TCONS_00022681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022681
Unique NameTCONS_00022681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022681 ID=TCONS_00022681|Name=TCONS_00022681|organism=Clytia hemisphaerica|type=transcript|length=337bp
ACATGAATCGAAGTCCCTTTTTATTAAAAGAGCCCATGGATGAGATCTCT
GATTCACACATCATTTAATTTTCAGGCGGTCAAGTGCTGTAAAATAGGCC
TATTTCGCGCCTCTTTTATTTTCGCGCTCTTTTTCTGTGCGAAAATAAAA
GACGCGCCAAAATTAACTCTCGCAATAAACTTTCGGAATAAAATTTCACA
AAACATCACAAAATGGATCATAGACATTATTTTCAATGGATCAAAGAAGA
ATTTCACACGAATTTTATACCCTGATTAACCCAAAATGTCCCACTCACGG
TTTATTTCTATGAAAAAAACATGTCTGTTGATACTCC
Run BLAST on NCBI

transcript from alignment at sc0000430:167381..167717

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022681 ID=TCONS_00022681|Name=TCONS_00022681|organism=Clytia hemisphaerica|type=transcript|length=337bp|location=Sequence derived from alignment at sc0000430:167381..167717 (Clytia hemisphaerica)
GGAGTATCAACAGACATGTTTTTTTCATAGAAATAAACCGTGAGTGGGAC
ATTTTGGGTTAATCAGGGTATAAAATTCGTGTGAAATTCTTCTTTGATCC
ATTGAAAATAATGTCTATGATCCATTTTGTGATGTTTTGTGAAATTTTAT
TCCGAAAGTTTATTGCGAGAGTTAATTTTGGCGCGTCTTTTATTTTCGCA
CAGAAAAAGAGCGCGAAAATAAAAGAGGCGCGAAATAGGCCTATTTTACA
GCACTTGACCGCCTGAAAATTAAATGATGTGTGAATCAGAGATCTCATCC
ATGGGCTCTTTTAATAAAAAGGGACTTCGATTCATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012746XLOC_012746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022681-exon-sc0000430-1491911889:167381..167717TCONS_00022681-exon-sc0000430-1491911889:167381..167717Clytia hemisphaericaexon
TCONS_00022681-exon-sc0000430-1510915933:167381..167717TCONS_00022681-exon-sc0000430-1510915933:167381..167717Clytia hemisphaericaexon
TCONS_00022681-exon-sc0000430-1575043694:167381..167717TCONS_00022681-exon-sc0000430-1575043694:167381..167717Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000430supercontigsc0000430:167381..167717 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.38583	1.62169	0.627645	0	0.373775	0.590724	0	0.667205	1.40138	0	1.96565	0.553775	0	2.48864	0	0	0.624204	1.49284	0.883903	0	1.07192	0.392135	0	1.73353	0	0.265585	1.5202	0	0	0.31343
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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