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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022811 ID=TCONS_00022811|Name=TCONS_00022811|organism=Clytia hemisphaerica|type=transcript|length=2030bp
ggaaatcagaaaatttttggagatgcgggagaaaatcctgaaaatgcgaG
AGATTTGGCTGAATTTCTTTCCTGCGAGAGAAAACGTTGGCATGAGGGAA
TGTCCCACCCAATGTGGGAGAGTTGACACCTATGTAAAAAAGATGGTTTG
CAAGGAATGTGGTGGAGAAGtcatttttgaagaatttcatATTTGTTTGG
ATTGTGGTGTTATACAAAgtaCAGCATCTGAAATTGCTACTGCCGCCTTA
TCAGATTATTCTGAAACTCATCAACAAGACCGTTATGTGAAGCTgaacaa
gaaaattgatagCAAAGCCTTTCGAGAATTCAAATCTAGGTTCTTATCGC
TAACATACCATTTAAATTCTCCAGTATCTGTTATCAATAAAGGGGATCAG
CTATTACCAGATCTTTTCAATTTATGTCGACATTCTCGTCACATTATAAA
GCATGCCTACATGTTGGCTTTGCTGTTTTACACATACGAAAGCCATGGTG
GATCGCCAATCTCATTGCAGACGTACCTTCAGAAAGTTCCTCCTCTTAGC
CCTCATATCAATGTCACAAAAATCTTTAACAAcgtgaaaacattttttaa
atttccaaatcacTGTAGAAAAGAGTTGGTTGAGATTAATGTAACACAAC
ACATAAAACAATTATCTCAAATTATTCTAAAACCAGATGTTAGGGAAGAA
ATCTCTCTTGGTGATCTTGAGGATCTAGCAAATCGTTTGGCTAAACTGAT
TCGAAATAAATCATGGCACACAGGGGTTCATTTTTCCGTTTTGAGTGAAA
TTGAGCATGTAAGCGTAGCATCTGTAGTTATTGCAGCTCATTGTCAAATT
TCACTACTTTCGAGGAAACGAGAACATTTTTCACGAAAAAAGCGCAGATC
TTTTAGATACGAAACAATTAATTTTGAAGaactttgtaaaaaatctgcat
TCACTCTGCGTACATTAAACAAATGGATATCTGAAGTTCAAAATCATTTA
TATCACATATACAAATCAATGCCAGCTTGTCCTGGAAGTATCAAAGGACA
TAAATTTGTTGGTCAAGTACTGGTTCAAATTCTTGATTATCTAGATTTGG
AGATTGATGACATTGATCCTGAAGATTTTGAGCGTGCAGATAAACGActg
attttgaaaagaaattttttgttgggctgtttgattgattttcttATGAA
AGAACAAGAAGGAAAAGGAAAGCTTATAAAATCTGAAATGAAAGATCAAT
CGTGCCCTTTTCCCTATAAGAAATTTCATGAACATACCAAAAGCCTTGTA
TCATCTAGTCAAGATTTTTCAGACTGCGTCATTCATTTAAATGCTAAGag
aaatattatttattttggtGAGGACCTTATTGCCCTACAGCACATGGAAT
TGATGTATGAGCTTTTCGAGAATGGTGCATcatttgaagaattgaaaaca
gaaaaattgTCTAATTTAACAAGGAAATATATTGAAAGTAAGGAAAGTTC
TTCAGAACTTGATTTTGACCCAGAGGAAGACGATAATTTAAATAAATACA
TTCGCACTAGAGAAGAAATTAAATTAGTATCATCAATGGGAAGCTGTTGA
ATACTTTTGTCACCATCTCCTATATCGTATTATGATTAGAAAAATGATAA
CGTAATTCAACTCTTGTTCAAATGGATGTTGATATCATTTTGCTCATCTG
TGGAAACCACGTGCTTTCAACGGAAACtgatttaaaatctttttaacttT
GACTTGAAGGATGCGGAATTTTGTGGAtggaaaataatcttttttcaatg
CGAAAAGTTGCATTTTTTAGAAATAGACCTATTCAGGCTGGACTGAGTTT
TCTGACCCTAGAATTTGAAGGTGGGACAGtttattttgacgttttatgAA
AGTTCTGTTTACATTTGGATAATTTTAAAATGGAAACAGGAAGAGGTAGT
TCACGATTTTCAAGCTTAAGATAGAATGAGAAAGACAAAATAGCTTCtga
tttaaaaagaaagaaattcttCTAAAAAAT Run BLAST on NCBI transcript from alignment at sc0000434:47200..52805+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022811 ID=TCONS_00022811|Name=TCONS_00022811|organism=Clytia hemisphaerica|type=transcript|length=5606bp|location=Sequence derived from alignment at sc0000434:47200..52805+ (Clytia hemisphaerica)
ggaaatcagaaaatttttggagatgcgggagaaaatcctgaaaatgcgaG
AGATTTGGCTGAATTTCTTTCCTGCGAGAGAAAACGTTGGCATGAGGGAA
TGTCCCACCCAATGTGGGAGAGTTGACACCTATGTAAAAGTAGTTGATAA
TAACTAATGAAATGAAAACAACTAAAGCTAAAAAGGGCTGCAAAAAGAag
taccatcaactgctctaatgtgggacgattggttgaaacatggaactgtt
gatatctggcctatATTTTCACCTacttttaaatctctttgacaacaaat
ttgttttgataactccaccaagtttatcaatcatacttttgtcataacat
gtcacgataactttcactgattgcaagccctttttaacttttttgttttc
attcaaaatgaccggacgccaattggagaattagagaacgcctgcctaac
cgcctatcacctgatgggattaacaaataacaagtgtgtaacttgccgca
cgattgatgtcaaacgctccatcgttttgccactaatatggtcttcttcg
ttccagatatttgcgtgtgttccactacggatttttttcatatttcaaca
CAGCCTACTCGgtgtgaaagagaaattgtgtattttttaatacgtcgttt
attaactcaaatcaaatgactttggaagtttggtgaaatggtggctgaat
tgccgtcccatgttttgtcagatagtcccaagttagagcagttgacggta
gttaATGCAGAGCTAAAAGACCATCACAAGGATATAGTGATAGTGTATAG
TAAAGTGAGAGGCTAAGGTGATAATGTAGACCTAAAAGACTTGTGAtttg
aaaaaacattgaaatatacattaaattttttagataatttatAAATAtga
ttacttaaaattaaatattataaTTCAGTATTTTAAGTAtaagctaaaaa
gaaaatagtgAATAAATAGATTTTGCCTTGATTGCACAACCTGAGCTGAA
TAGAATATAGATTTAGTGAGAGTTTGTAAGATTAGCGGATGATGGTCTCT
TAGTGCCTTGCACGAtaggcggctgtaaaatcccNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGCCCTtatttttggcacccgtggcctctcagtgccttgcacaacgggc
ggctgtaaaatcccacccttcatatatttgtttcaatctgtgatcctaag
gcttacgttttttctcatcttcaatttactgaagaaagcgggaatttgat
gcaagagttagattgtcaacaaagtgccataaaaaatcattgaataagag
aagaacttaaaatcttcaatattttcattttgaagaattggtgcaaaaaa
gtgaaacatagaaaagtttcatttttcattgcattaattgaaatggggga
tttggaaaatttcctctgttttgttttttgtgcaaacccctgtaactatc
aGTCAGTGGAAGTACTTCGATTTGTGAAGCGTATTTACGtcacatagaac
aaaagaaaatagcaaaagaacaggaattacccatagccacCATTTTGCAA
CCATAGGGAATCGCAATTTTACGAAATGGGAAACAAAGAAACTTTCGTTT
TCcgattgtctttttaatctgccatgaagtgttataagATTCAGAAAGAC
ACATTCTCCTACAAAGAGGCTtaaaaaaaatgaccaaaaaatgtcatttt
atcttaacaattttgtaaactaTGTCACAACCACATAGCGCTGACTTTTG
Gttttatgacttgttctcactcgtttggtttccgttataaaaagaaagtc
gttattgtgaactttgaacatgcttaaaatcaaggtacttccactaactg
actatgggcaagcacctccttgctaagatgttggcttgaaattgaaaatg
aaattactgaaaatgaaagtaaaatcagccCGAACTCAAAATCCGATAAT
CTTGATATACCAGTTTAAGTCTAAACTGCCTAAAACTTGCCTTCCTCAAA
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccaaaaaaa
aaaaaaaaaaaaaaattcacgtCACCTGCGGGGCAAATCACACGCTCCTA
ATTTGTTTCATAAATTGGGCGGTGGGCAGTTTGGCGGCGAACGTTCTATA
ATTCTCCAATCAGTGTCGGCCATTTTGAAGCAgaacaaaaatactaaaaa
agtcATGCTAGCactgaaattggccaaaactaAAAAAGAATTTGCATTTG
ACACAGTGTCTATTTTTATTCCTTGTTGGTTGCCAAGGGGTGTTATCCTT
TCTCAGTTGGGAGAAACTAGTTGAAGACGTaaaagaaattcattttgttt
AGTATTCTTCGTAGCAGAAAGAGATAAACatattaaacttaaaatttgac
ttttcctCCGTCCGTGACATTCTGTACATGACAAGCACCTTCATTACCTT
GGCTGAAatacaaaattcttaaaatttgtcaaattctTTGGTTTTTAATC
CTTAAAACCTTTGTCTGATCAtgttagaaattcaaaaaacttgTTCAAAC
CAGttcaaaaccagttttctgaGATAGAATTTTAGCCTGTTttggaaatt
taaaattatgctTATTTCATTTGtgacagattttttaatttggaaaaaaa
gtttcgtTGTTTTTATCCCCTTAGGGGGAGGTATTAAAACTTGCCATGAG
AATTAGGGAAGATTCTTTCTGGTTTCTCTATGATACAATGAAATAGCTAT
CAAATTCTGTTTGTGACGCTTACTGTATGGAGGATTTCAATTTCCCCTTG
TAGGACTACTAGGTATAGATAATTGTATTTCTGTCCCAAAATGTAATTTA
GTACTGTACccctgaaataaagaaaattgaatcGTGGGTAAATATAAGTA
GTTTGAATGAGAAAGAGTGCTTCTTGGCAATCTAAAATTGAAAACCTGTT
GTTTCATCTTAGAAGATGGTTTGTAAGGAATGTGGTGGGNTATGATACAA
TGAAATAGCTATCAAATTCTGTTTGTGACGCTTACTGTATGGAGGATTTC
AATTTCCCCTTGTAGGACTACTAGGTATAGATAATTGTATTTCTGTCCCA
AAATGTAATTTAGTACTGTACccctgaaataaagaaaattgaatcGTGGG
TAAATATAAGTAGTTTGAATGAGAAAGAGTGCTTCTTGGCAATCTAAAAT
TGAAAACCTGTTGTTTCATCTTAGAAGATGGTTTGCAAGGAATGTGGTGG
AGAAGtcatttttgaagaatttcatATTTGTTTGGATTGTGGTGTTATAC
AAAGTAAGTATATTACTTCTCTCTTATATTATATTCATTGGtattttttg
gttattttctgGTCATCTGGCTTTAGCTTTTAACTGGTGTATAATTATGG
TGATTTTGTAATTGTGTATTCAGGATCATTTCCTTTAATGAcctcttttt
aaaacaaaactttcTATGTTATTTGTTATCTTGTATATATATTTTAAACG
GCGGTAGTTTCAAGAAATCAACTCagtcttcttttttattttaggtaCAG
CATCTGAAATTGCTACTGCCGCCTTATCAGATTATTCTGAAACTCATCAA
CAAGACCGTTATGTGAAGCTgaacaagaaaattgatagCAAAGCCTTTCG
AGAATTCAAATCTAGGTTCTTATCGCTAACATACCATTTAAATTCTCCAG
TATCTGTTATCAATAAAGGGGATCAGCTATTACCAGATCTTTTCAATTTA
TGTCGACATTCTCGTCACATTATAAAGCATGCCTACATGTTGGCTTTGCT
GTTTTACACATACGAAAGCCATGGTGGATCGCCAATCTCATTGCAGACGT
ACCTTCAGAAAGTTCCTCCTCTTAGCCCTCATATCAATGTCACAAAAATC
TTTAACAAcgtgaaaacattttttaaatttccaaatcacTGTAGAAAAGA
GTTGGTTGAGATTAATGTAACACAACACATAAAACAATTATCTCAAATTA
TTCTAAAACCAGATGTTAGGGAAGAAATCTCTCTTGGTGATCTTGAGGAT
CTAGCAAATCGTTTGGCTAAACTGATTCGAAATAAATCATGGCACACAGG
GGTTCATTTTTCCGTTTTGAGTGAAATTGAGCATGTAAGCGTAGCATCTG
TAGTTATTGCAGCTCATTGTCAAATTTCACTACTTTCGAGGAAACGAGAA
CATTTTTCACGAAAAAAGCGCAGATCTTTTAGATACGAAACAATTAATTT
TGAAGaactttgtaaaaaatctgcatTCACTCTGCGTACATTAAACAAAT
GGATATCTGAAGTTCAAAATCATTTATATCACATATACAAATCAATGCCA
GCTTGTCCTGGAAGTATCAAAGGACATAAATTTGTTGGTCAAGTACTGGT
TCAAATTCTTGATTATCTAGATTTGGAGATTGATGACATTGATCCTGAAG
ATTTTGAGCGTGCAGATAAACGActgattttgaaaagaaattttttgttg
ggctgtttgattgattttcttATGAAAGAACAAGAAGGAAAAGGAAAGCT
TATAAAATCTGAAATGAAAGATCAATCGTGCCCTTTTCCCTATAAGAAAT
TTCATGAACATACCAAAAGCCTTGTATCATCTAGTCAAGATTTTTCAGAC
TGCGTCATTCATTTAAATGCTAAGagaaatattatttattttggtGAGGA
CCTTATTGCCCTACAGCACATGGAATTGATGTATGAGCTTTTCGAGAATG
GTGCATcatttgaagaattgaaaacagaaaaattgTCTAATTTAACAAGG
AAATATATTGAAAGTAAGGAAAGTTCTTCAGAACTTGATTTTGACCCAGA
GGAAGACGATAATTTAAATAAATACATTCGCACTAGAGAAGAAATTAAAT
TAGTATCATCAATGGGAAGCTGTTGAATACTTTTGTCACCATCTCCTATA
TCGTATTATGATTAGAAAAATGATAACGTAATTCAACTCTTGTTCAAATG
GATGTTGATATCATTTTGCTCATCTGTGGAAACCACGTGCTTTCAACGGA
AACtgatttaaaatctttttaacttTGACTTGAAGGATGCGGAATTTTGT
GGAtggaaaataatcttttttcaatgCGAAAAGTTGCATTTTTTAGAAAT
AGACCTATTCAGGCTGGACTGAGTTTTCTGACCCTAGAATTTGAAGGTGG
GACAGtttattttgacgttttatgAAAGTTCTGTTTACATTTGGATAATT
TTAAAATGGAAACAGGAAGAGGTAGTTCACGATTTTCAAGCTTAAGATAG
AATGAGAAAGACAAAATAGCTTCtgatttaaaaagaaagaaattcttCTA
AAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022811-exon-sc0000434-1491911889:47200..47338 | TCONS_00022811-exon-sc0000434-1491911889:47200..47338 | Clytia hemisphaerica | exon |
| TCONS_00022811-exon-sc0000434-1510915933:47200..47338 | TCONS_00022811-exon-sc0000434-1510915933:47200..47338 | Clytia hemisphaerica | exon |
| TCONS_00022811-exon-sc0000434-1575043694:47200..47338 | TCONS_00022811-exon-sc0000434-1575043694:47200..47338 | Clytia hemisphaerica | exon |
| TCONS_00022811-exon-sc0000434-1491911889:50674..50752 | TCONS_00022811-exon-sc0000434-1491911889:50674..50752 | Clytia hemisphaerica | exon |
| TCONS_00022811-exon-sc0000434-1510915933:50674..50752 | TCONS_00022811-exon-sc0000434-1510915933:50674..50752 | Clytia hemisphaerica | exon |
| TCONS_00022811-exon-sc0000434-1575043694:50674..50752 | TCONS_00022811-exon-sc0000434-1575043694:50674..50752 | Clytia hemisphaerica | exon |
| TCONS_00022811-exon-sc0000434-1491911889:50994..52805 | TCONS_00022811-exon-sc0000434-1491911889:50994..52805 | Clytia hemisphaerica | exon |
| TCONS_00022811-exon-sc0000434-1510915933:50994..52805 | TCONS_00022811-exon-sc0000434-1510915933:50994..52805 | Clytia hemisphaerica | exon |
| TCONS_00022811-exon-sc0000434-1575043694:50994..52805 | TCONS_00022811-exon-sc0000434-1575043694:50994..52805 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000434 | supercontig | sc0000434:47200..52805 + |
Blast
The following BLAST results are available for this feature:
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