XLOC_012820 (gene) - C. hemisphaerica

Overview
NameXLOC_012820
Unique NameXLOC_012820
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000434:43532..52805+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012820 ID=XLOC_012820|Name=XLOC_012820|organism=Clytia hemisphaerica|type=gene|length=9274bp|location=Sequence derived from alignment at sc0000434:43532..52805+ (Clytia hemisphaerica)
aacgaaagtgctACAAAAGATTTTTCTCCGAAATGGATTTGTATAGGACT
CAGACTCCTTTGGTGTTTGGGAGTAGATCCAAGCCCCAAACGTTTCTGGA
AGACTTCGGTGGCTGCTGGTAGCTGGAGATTTTCCATTTTGATTTTGTGG
TTAGTTTGgaggaaactttttttgctagGCACTTACTACCTGTGGTTGAG
AGATTGTCCAGAGGTATGAATGGTAAATTTTAATAGTGAATAGTTCAGTC
AGTCGTCAGTGTTTTCTACCACCAGTTTACCTGTCTATTCCAATAGCAAT
AACGCCTCTTTTGCATTGAATTTTTAGATTCCTCTCATTTAACACTTTGA
TTAATACTACACAACTTTATTACCATTgtgttggacggtgaaaaagaatg
cggctattatattttgatttttcccgacatgttttggactcggtccgttc
tcaagggaacTTTATTACCattgatatgaaaatatttattttaatagttt
ttaatttccaaattacaaatattTCTCCTATAATTCCTACAATTTTCTAC
CTAGCTTGGCATGTCATCGTCTCGTCCCAGCTCACaatttttaagtaaaa
tttgcgagattaggcttaattgtcttatgcaaatacataactagaactag
aactaaaACTAGAACTGTAGAACTCTTTCACTTTGATATTTAAGTCTACG
CCTACTTTTGTGCTTTCCACATTTTACCAGCGTCTTAGAACATCTTGcgc
taatgtttttaactttttattttattttatcctttatgtttaaaatcacg
aaaatgtacGTAATGTATATGTTATAATTCAATAGAACTTCAACTTCCCC
GAacagtctaagcttaaactTTTAAGTCTTATATTAGGATTTttaaacta
ggctagtcttacctcttttatctttccctttacaatggtgttacaacaat
acaatattGACAAGtcgacacaacacattgacaagtaatctctgagagaa
gtttatattgaaatctgcaacaaaaacgaaagtggtctcttctactgatt
gcttcctggcagttagtcacattagcgtcccgccgaaatgcgtatcaaag
attaatgctgcgaaagcacTGTATTGTTTAGGGGACCCGATCCATATTAA
TTTGACAatgcaaaacgtcaaattgacgtcaTCCTCTGGAACCCCCCCCA
CCCCCACAGATAACGTCAAGCGATACTGACAGCCCTTGAAATTCTAGTAA
AAGTAAGTCGGCAcgcaaaattttgccgacctaagCTTGTTTTTAGGTCG
GCAATGCCGATCTGAGCTatattttaggtcggcaaagttgtttaaaggct
acagcaatgtttgtttttttatttgagtgcGATATGGTTCTTATTAGAGA
CTTTCATTTTACAGTTACAGGATAAAAGAATAATAAAATAAGGTCGGCTT
TGCTGACCTAAAAGATAACTTATGGTCGGCTGCCGAGAGAATCAATGAAT
ATGGTCGGCAATGAACTGCCGACCATACGCACTCTTTGGTCGGCTTTTAG
CTCGGCActgccgaatgccgacctgaaaTTCGAGGGCTGTACTGATGTAT
ACCAAAAGTTgtagccatttttcatcaaagttttcccgtATCGTCGCAAA
GTCCGTACGTGTATGTGTTCCCGTAcgtgtatgtgttcttttaactaatg
acctttatttaaaaagaaattaaaagctccacttGGCGCTAGGTCCGTGC
CGTGCTTTAGGCGTACCACCTTCTTTGCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NATttcttataacgtcaaacctaacttttgaaaaccccccaccccctcat
aacgtcaatttgacgttttgcgttgtcaaatgaatatggacggctcccct
ttgactcgcaagcaaaaaaatgcaccgcaaaacttccaaaatgattcatg
aaaaaataacccaacgctttttaatgaaattaactttttccaaaataatg
agaaattgcctaaaatttgagccatggatgaaaaaatttgagccaagcca
accttgaaaactaatttgaagatcatcTTCCATtaaaaaagatctacggg
ggagacggaacccacctagatctgcGCACCGCCAGATtaataggctattt
cccggaaattttgcttGACCTCAAACACTGGCCAatttacatgtgcagaa
ttacttttactttagcgtgtaaacaaggccttaaaaatcaaagcactgtc
tcgggaattgaatgacaaaatttggttggttgatacaCATATCATTTTAA
GTTtacaagttttaattaattgtcttgggaacttgaacttgattcaggta
aacTCTCAtacttgttgttgcaaatacatcctgtactgtagatgactgat
gttgttttttctgaaagcttaatttcctagagACTAACTGCCtggcagta
tagacctaactcttcatacaaaaattatgggaaacacatatttggacttt
gtaccctatgttGCACGCAAGCACTAAGCTAAAGTCCCGCAAAAGATCAG
TTTTTtgcagtttgcaaaaaaacgccacatctttcaaattcagtatgtga
atacagaagtaaaaaatacaacttttctatttttccttttttttgcaaaa
gttctaggaatgaaaataaagggataacgATCaaaaagctagaatcgctt
cgcgtactcttcgcttgagaaaataaTTGACAGATTAAATTTTTCCCCCG
CGCGGAAGCTCGCGGGCAATCTgcaagcgttctcggctcaatccttggac
cgtgttaaaaatggtagactcagctgtgacagatcatttcaatggaagtt
gttggaatgtttacattatcatgatattgaaaataaaaacatagctgtca
acttcgcctCTCAAAAATGCAAGACAGCTCCAAGTCGGAAAAATTTCCCA
cggaaaatcaggaaattgAGGGAATTTCCCCGCAAAATCTGTtttatcag
aatttttttttcaggaaattggCGAAAATTTTGCCGTTCCgctttttgaa
aatctgatttctttttcaggaaatcagaaaatttttggagatgcgggaga
aaatcctgaaaatgcgaGAGATTTGGCTGAATTTCTTTCCTGCGAGAGAA
AACGTTGGCATGAGGGAATGTCCCACCCAATGTGGGAGAGTTGACACCTA
TGTAAAAGTAGTTGATAATAACTAATGAAATGAAAACAACTAAAGCTAAA
AAGGGCTGCAAAAAGAagtaccatcaactgctctaatgtgggacgattgg
ttgaaacatggaactgttgatatctggcctatATTTTCACCTacttttaa
atctctttgacaacaaatttgttttgataactccaccaagtttatcaatc
atacttttgtcataacatgtcacgataactttcactgattgcaagccctt
tttaacttttttgttttcattcaaaatgaccggacgccaattggagaatt
agagaacgcctgcctaaccgcctatcacctgatgggattaacaaataaca
agtgtgtaacttgccgcacgattgatgtcaaacgctccatcgttttgcca
ctaatatggtcttcttcgttccagatatttgcgtgtgttccactacggat
ttttttcatatttcaacaCAGCCTACTCGgtgtgaaagagaaattgtgta
ttttttaatacgtcgtttattaactcaaatcaaatgactttggaagtttg
gtgaaatggtggctgaattgccgtcccatgttttgtcagatagtcccaag
ttagagcagttgacggtagttaATGCAGAGCTAAAAGACCATCACAAGGA
TATAGTGATAGTGTATAGTAAAGTGAGAGGCTAAGGTGATAATGTAGACC
TAAAAGACTTGTGAtttgaaaaaacattgaaatatacattaaatttttta
gataatttatAAATAtgattacttaaaattaaatattataaTTCAGTATT
TTAAGTAtaagctaaaaagaaaatagtgAATAAATAGATTTTGCCTTGAT
TGCACAACCTGAGCTGAATAGAATATAGATTTAGTGAGAGTTTGTAAGAT
TAGCGGATGATGGTCTCTTAGTGCCTTGCACGAtaggcggctgtaaaatc
ccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGCCCTtatttttggcacccgtggcctctca
gtgccttgcacaacgggcggctgtaaaatcccacccttcatatatttgtt
tcaatctgtgatcctaaggcttacgttttttctcatcttcaatttactga
agaaagcgggaatttgatgcaagagttagattgtcaacaaagtgccataa
aaaatcattgaataagagaagaacttaaaatcttcaatattttcattttg
aagaattggtgcaaaaaagtgaaacatagaaaagtttcatttttcattgc
attaattgaaatgggggatttggaaaatttcctctgttttgttttttgtg
caaacccctgtaactatcaGTCAGTGGAAGTACTTCGATTTGTGAAGCGT
ATTTACGtcacatagaacaaaagaaaatagcaaaagaacaggaattaccc
atagccacCATTTTGCAACCATAGGGAATCGCAATTTTACGAAATGGGAA
ACAAAGAAACTTTCGTTTTCcgattgtctttttaatctgccatgaagtgt
tataagATTCAGAAAGACACATTCTCCTACAAAGAGGCTtaaaaaaaatg
accaaaaaatgtcattttatcttaacaattttgtaaactaTGTCACAACC
ACATAGCGCTGACTTTTGGttttatgacttgttctcactcgtttggtttc
cgttataaaaagaaagtcgttattgtgaactttgaacatgcttaaaatca
aggtacttccactaactgactatgggcaagcacctccttgctaagatgtt
ggcttgaaattgaaaatgaaattactgaaaatgaaagtaaaatcagccCG
AACTCAAAATCCGATAATCTTGATATACCAGTTTAAGTCTAAACTGCCTA
AAACTTGCCTTCCTCAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNccaaaaaaaaaaaaaaaaaaaaaattcacgtCACCTGCGGG
GCAAATCACACGCTCCTAATTTGTTTCATAAATTGGGCGGTGGGCAGTTT
GGCGGCGAACGTTCTATAATTCTCCAATCAGTGTCGGCCATTTTGAAGCA
gaacaaaaatactaaaaaagtcATGCTAGCactgaaattggccaaaacta
AAAAAGAATTTGCATTTGACACAGTGTCTATTTTTATTCCTTGTTGGTTG
CCAAGGGGTGTTATCCTTTCTCAGTTGGGAGAAACTAGTTGAAGACGTaa
aagaaattcattttgtttAGTATTCTTCGTAGCAGAAAGAGATAAACata
ttaaacttaaaatttgacttttcctCCGTCCGTGACATTCTGTACATGAC
AAGCACCTTCATTACCTTGGCTGAAatacaaaattcttaaaatttgtcaa
attctTTGGTTTTTAATCCTTAAAACCTTTGTCTGATCAtgttagaaatt
caaaaaacttgTTCAAACCAGttcaaaaccagttttctgaGATAGAATTT
TAGCCTGTTttggaaatttaaaattatgctTATTTCATTTGtgacagatt
ttttaatttggaaaaaaagtttcgtTGTTTTTATCCCCTTAGGGGGAGGT
ATTAAAACTTGCCATGAGAATTAGGGAAGATTCTTTCTGGTTTCTCTATG
ATACAATGAAATAGCTATCAAATTCTGTTTGTGACGCTTACTGTATGGAG
GATTTCAATTTCCCCTTGTAGGACTACTAGGTATAGATAATTGTATTTCT
GTCCCAAAATGTAATTTAGTACTGTACccctgaaataaagaaaattgaat
cGTGGGTAAATATAAGTAGTTTGAATGAGAAAGAGTGCTTCTTGGCAATC
TAAAATTGAAAACCTGTTGTTTCATCTTAGAAGATGGTTTGTAAGGAATG
TGGTGGGNTATGATACAATGAAATAGCTATCAAATTCTGTTTGTGACGCT
TACTGTATGGAGGATTTCAATTTCCCCTTGTAGGACTACTAGGTATAGAT
AATTGTATTTCTGTCCCAAAATGTAATTTAGTACTGTACccctgaaataa
agaaaattgaatcGTGGGTAAATATAAGTAGTTTGAATGAGAAAGAGTGC
TTCTTGGCAATCTAAAATTGAAAACCTGTTGTTTCATCTTAGAAGATGGT
TTGCAAGGAATGTGGTGGAGAAGtcatttttgaagaatttcatATTTGTT
TGGATTGTGGTGTTATACAAAGTAAGTATATTACTTCTCTCTTATATTAT
ATTCATTGGtattttttggttattttctgGTCATCTGGCTTTAGCTTTTA
ACTGGTGTATAATTATGGTGATTTTGTAATTGTGTATTCAGGATCATTTC
CTTTAATGAcctctttttaaaacaaaactttcTATGTTATTTGTTATCTT
GTATATATATTTTAAACGGCGGTAGTTTCAAGAAATCAACTCagtcttct
tttttattttaggtaCAGCATCTGAAATTGCTACTGCCGCCTTATCAGAT
TATTCTGAAACTCATCAACAAGACCGTTATGTGAAGCTgaacaagaaaat
tgatagCAAAGCCTTTCGAGAATTCAAATCTAGGTTCTTATCGCTAACAT
ACCATTTAAATTCTCCAGTATCTGTTATCAATAAAGGGGATCAGCTATTA
CCAGATCTTTTCAATTTATGTCGACATTCTCGTCACATTATAAAGCATGC
CTACATGTTGGCTTTGCTGTTTTACACATACGAAAGCCATGGTGGATCGC
CAATCTCATTGCAGACGTACCTTCAGAAAGTTCCTCCTCTTAGCCCTCAT
ATCAATGTCACAAAAATCTTTAACAAcgtgaaaacattttttaaatttcc
aaatcacTGTAGAAAAGAGTTGGTTGAGATTAATGTAACACAACACATAA
AACAATTATCTCAAATTATTCTAAAACCAGATGTTAGGGAAGAAATCTCT
CTTGGTGATCTTGAGGATCTAGCAAATCGTTTGGCTAAACTGATTCGAAA
TAAATCATGGCACACAGGGGTTCATTTTTCCGTTTTGAGTGAAATTGAGC
ATGTAAGCGTAGCATCTGTAGTTATTGCAGCTCATTGTCAAATTTCACTA
CTTTCGAGGAAACGAGAACATTTTTCACGAAAAAAGCGCAGATCTTTTAG
ATACGAAACAATTAATTTTGAAGaactttgtaaaaaatctgcatTCACTC
TGCGTACATTAAACAAATGGATATCTGAAGTTCAAAATCATTTATATCAC
ATATACAAATCAATGCCAGCTTGTCCTGGAAGTATCAAAGGACATAAATT
TGTTGGTCAAGTACTGGTTCAAATTCTTGATTATCTAGATTTGGAGATTG
ATGACATTGATCCTGAAGATTTTGAGCGTGCAGATAAACGActgattttg
aaaagaaattttttgttgggctgtttgattgattttcttATGAAAGAACA
AGAAGGAAAAGGAAAGCTTATAAAATCTGAAATGAAAGATCAATCGTGCC
CTTTTCCCTATAAGAAATTTCATGAACATACCAAAAGCCTTGTATCATCT
AGTCAAGATTTTTCAGACTGCGTCATTCATTTAAATGCTAAGagaaatat
tatttattttggtGAGGACCTTATTGCCCTACAGCACATGGAATTGATGT
ATGAGCTTTTCGAGAATGGTGCATcatttgaagaattgaaaacagaaaaa
ttgTCTAATTTAACAAGGAAATATATTGAAAGTAAGGAAAGTTCTTCAGA
ACTTGATTTTGACCCAGAGGAAGACGATAATTTAAATAAATACATTCGCA
CTAGAGAAGAAATTAAATTAGTATCATCAATGGGAAGCTGTTGAATACTT
TTGTCACCATCTCCTATATCGTATTATGATTAGAAAAATGATAACGTAAT
TCAACTCTTGTTCAAATGGATGTTGATATCATTTTGCTCATCTGTGGAAA
CCACGTGCTTTCAACGGAAACtgatttaaaatctttttaacttTGACTTG
AAGGATGCGGAATTTTGTGGAtggaaaataatcttttttcaatgCGAAAA
GTTGCATTTTTTAGAAATAGACCTATTCAGGCTGGACTGAGTTTTCTGAC
CCTAGAATTTGAAGGTGGGACAGtttattttgacgttttatgAAAGTTCT
GTTTACATTTGGATAATTTTAAAATGGAAACAGGAAGAGGTAGTTCACGA
TTTTCAAGCTTAAGATAGAATGAGAAAGACAAAATAGCTTCtgatttaaa
aagaaagaaattcttCTAAAAAAT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022809TCONS_00022809Clytia hemisphaericatranscript
TCONS_00022810TCONS_00022810Clytia hemisphaericatranscript
TCONS_00022811TCONS_00022811Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00022809-proteinTCONS_00022809-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000434supercontigsc0000434:43532..52805 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.42	10.37	6.29	6.74	3.52	2.35	5.76	6.17	3.47	4.22	6.16	3.98	4.9	3.72	4.11	4.52	4.83	4.49	6.15	3.56	6.45	5.95	8.47	8.95	5.45	8.73	4.05	3.52	5.67	6.5