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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022688 ID=TCONS_00022688|Name=TCONS_00022688|organism=Clytia hemisphaerica|type=transcript|length=1239bp
attttaagcATGGGAAGAATTAACAAATTTTCATGGTTGGTTTTTGCTGG
TTGCTTCGTCATGACGTTCCTGTATTCCTACAATGTCACATATTTTGCTC
CGAAAATGGAAAATAtagaattattgaaaaaagaaataggtTATGTTAAA
AATCGTTTATCTGCAGTTGATAACGAACTAAGACAGAAACTGAAAGATCT
AAAAACAGAATTTTATGAATTACACGCTAATCAGACTAGCAGACTAACGC
GTATGGTGCAAACTATTGAAAAGTTAAAAGCTCGTATAAAATTGAACACG
TataaaaaagatgtaaaaagacCTAACGTAGAGCTTATAAACCAGAAAGA
TATCAAAGCCCAGGACGCACAAATAATGGTTTTAGTGACATCACATATTG
GTCATAAAAATCGGCGAGATTCTATAAGAATGAACTGGGGAGATTCTAGt
aaattttctaaaagattGCAGCAGAACTATGGCAATAAAACGACATATAA
AGTATATTTTATGACCGGTTATCTACAAAGTGAAATGGAGAATGCGGGAA
ATGAATCTGCTGTTCACAAAGATATGCTTATAATGAACCGTGCTGAACAC
TATTTTGATTTGTCAAGAAGAGTCATGTTTGGGtttttatggtcttttga
aaATTGCCAGTATGATTATCTGTTGAAAGCTGATGACGATGTTTTTATAC
ACATaccaaatttattcaaattgatACACCAAGACCCTTTCGTTTTAAAA
CATAAAGATAGACTTTATGCTGGAAATATGTTCATGAATTTAGGGCCTca
tcgaaatgaaaaatcaaaatggcatGTACCGAAAGAGGAGTGGGAACCAA
ACAAATACCCTCCTTTCGCACCTGGGATGGGTGTTGTTTTATCAAGACAT
GTAGTTGGTAAAATAATTcctcattttgattggttaaaaccGTTTAGGCT
GGATGATGTTTATATAGGAATGTTAGTATATAAGGCTAATGTGACTGGAA
TGGGAATTCGAAAACAAGTTGGAGCTGAATTTTATGATAATATTAATAAC
AGAAAATTCTGTGCTTTTCCTTCGACCAGAATAATTGCTTTCCACAAAGT
TTTAGAGAATAAATGTATGACACATTTAACAAATAGGAGTAGACAATGAA
AGACTGACGTTACAGCTGTgtatttaagtcaattttaacTTTCTGTAAAC
GTTGTGTACTTTGTTAgaaattacacccctgtgtcaaag Run BLAST on NCBI protein sequence of TCONS_00022688-protein >TCONS_00022688-protein ID=TCONS_00022688-protein|Name=TCONS_00022688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
ILSMGRINKFSWLVFAGCFVMTFLYSYNVTYFAPKMENIELLKKEIGYVK
NRLSAVDNELRQKLKDLKTEFYELHANQTSRLTRMVQTIEKLKARIKLNT
YKKDVKRPNVELINQKDIKAQDAQIMVLVTSHIGHKNRRDSIRMNWGDSS
KFSKRLQQNYGNKTTYKVYFMTGYLQSEMENAGNESAVHKDMLIMNRAEH
YFDLSRRVMFGFLWSFENCQYDYLLKADDDVFIHIPNLFKLIHQDPFVLK
HKDRLYAGNMFMNLGPHRNEKSKWHVPKEEWEPNKYPPFAPGMGVVLSRH
VVGKIIPHFDWLKPFRLDDVYIGMLVYKANVTGMGIRKQVGAEFYDNINN
RKFCAFPSTRIIAFHKVLENKCMTHLTNRSRQ Run BLAST on NCBI transcript from alignment at sc0000430:222376..223614 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022688 ID=TCONS_00022688|Name=TCONS_00022688|organism=Clytia hemisphaerica|type=transcript|length=1239bp|location=Sequence derived from alignment at sc0000430:222376..223614 (Clytia hemisphaerica)
ctttgacacaggggtgtaatttcTAACAAAGTACACAACGTTTACAGAAA
gttaaaattgacttaaatacACAGCTGTAACGTCAGTCTTTCATTGTCTA
CTCCTATTTGTTAAATGTGTCATACATTTATTCTCTAAAACTTTGTGGAA
AGCAATTATTCTGGTCGAAGGAAAAGCACAGAATTTTCTGTTATTAATAT
TATCATAAAATTCAGCTCCAACTTGTTTTCGAATTCCCATTCCAGTCACA
TTAGCCTTATATACTAACATTCCTATATAAACATCATCCAGCCTAAACgg
ttttaaccaatcaaaatgaggAATTATTTTACCAACTACATGTCTTGATA
AAACAACACCCATCCCAGGTGCGAAAGGAGGGTATTTGTTTGGTTCCCAC
TCCTCTTTCGGTACatgccattttgatttttcatttcgatgAGGCCCTAA
ATTCATGAACATATTTCCAGCATAAAGTCTATCTTTATGTTTTAAAACGA
AAGGGTCTTGGTGTatcaatttgaataaatttggtATGTGTATAAAAACA
TCGTCATCAGCTTTCAACAGATAATCATACTGGCAATtttcaaaagacca
taaaaaCCCAAACATGACTCTTCTTGACAAATCAAAATAGTGTTCAGCAC
GGTTCATTATAAGCATATCTTTGTGAACAGCAGATTCATTTCCCGCATTC
TCCATTTCACTTTGTAGATAACCGGTCATAAAATATACTTTATATGTCGT
TTTATTGCCATAGTTCTGCTGCaatcttttagaaaatttaCTAGAATCTC
CCCAGTTCATTCTTATAGAATCTCGCCGATTTTTATGACCAATATGTGAT
GTCACTAAAACCATTATTTGTGCGTCCTGGGCTTTGATATCTTTCTGGTT
TATAAGCTCTACGTTAGgtctttttacatcttttttatACGTGTTCAATT
TTATACGAGCTTTTAACTTTTCAATAGTTTGCACCATACGCGTTAGTCTG
CTAGTCTGATTAGCGTGTAATTCATAAAATTCTGTTTTTAGATCTTTCAG
TTTCTGTCTTAGTTCGTTATCAACTGCAGATAAACGATTTTTAACATAac
ctatttcttttttcaataattctaTATTTTCCATTTTCGGAGCAAAATAT
GTGACATTGTAGGAATACAGGAACGTCATGACGAAGCAACCAGCAAAAAC
CAACCATGAAAATTTGTTAATTCTTCCCATgcttaaaat Coding sequence (CDS) from alignment at sc0000430:222376..223614 >TCONS_00022688 ID=TCONS_00022688|Name=TCONS_00022688|organism=Clytia hemisphaerica|type=CDS|length=1149bp|location=Sequence derived from alignment at sc0000430:222376..223614 (Clytia hemisphaerica)
TCATTGTCTACTCCTATTTGTTAAATGTGTCATACATTTATTCTCTAAAA
CTTTGTGGAAAGCAATTATTCTGGTCGAAGGAAAAGCACAGAATTTTCTG
TTATTAATATTATCATAAAATTCAGCTCCAACTTGTTTTCGAATTCCCAT
TCCAGTCACATTAGCCTTATATACTAACATTCCTATATAAACATCATCCA
GCCTAAACggttttaaccaatcaaaatgaggAATTATTTTACCAACTACA
TGTCTTGATAAAACAACACCCATCCCAGGTGCGAAAGGAGGGTATTTGTT
TGGTTCCCACTCCTCTTTCGGTACatgccattttgatttttcatttcgat
gAGGCCCTAAATTCATGAACATATTTCCAGCATAAAGTCTATCTTTATGT
TTTAAAACGAAAGGGTCTTGGTGTatcaatttgaataaatttggtATGTG
TATAAAAACATCGTCATCAGCTTTCAACAGATAATCATACTGGCAATttt
caaaagaccataaaaaCCCAAACATGACTCTTCTTGACAAATCAAAATAG
TGTTCAGCACGGTTCATTATAAGCATATCTTTGTGAACAGCAGATTCATT
TCCCGCATTCTCCATTTCACTTTGTAGATAACCGGTCATAAAATATACTT
TATATGTCGTTTTATTGCCATAGTTCTGCTGCaatcttttagaaaattta
CTAGAATCTCCCCAGTTCATTCTTATAGAATCTCGCCGATTTTTATGACC
AATATGTGATGTCACTAAAACCATTATTTGTGCGTCCTGGGCTTTGATAT
CTTTCTGGTTTATAAGCTCTACGTTAGgtctttttacatcttttttatAC
GTGTTCAATTTTATACGAGCTTTTAACTTTTCAATAGTTTGCACCATACG
CGTTAGTCTGCTAGTCTGATTAGCGTGTAATTCATAAAATTCTGTTTTTA
GATCTTTCAGTTTCTGTCTTAGTTCGTTATCAACTGCAGATAAACGATTT
TTAACATAacctatttcttttttcaataattctaTATTTTCCATTTTCGG
AGCAAAATATGTGACATTGTAGGAATACAGGAACGTCATGACGAAGCAAC
CAGCAAAAACCAACCATGAAAATTTGTTAATTCTTCCCATgcttaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022688-exon-sc0000430-1491911889:222376..223614 | TCONS_00022688-exon-sc0000430-1491911889:222376..223614 | Clytia hemisphaerica | exon |
| TCONS_00022688-exon-sc0000430-1510915933:222376..223614 | TCONS_00022688-exon-sc0000430-1510915933:222376..223614 | Clytia hemisphaerica | exon |
| TCONS_00022688-exon-sc0000430-1575043694:222376..223614 | TCONS_00022688-exon-sc0000430-1575043694:222376..223614 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000430 | supercontig | sc0000430:222376..223614 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
BLAST of TCONS_00022688 vs. Swiss-Prot (Human)
Match: B3GN2 (N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2 OS=Homo sapiens GN=B3GNT2 PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 2.729e-23 Identity = 78/258 (30.23%), Postives = 129/258 (50.00%), Query Frame = 1
Query: 334 LINQKDIKAQDAQIMVLVTSHIGHKNRRDSIRMNWGDSSKFSKRLQQNYGNKTTYKVYFMTGYLQSEMENAGN-------ESAVHKDMLIMNRAEHYFDLSRRVMFGFLWSFENC-QYDYLLKADDDVFI---HIPNLFKLIHQDPFVLKHKDRLYAGNMFMNLGPHRNEKSKWHVPKEEWEPNKYPPFAPGMGVVLSRHVVGKIIPHFDWLKPFRLDDVYIGMLVYKANVTGMGIRKQVGAEFYD--NINNRKFCAF 1068
LI+Q D A+ +++ + S H RR +IR +WG S N GN+T +V F+ G E +N + ES H+D+L+ N + +F+LS + + W +C +++ K DDDVF+ HI N + + K KD L+ G++ N GPHR++K K+++P+ + YPP+A G G + S H+ ++ D + + +DDVY GM + K G+ K G +D N C++
Sbjct: 131 LIDQPDKCAKKPFLLLAIKSLTPHFARRQAIRESWGQES--------NAGNQTVVRV-FLLGQTPPE-DNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFVFKGDDDVFVNTHHILNYLNSLSKT----KAKD-LFIGDVIHNAGPHRDKKLKYYIPEVVYS-GLYPPYAGGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQK---LGLVPEKHKGFRTFDIEEKNKNNICSY 369
The following BLAST results are available for this feature:
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