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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022595 ID=TCONS_00022595|Name=TCONS_00022595|organism=Clytia hemisphaerica|type=transcript|length=980bp
gtgatttatataagAATTAGAGTAAAAAAATATGACAGGATCGAACTGTT
CCATAGTAGGCTGTAATACAACCAGAAGACATAAAGATATCTCACAGTTT
CGGTGTCCCAACCCAAAATTGCACCCTCAATGGAGTAAAGAATTTCTTGC
TGTTGTGACAAGTGGTAGAGTCATAGATGCAAAATTCAAGACACAAATTG
AAATAAACAATGTTTATGTGtgtgaaaaacattttaaggaaGATGTCTGG
CGATATGCACGCTCCACGCAGTTGAAGGAAGGAATGGTACCAACTTTGGC
GTTGCCTGTCAAAAGCCATGCTAATCAATCAGAACCACGATCAACTTCAG
CCATCAGCAAGAGGGAGGATTTCCAACACTCTCAACAGATGGAAGTCTCA
AACGCTCCTCCCAAGCCATGTTATGCTGGGTATCAGGCTCTAAGAACCAA
AAAACTTAAACTTTCTATTGGTTGGAATGTAATTGATTATATTGATTTTG
CTGAGGCGAAATACAACGAACCACAGTCACAATTCCTTgCATCGACCTCG
TGGAATTCAAAGAAGCAATCCATCTGAAACACCATTATATCCCAAAAACC
TTCCGCTACTCCGAGAATGTCACACTTGATCAAAATTCAGTACCTTTATG
TCAAGAGGAATACCTGAGAGCTCCTGCATGTCCACTACTaatcaaaagtg
aaaaatgttcAGAGTGCAAGAAGATGGAAATAAAAGATCACAGCACAATC
AAAAACGAAAGATGTTAACTTTCCCAGTCCACCCAAATGTACCATTGTCC
TTTGTTTCACCAGAAAGGTTAATATCAACAATCCAGCTtcagaaaaaaga
gaaaaaacctTGGAGCTAGAAAATAAAGCCTTGGTTCAACGTTCGGAAGC
CGCATTATCCAAAGATTCAGTCCCTGTTGATGCAAAACTGAATGGTGATC
TGATTAATATTTTTAGGGTATACCTGAGGG Run BLAST on NCBI protein sequence of TCONS_00022595-protein >TCONS_00022595-protein ID=TCONS_00022595-protein|Name=TCONS_00022595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MTGSNCSIVGCNTTRRHKDISQFRCPNPKLHPQWSKEFLAVVTSGRVIDA
KFKTQIEINNVYVCEKHFKEDVWRYARSTQLKEGMVPTLALPVKSHANQS
EPRSTSAISKREDFQHSQQMEVSNAPPKPCYAGYQALRTKKLKLSIGWNV
IDYIDFAEAKYNEPQSQFLASTSWNSKKQSI Run BLAST on NCBI transcript from alignment at sc0000428:98567..100180- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022595 ID=TCONS_00022595|Name=TCONS_00022595|organism=Clytia hemisphaerica|type=transcript|length=1614bp|location=Sequence derived from alignment at sc0000428:98567..100180- (Clytia hemisphaerica)
GTGATTTATATAAGAATTAGAGTAAAAAAATATGACAGGATCGAACTGTT
CCATAGTAGGCTGTAATACAACCAGAAGACATAAAGATATCTCACAGTTT
CGGTGTCCCAACCCAAAATTGCACCCTCAATGGAGTAAAGAATTTCTTGC
TGTTGTGACAAGTGGTAGAGTCATAGATGCAAAATTCAAGACACAAATTG
AAATAAACAATGTTTATGTGTGTGAAAAACATTTTAAGGAAGATGTCTGG
CGATGTAAGTTTTGATTAACCCAAACACTTCATAAATTTAACTGTACATT
GCATTGGGGGGTACATGAGACATGGGAAACTTTGGAATTTTTTGTATAAT
TTTTATGAAATCTTGCTCGTCATGATTGTTTAATCTGTCCAATATGTGCA
AGGACTAATCTCATATTGAAAATAGAATTGGTTTAATCTTGTTGATTTCC
CCTTCCATCTATTGAATTGTTGTACATATTAAGAAGGAGGAGACAGCCAG
TATAATGGCTATATAAATGATATGATAAAAAGTAATATTGTGGTCAGTTG
TTTGATGATTTTTAATCACTATCTTTTAGATGCACGCTCCACGCAGTTGA
AGGAAGGAATGGTACCAACTTTGGCGTTGCCTGTCAAAAGCCATGCTAAT
CAATCAGAACCACGATCAACTTCAGCCATCAGCAAGAGGGAGGATTTCCA
ACACTCTCAACAGATGGAAGTCTCAAACGCTCCTCCCAAGCCATGTTATG
CTGGGTATCAGGCTCTAAGAACCAAAAAACTTAAACTTTCTATTGGTTGG
AATGTAATTGATTATATTGATTTTGCTGAGGCGAAATACAACGAACCACA
GTCACAATTCCTTGTAATATTCAAATATACATCTTTGATTATATTGGAAA
ATGTCTTGAATAATAGACTATAGTTGCTTCTTTCAACAGGCACCCGAACA
AAAATACATGATTTATGAAACTATTTTTGTGGTGTATAATTCATATTAGA
ATTAACAAGGATAACTTTCACCACATCCAACAACTTTTTTACTTCAATTT
TATTAAATATTAGATGAAAAAATATAGTACAAATCAAAGACCTGTAAAGT
TACCAGTGGGATTTGATGGAAATTAATTATGAATGAATAACAACACTATG
TGTCATTTTTTATCATTATTAGGCATCGACCTCGTGGAATTCAAAGAAGC
AATCCATCTGAAACACCATTATATCCCAAAAACCTTCCGCTACTCCGAGA
ATGTCACACTTGATCAAAATTCAGTACCTTTATGTCAAGAGGAATACCTG
AGAGCTCCTGCATGTCCACTACTAATCAAAAGTGAAAAATGTTCAGAGTG
CAAGAAGATGGAAATAAAAGATCACAGCACAATCAAAAACGAAAGATGTT
AACTTTCCCAGTCCACCCAAATGTACCATTGTCCTTTGTTTCACCAGAAA
GGTTAATATCAACAATCCAGCTTCAGAAAAAAGAGAAAAAACCTTGGAGC
TAGAAAATAAAGCCTTGGTTCAACGTTCGGAAGCCGCATTATCCAAAGAT
TCAGTCCCTGTTGATGCAAAACTGAATGGTGATCTGATTAATATTTTTAG
GGTATACCTGAGGG Coding sequence (CDS) from alignment at sc0000428:98567..100180- >TCONS_00022595 ID=TCONS_00022595|Name=TCONS_00022595|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0000428:98567..100180- (Clytia hemisphaerica)
GCATCGACCTCGTGGAATTCAAAGAAGCAATCCATCTGAATGCACGCTCC
ACGCAGTTGAAGGAAGGAATGGTACCAACTTTGGCGTTGCCTGTCAAAAG
CCATGCTAATCAATCAGAACCACGATCAACTTCAGCCATCAGCAAGAGGG
AGGATTTCCAACACTCTCAACAGATGGAAGTCTCAAACGCTCCTCCCAAG
CCATGTTATGCTGGGTATCAGGCTCTAAGAACCAAAAAACTTAAACTTTC
TATTGGTTGGAATGTAATTGATTATATTGATTTTGCTGAGGCGAAATACA
ACGAACCACAGTCACAATTCCTTATGACAGGATCGAACTGTTCCATAGTA
GGCTGTAATACAACCAGAAGACATAAAGATATCTCACAGTTTCGGTGTCC
CAACCCAAAATTGCACCCTCAATGGAGTAAAGAATTTCTTGCTGTTGTGA
CAAGTGGTAGAGTCATAGATGCAAAATTCAAGACACAAATTGAAATAAAC
AATGTTTATGTGTGTGAAAAACATTTTAAGGAAGATGTCTGGCGATGCAT
CGACCTCGTGGAATTCAAAGAAGCAATCCATCTGAATGCACGCTCCACGC
AGTTGAAGGAAGGAATGGTACCAACTTTGGCGTTGCCTGTCAAAAGCCAT
GCTAATCAATCAGAACCACGATCAACTTCAGCCATCAGCAAGAGGGAGGA
TTTCCAACACTCTCAACAGATGGAAGTCTCAAACGCTCCTCCCAAGCCAT
GTTATGCTGGGTATCAGGCTCTAAGAACCAAAAAACTTAAACTTTCTATT
GGTTGGAATGTAATTGATTATATTGATTTTGCTGAGGCGAAATACAACGA
ACCACAGTCACAATTCCTTATGACAGGATCGAACTGTTCCATAGTAGGCT
GTAATACAACCAGAAGACATAAAGATATCTCACAGTTTCGGTGTCCCAAC
CCAAAATTGCACCCTCAATGGAGTAAAGAATTTCTTGCTGTTGTGACAAG
TGGTAGAGTCATAGATGCAAAATTCAAGACACAAATTGAAATAAACAATG
TTTATGTGTGTGAAAAACATTTTAAGGAAGATGTCTGGCGATGCATCGAC
CTCGTGGAATTCAAAGAAGCAATCCATCTGAATGCACGCTCCACGCAGTT
GAAGGAAGGAATGGTACCAACTTTGGCGTTGCCTGTCAAAAGCCATGCTA
ATCAATCAGAACCACGATCAACTTCAGCCATCAGCAAGAGGGAGGATTTC
CAACACTCTCAACAGATGGAAGTCTCAAACGCTCCTCCCAAGCCATGTTA
TGCTGGGTATCAGGCTCTAAGAACCAAAAAACTTAAACTTTCTATTGGTT
GGAATGTAATTGATTATATTGATTTTGCTGAGGCGAAATACAACGAACCA
CAGTCACAATTCCTTATGACAGGATCGAACTGTTCCATAGTAGGCTGTAA
TACAACCAGAAGACATAAAGATATCTCACAGTTTCGGTGTCCCAACCCAA
AATTGCACCCTCAATGGAGTAAAGAATTTCTTGCTGTTGTGACAAGTGGT
AGAGTCATAGATGCAAAATTCAAGACACAAATTGAAATAAACAATGTTTA
TGTGTGTGAAAAACATTTTAAGGAAGATGTCTGGCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022595-exon-sc0000428-1575043694:99927..100180 | TCONS_00022595-exon-sc0000428-1575043694:99927..100180 | Clytia hemisphaerica | exon |
| TCONS_00022595-exon-sc0000428-1575043694:99318..99601 | TCONS_00022595-exon-sc0000428-1575043694:99318..99601 | Clytia hemisphaerica | exon |
| TCONS_00022595-exon-sc0000428-1575043694:98567..99008 | TCONS_00022595-exon-sc0000428-1575043694:98567..99008 | Clytia hemisphaerica | exon |
| TCONS_00022595-exon-sc0000428-1510915933:99927..100180 | TCONS_00022595-exon-sc0000428-1510915933:99927..100180 | Clytia hemisphaerica | exon |
| TCONS_00022595-exon-sc0000428-1510915933:99318..99601 | TCONS_00022595-exon-sc0000428-1510915933:99318..99601 | Clytia hemisphaerica | exon |
| TCONS_00022595-exon-sc0000428-1510915933:98567..99008 | TCONS_00022595-exon-sc0000428-1510915933:98567..99008 | Clytia hemisphaerica | exon |
| TCONS_00022595-exon-sc0000428-1491911889:99927..100180 | TCONS_00022595-exon-sc0000428-1491911889:99927..100180 | Clytia hemisphaerica | exon |
| TCONS_00022595-exon-sc0000428-1491911889:99318..99601 | TCONS_00022595-exon-sc0000428-1491911889:99318..99601 | Clytia hemisphaerica | exon |
| TCONS_00022595-exon-sc0000428-1491911889:98567..99008 | TCONS_00022595-exon-sc0000428-1491911889:98567..99008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000428 | supercontig | sc0000428:98567..100180 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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