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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022683 ID=TCONS_00022683|Name=TCONS_00022683|organism=Clytia hemisphaerica|type=transcript|length=1390bp
NNTGATTGCCGCTGGATATGCTGGGATGTTGGCCAAGGCGATTGCCGCTG
GGGTGGTGTTTCGAGAGAGTATACTTAGAAATAGCTGTCTTGAAGACGGA
ACTGATGACCTACATGTTAGTTTGGTCTAACTAAAACTTATCACACCTGA
CCACTTAACTTATTCTCAAATATTGCATCATTGCATGTTcactttgacat
tttgaaaaatgttcttgtGTAAGGAGAGATAGATATTTCAAAGTACTcgt
aaaaaaaacaataacacatgTTTGAAACTTCAATTCAGCTGGGTGGATTT
TATTATGAGATTCGACAAGAGGATAAGAATTCGTGGCTCAGGCAGAGCTC
AAATACTCTCCTTTACATCTAATTTACAATATAATCTTGCACTGAGGCCC
TCTTTTGGTTTGGATTAAGGTCATTAAGAGGTTAAACTAGACTTATAATA
TACTATTATAGTTATTTGATTATATATTAGCTGGTTTCTGATTTATATTT
ATAACTAACTATATTGACTGAGTGTATAGCATAGTCATGAATTTCTATCT
AGAGGCCAGAATGAAGAGGCAGTTAACATAAAGGGTCAACATCAAGTAAT
CAAAATTTATACAGACAAGTAGTGTATCTAGAGTATTTGTTGATCAActa
gatttttcttcttcagaagAGGCTGGTTTAAATGTACAGAAGGCGAGTCA
AGGCAGAAGATTGATAAAAGCCAATACAACTCGAGTAGAATAATATATGG
AAAACCAGGAAATcagtgtttttgttttaaagggtGACAATGTAGTTGAA
TAAAGCTTGGGCTATTCCAGACCAAAGTATACACAGAACATTGACCAACA
TTAACAGGCATAAAATGAGAGTTTAAGGGAAAGTTCCGTTTATTTACGCA
TCCtgcaaaatcagttttttttctgCAGTAAAATTGAATCTTGGAAAATC
ATGAAATTAGTTCTTGGTTAATTCAAAGGCTAGGCCAGTGGCACTCCAGA
TGTTACAATAAATACGAGAGCTTTGTGAGTGTGTTATGTGTGTTTATGTC
TCAGGTCGGGTCCAACTCAAGGGGAGTCACTTCTTTGAGGGAATTTCGAA
CGGCGGTTCGGTTCTCTCAGAAACGGGTTTCAACCCTAAAAGTGTCTCAG
GTCGGGTCCTACTCAAGGGGAGTCACTTCTTTGAGGGAATTTCAGACGGC
GGTTTGGTTCTCTCAGAAACCTCGACGGCGGTCGGGTTTCAACCCTAAAA
GTGTCTCAGGTCGGGTCCTACTCAAGGGGAGTCACTTCTTTGAGGGATTT
TCGAACGGCGGTTCGGTtcattttgcatacttttttcACTTCCCCAAAAG
CTTCTGACTTCGTCCcttgtgttttttgtttacatcacgC Run BLAST on NCBI transcript from alignment at sc0000430:177486..178875 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022683 ID=TCONS_00022683|Name=TCONS_00022683|organism=Clytia hemisphaerica|type=transcript|length=1390bp|location=Sequence derived from alignment at sc0000430:177486..178875 (Clytia hemisphaerica)
GcgtgatgtaaacaaaaaacacaagGGACGAAGTCAGAAGCTTTTGGGGA
AGTgaaaaaagtatgcaaaatgaACCGAACCGCCGTTCGAAAATCCCTCA
AAGAAGTGACTCCCCTTGAGTAGGACCCGACCTGAGACACTTTTAGGGTT
GAAACCCGACCGCCGTCGAGGTTTCTGAGAGAACCAAACCGCCGTCTGAA
ATTCCCTCAAAGAAGTGACTCCCCTTGAGTAGGACCCGACCTGAGACACT
TTTAGGGTTGAAACCCGTTTCTGAGAGAACCGAACCGCCGTTCGAAATTC
CCTCAAAGAAGTGACTCCCCTTGAGTTGGACCCGACCTGAGACATAAACA
CACATAACACACTCACAAAGCTCTCGTATTTATTGTAACATCTGGAGTGC
CACTGGCCTAGCCTTTGAATTAACCAAGAACTAATTTCATGATTTTCCAA
GATTCAATTTTACTGcagaaaaaaaactgattttgcaGGATGCGTAAATA
AACGGAACTTTCCCTTAAACTCTCATTTTATGCCTGTTAATGTTGGTCAA
TGTTCTGTGTATACTTTGGTCTGGAATAGCCCAAGCTTTATTCAACTACA
TTGTCaccctttaaaacaaaaacactgATTTCCTGGTTTTCCATATATTA
TTCTACTCGAGTTGTATTGGCTTTTATCAATCTTCTGCCTTGACTCGCCT
TCTGTACATTTAAACCAGCCTcttctgaagaagaaaaatctagTTGATCA
ACAAATACTCTAGATACACTACTTGTCTGTATAAATTTTGATTACTTGAT
GTTGACCCTTTATGTTAACTGCCTCTTCATTCTGGCCTCTAGATAGAAAT
TCATGACTATGCTATACACTCAGTCAATATAGTTAGTTATAAATATAAAT
CAGAAACCAGCTAATATATAATCAAATAACTATAATAGTATATTATAAGT
CTAGTTTAACCTCTTAATGACCTTAATCCAAACCAAAAGAGGGCCTCAGT
GCAAGATTATATTGTAAATTAGATGTAAAGGAGAGTATTTGAGCTCTGCC
TGAGCCACGAATTCTTATCCTCTTGTCGAATCTCATAATAAAATCCACCC
AGCTGAATTGAAGTTTCAAAcatgtgttattgttttttttacgAGTACTT
TGAAATATCTATCTCTCCTTACacaagaacatttttcaaaatgtcaaagt
gAACATGCAATGATGCAATATTTGAGAATAAGTTAAGTGGTCAGGTGTGA
TAAGTTTTAGTTAGACCAAACTAACATGTAGGTCATCAGTTCCGTCTTCA
AGACAGCTATTTCTAAGTATACTCTCTCGAAACACCACCCCAGCGGCAAT
CGCCTTGGCCAACATCCCAGCATATCCAGCGGCAATCANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022683-exon-sc0000430-1491911889:177486..178875 | TCONS_00022683-exon-sc0000430-1491911889:177486..178875 | Clytia hemisphaerica | exon |
| TCONS_00022683-exon-sc0000430-1510915933:177486..178875 | TCONS_00022683-exon-sc0000430-1510915933:177486..178875 | Clytia hemisphaerica | exon |
| TCONS_00022683-exon-sc0000430-1575043694:177486..178875 | TCONS_00022683-exon-sc0000430-1575043694:177486..178875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000430 | supercontig | sc0000430:177486..178875 . |
Blast
The following BLAST results are available for this feature:
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