TCONS_00022678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022678
Unique NameTCONS_00022678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length866

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022678 ID=TCONS_00022678|Name=TCONS_00022678|organism=Clytia hemisphaerica|type=transcript|length=866bp
ACTGGTTGATGGATAGTTCTTTCTTGGCTTCGACTATCTCCTGATTGTCC
AATGTTATCTCATTTTCACGTTTTANATGTTGTTACGTGAACATCAAACT
GGTTGATGGATAGTTCTTTCTTGGCTTCGACTATCTCCTGATTGTCCAAT
GTTATCTCATTTGCACGTTTTGCTGGAAATTCAGAGATAGGTAGTTACAT
CCAAGGTTGACCGTTTATCCATTGCGAGTGTTGATCAACGTCACTGATTG
TTGCACCCTTTCTGGTGCCAACATCAGTAACCATCTGTTTCGATCCAACA
TGGAGCCACCGATCCTTGTGCGTGAAGCGATGAATCTCAATGAGTCTGCT
TCTAACCCATTGTTTCAACATCTTTTGCACGTTTGAAATCCAATGAAGAG
ATATCTGGCTATCTGTGAACTTTAAGGATGATTTAAATAAGGATCGGAAT
GAGCGGCGAACAATCTCTCCTGTGTGTGCATTGATTAGTGATGCAAGTAG
TTCTGCACGTTGAAGAGTCAGATCCTTTGGAACCATCCTTGATTTGGCAA
AAACCAATTGAGAAGAGTATGATCCATCTTTACGAAGAAAACGACCATAG
ATGCAGATGCACATTGTTGTATTGCTAGCATCACCAAAGTCCAAGGTCTC
CACATCGAGTGAGACAGCATCAGCAGGTACAACAAGTCATTGGAATCTTA
ACTGGTCGATTTTTGTGATTGTGTCAAAATGAGACAGTCAGATTGGTCTT
AGCTCATCTGGTATTGGGTCATCCCAGTCAAGCTGTCTATCGCACAAGTC
TCGTAGATCGATCTTCATGGCGGCCACCAATGGTGCGATTTTACCAAGAA
TGTAGAAAATTTCGGC
Run BLAST on NCBI

protein sequence of TCONS_00022678-protein

>TCONS_00022678-protein ID=TCONS_00022678-protein|Name=TCONS_00022678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MCICIYGRFLRKDGSYSSQLVFAKSRMVPKDLTLQRAELLASLINAHTGE
IVRRSFRSLFKSSLKFTDSQISLHWISNVQKMLKQWVRSRLIEIHRFTHK
DRWLHVGSKQMVTDVGTRKGATISDVDQHSQWINGQPWM
Run BLAST on NCBI

transcript from alignment at sc0000430:149407..150272

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022678 ID=TCONS_00022678|Name=TCONS_00022678|organism=Clytia hemisphaerica|type=transcript|length=866bp|location=Sequence derived from alignment at sc0000430:149407..150272 (Clytia hemisphaerica)
GCCGAAATTTTCTACATTCTTGGTAAAATCGCACCATTGGTGGCCGCCAT
GAAGATCGATCTACGAGACTTGTGCGATAGACAGCTTGACTGGGATGACC
CAATACCAGATGAGCTAAGACCAATCTGACTGTCTCATTTTGACACAATC
ACAAAAATCGACCAGTTAAGATTCCAATGACTTGTTGTACCTGCTGATGC
TGTCTCACTCGATGTGGAGACCTTGGACTTTGGTGATGCTAGCAATACAA
CAATGTGCATCTGCATCTATGGTCGTTTTCTTCGTAAAGATGGATCATAC
TCTTCTCAATTGGTTTTTGCCAAATCAAGGATGGTTCCAAAGGATCTGAC
TCTTCAACGTGCAGAACTACTTGCATCACTAATCAATGCACACACAGGAG
AGATTGTTCGCCGCTCATTCCGATCCTTATTTAAATCATCCTTAAAGTTC
ACAGATAGCCAGATATCTCTTCATTGGATTTCAAACGTGCAAAAGATGTT
GAAACAATGGGTTAGAAGCAGACTCATTGAGATTCATCGCTTCACGCACA
AGGATCGGTGGCTCCATGTTGGATCGAAACAGATGGTTACTGATGTTGGC
ACCAGAAAGGGTGCAACAATCAGTGACGTTGATCAACACTCGCAATGGAT
AAACGGTCAACCTTGGATGTAACTACCTATCTCTGAATTTCCAGCAAAAC
GTGCAAATGAGATAACATTGGACAATCAGGAGATAGTCGAAGCCAAGAAA
GAACTATCCATCAACCAGTTTGATGTTCACGTAACAACATNTAAAACGTG
AAAATGAGATAACATTGGACAATCAGGAGATAGTCGAAGCCAAGAAAGAA
CTATCCATCAACCAGT

Coding sequence (CDS) from alignment at sc0000430:149407..150272

>TCONS_00022678 ID=TCONS_00022678|Name=TCONS_00022678|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000430:149407..150272 (Clytia hemisphaerica)
ATGTGCATCTGCATCTATGGTCGTTTTCTTCGTAAAGATGGATCATACTC
TTCTCAATTGGTTTTTGCCAAATCAAGGATGGTTCCAAAGGATCTGACTC
TTCAACGTGCAGAACTACTTGCATCACTAATCAATGCACACACAGGAGAG
ATTGTTCGCCGCTCATTCCGATCCTTATTTAAATCATCCTTAAAGTTCAC
AGATAGCCAGATATCTCTTCATTGGATTTCAAACGTGCAAAAGATGTTGA
AACAATGGGTTAGAAGCAGACTCATTGAGATTCATCGCTTCACGCACAAG
GATCGGTGGCTCCATGTTGGATCGAAACAGATGGTTACTGATGTTGGCAC
CAGAAAGGGTGCAACAATCAGTGACGTTGATCAACACTCGCAATGGATAA
ACGGTCAACCTTGGATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012743XLOC_012743Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022678-proteinTCONS_00022678-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022678-exon-sc0000430-1491911889:149407..150272TCONS_00022678-exon-sc0000430-1491911889:149407..150272Clytia hemisphaericaexon
TCONS_00022678-exon-sc0000430-1510915933:149407..150272TCONS_00022678-exon-sc0000430-1510915933:149407..150272Clytia hemisphaericaexon
TCONS_00022678-exon-sc0000430-1575043694:149407..150272TCONS_00022678-exon-sc0000430-1575043694:149407..150272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000430supercontigsc0000430:149407..150272 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06333	1.37571	0.672579	0.250815	1.52925	1.74591	0.582128	1.10491	0.667343	1.59975	0.56313	0.88396	1.22106	1.0816	0.429279	0.460682	0.689134	0.540143	0.459222	0.455751	0.417679	0.611188	0.0619149	0.633837	1.10156	1.70752	0.431266	0.435458	0.133541	0.0610646
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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