA + + R +LG A  ++ +YA+GG  +  + + + E Y+P+ + W   V +M   R  +G+AVVN  +  VGG    T L+
Sbjct:   53 QTLEVINLLRKHRELCDVVLVVG-AKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLLPQERPLMQGPRTRPRKPIRCGEVLFAVGGWCSGDAISSVERYDPQTNEWRMVASMS----KRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSSDV-APTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVERYDPKENKWTRVASMSTRRLGVAVAVLGGFLYAVGGSDGT-SPLNTVERYNPQENRWHTIAPMGTRRKHLGCAVYQDMIYAVGGRDDTTELS-SAERYNPRTNQWS-PVVAMTSRRSGVGLAVVNGQLMAVGGFDGTTYLK 569
The following BLAST results are available for this feature:
BLAST of TCONS_00022824 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLH203.649e-7330.80Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE... [more]
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