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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022639 ID=TCONS_00022639|Name=TCONS_00022639|organism=Clytia hemisphaerica|type=transcript|length=2288bpRun BLAST on NCBI protein sequence of TCONS_00022639-protein >TCONS_00022639-protein ID=TCONS_00022639-protein|Name=TCONS_00022639-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp MLGMEVFLKRDYMQITGSFKERGARNTLMMLSKEQKARGVIAASAGNHAMRun BLAST on NCBI transcript from alignment at sc0000429:216063..225252- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022639 ID=TCONS_00022639|Name=TCONS_00022639|organism=Clytia hemisphaerica|type=transcript|length=9190bp|location=Sequence derived from alignment at sc0000429:216063..225252- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000429:216063..225252- >TCONS_00022639 ID=TCONS_00022639|Name=TCONS_00022639|organism=Clytia hemisphaerica|type=CDS|length=11340bp|location=Sequence derived from alignment at sc0000429:216063..225252- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00022639 vs. Swiss-Prot (Human)
Match: SRR (Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 3.813e-26 Identity = 99/305 (32.46%), Postives = 153/305 (50.16%), Query Frame = 3
Query: 330 PCTKSHRLSEMLGMEVFLKRDYMQITGSFKERGARNTLMML---SKEQKARGVIXXXXXXXXXXXXYHGKELGIPVTVCMPVNAPITKVSRCEKLKARVYKYGADII--QAKDYALEIAAK------EGLAYINGYDHPDILAGAGACALECIDQVENIDAVVIPIGGGGLIAGCSVAFKSLNPNIEVIGVESVRCAS-YKAALEAGKPVKIEVDQSMTLADGLCVPKIGSNAFETARSNVDKCVTVDEAYIGLAVLRLVEEEKCVVEXXX--XXXXXXXXXXXXXXXXXXRVVFTLCGGNIDST 1202
P S L+++ G +F K + Q TGSFK RGA N + L + E+K + V+ S+GNH A+ Y K GIP + +P AP C+KL + YGA I+ + D + E AK EG+ ++ P ++AG G ALE ++QV +DA+V+P+GGGG++AG ++ K+L P+++V E Y++ L+ GK + + T+ADG+ IG N + R VD TV E I A + E K ++E + + + K + L GGN+D T
Sbjct: 27 PVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAP-----DCKKLA--IQAYGASIVYCEPSDESRENVAKRVTEETEGI-MVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLK-GK-LMPNLYPPETIADGV-KSSIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSPEVKNICIVLSGGNVDLT 320 The following BLAST results are available for this feature:
BLAST of TCONS_00022639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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