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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022695 ID=TCONS_00022695|Name=TCONS_00022695|organism=Clytia hemisphaerica|type=transcript|length=1885bp
CAAAATCTAAAAGTTATGCCAATGTAAAAACCGCTGTCAATGATCCTCTT
ACAGTAgtaaagctgaaattttttgcTTACGTTGCTGGTATACTCGAACC
ATTCTTAAAGATATACCAAACTGACAAACCCATGATCCCTTTTCtctatt
ttgatttgaaatcaaTCGTTTTAACGCTAATGGTAATGAAATTGTTTATA
AAGCCAAAGTGTGTATCTGGGGCAAAAACGGGGATGCAACTGTGTGGAAT
TGACCTGGAAAATGAATCGAACCAAATTAATCTGAAAGATATTGGTCTTG
GGTTTGCTGCTGAAGAAGAACTTGAAAAGCTTAAAACTGCAGATCTTGTA
ACGGCGACTAAagaatcatcattttttaaagagGTCCGGACTTTCCTTAT
CTCTCTCATCAAAAAGTTGTTAACTAAAACGCCTCTCACATCAGTAGTCG
TCAGGTTTGCTTCAATTTTTGATCCATCTATCATCATTTCGACACCAACG
GATaagattgaaaaaaacttgaagAAACTGCTTCATCATcttttgagtct
gaaaattgTAACTGCTAAAAATTCGgataaaattcatcaagagtTTGTTC
CATTCCACAAAGATGTGAAAGCACAACGTGACAAGTTCTAAGCCTTCTCA
AAATCAAAGGATTCTCTTGACACGTTTTATTTTGGCTTATTTCCAAAATT
AAATGACAACTTTCCAAACCTGGCATTTCTCCTGAAACTCATCTTTGTTT
TAAGGTTCGTAAACTATTTACTTCAATACTTTGCTGTCTTACTTCATAAC
AGCTGACGTCTAGTTTGATGTTGAAACTATTCGATCAGCTCCTGTTTTAG
CATCAAATTGAAAGTCGCACTCTCAAATTTCTCTACGTAACTCTATTAAG
CATCGCCATACTTTTCAGACATATTATTAATTCATAACCATCtgatttcg
ataaaaatttctaCATGACAAATGTTGAATTATTTTACATCTAACAGTTT
AAACTCTTTTCCTCCAGCTATGGCCAAGCCTCTGTTGAAAGAGGTTTCAG
CTTGCGAAATGATTCTTTGAAAGATAACATCTCTGAGCTATCCATTGATT
CTAAGCATGTCATCGTTGACCATATGTTATCAAATGATATTAAGCCCGAG
ACTATGGATATTAACACTCCTCTCATAGTAGCTTTCAAATCTGGCCGCGC
AAAATACGAAGAAAGTAAGAAACAAGCTAAGAAAGAGAAAATCTTGACTG
AACAAGAAAATCGAAAGAGACAGCTATGCATCGAGattaatgaaataaaa
ttgaagatagcatcattgaaaaaaaatgtgtcCTATTTAGACGATGAGTT
TACTAACTCCATATTGCAAGCTGAGGACCAAAATGTAAATGAACAGTCAC
TAATTATTTCCAAAGCAACAGCATTGAagagaaaaagtatttctaAAAGT
GAAGAGGCTGAACAATTAGAGAATAAGGTGAAAATGTTAGAAGCCAAGAG
AAAGAAACTCTGAAAGAAACGATTTATGAAGTTACATACATAAATTCATG
gttgatattgatttttccATCAGTTATTATTCATACCTAACATTTGTAGA
CTTTTATTTTTACCTTAGTTAGGATTaccttttgtttgaaaattatatAC
GCATAGTTGGTATTGATTTTTCCGTCAGTTCATTGCTTCAAAACTTAAAC
TTGAGtccaattttataaaaaatgaactACCGATGGATTCACAAGTGGTT
CTTCTTCAGGTCTAGAAAGCCTAGGTATATAccaaaatatgaatttttat
gcattcttttttagttttgttttcaagacAGTGTAAAATTTTCAAGGTCT
AGGGTTTAAATACCTTAAATATGAACGTTTTGGGA Run BLAST on NCBI transcript from alignment at sc0000431:599..2483+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022695 ID=TCONS_00022695|Name=TCONS_00022695|organism=Clytia hemisphaerica|type=transcript|length=1885bp|location=Sequence derived from alignment at sc0000431:599..2483+ (Clytia hemisphaerica)
CAAAATCTAAAAGTTATGCCAATGTAAAAACCGCTGTCAATGATCCTCTT
ACAGTAgtaaagctgaaattttttgcTTACGTTGCTGGTATACTCGAACC
ATTCTTAAAGATATACCAAACTGACAAACCCATGATCCCTTTTCtctatt
ttgatttgaaatcaaTCGTTTTAACGCTAATGGTAATGAAATTGTTTATA
AAGCCAAAGTGTGTATCTGGGGCAAAAACGGGGATGCAACTGTGTGGAAT
TGACCTGGAAAATGAATCGAACCAAATTAATCTGAAAGATATTGGTCTTG
GGTTTGCTGCTGAAGAAGAACTTGAAAAGCTTAAAACTGCAGATCTTGTA
ACGGCGACTAAagaatcatcattttttaaagagGTCCGGACTTTCCTTAT
CTCTCTCATCAAAAAGTTGTTAACTAAAACGCCTCTCACATCAGTAGTCG
TCAGGTTTGCTTCAATTTTTGATCCATCTATCATCATTTCGACACCAACG
GATaagattgaaaaaaacttgaagAAACTGCTTCATCATcttttgagtct
gaaaattgTAACTGCTAAAAATTCGgataaaattcatcaagagtTTGTTC
CATTCCACAAAGATGTGAAAGCACAACGTGACAAGTTCTAAGCCTTCTCA
AAATCAAAGGATTCTCTTGACACGTTTTATTTTGGCTTATTTCCAAAATT
AAATGACAACTTTCCAAACCTGGCATTTCTCCTGAAACTCATCTTTGTTT
TAAGGTTCGTAAACTATTTACTTCAATACTTTGCTGTCTTACTTCATAAC
AGCTGACGTCTAGTTTGATGTTGAAACTATTCGATCAGCTCCTGTTTTAG
CATCAAATTGAAAGTCGCACTCTCAAATTTCTCTACGTAACTCTATTAAG
CATCGCCATACTTTTCAGACATATTATTAATTCATAACCATCtgatttcg
ataaaaatttctaCATGACAAATGTTGAATTATTTTACATCTAACAGTTT
AAACTCTTTTCCTCCAGCTATGGCCAAGCCTCTGTTGAAAGAGGTTTCAG
CTTGCGAAATGATTCTTTGAAAGATAACATCTCTGAGCTATCCATTGATT
CTAAGCATGTCATCGTTGACCATATGTTATCAAATGATATTAAGCCCGAG
ACTATGGATATTAACACTCCTCTCATAGTAGCTTTCAAATCTGGCCGCGC
AAAATACGAAGAAAGTAAGAAACAAGCTAAGAAAGAGAAAATCTTGACTG
AACAAGAAAATCGAAAGAGACAGCTATGCATCGAGattaatgaaataaaa
ttgaagatagcatcattgaaaaaaaatgtgtcCTATTTAGACGATGAGTT
TACTAACTCCATATTGCAAGCTGAGGACCAAAATGTAAATGAACAGTCAC
TAATTATTTCCAAAGCAACAGCATTGAagagaaaaagtatttctaAAAGT
GAAGAGGCTGAACAATTAGAGAATAAGGTGAAAATGTTAGAAGCCAAGAG
AAAGAAACTCTGAAAGAAACGATTTATGAAGTTACATACATAAATTCATG
gttgatattgatttttccATCAGTTATTATTCATACCTAACATTTGTAGA
CTTTTATTTTTACCTTAGTTAGGATTaccttttgtttgaaaattatatAC
GCATAGTTGGTATTGATTTTTCCGTCAGTTCATTGCTTCAAAACTTAAAC
TTGAGtccaattttataaaaaatgaactACCGATGGATTCACAAGTGGTT
CTTCTTCAGGTCTAGAAAGCCTAGGTATATAccaaaatatgaatttttat
gcattcttttttagttttgttttcaagacAGTGTAAAATTTTCAAGGTCT
AGGGTTTAAATACCTTAAATATGAACGTTTTGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022695-exon-sc0000431-1491911889:599..2483 | TCONS_00022695-exon-sc0000431-1491911889:599..2483 | Clytia hemisphaerica | exon |
| TCONS_00022695-exon-sc0000431-1510915933:599..2483 | TCONS_00022695-exon-sc0000431-1510915933:599..2483 | Clytia hemisphaerica | exon |
| TCONS_00022695-exon-sc0000431-1575043694:599..2483 | TCONS_00022695-exon-sc0000431-1575043694:599..2483 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000431 | supercontig | sc0000431:599..2483 + |
Blast
The following BLAST results are available for this feature:
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