TCONS_00022592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022592
Unique NameTCONS_00022592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022592 ID=TCONS_00022592|Name=TCONS_00022592|organism=Clytia hemisphaerica|type=transcript|length=402bp
GAAATTGATGAACCAGAAGGCGAACTTGACAAAAAAATGCTAGAGCTTTC
CTTGTACAGAAACGACCTATCAATAATTGAATGTCTCAATGGCAGATTCA
TGTTGGTGGATGACAACGTTGATATAATGCTAAAACGTAGACATTATAca
acatcaaaatcaaatcaggaTTTGCATTTGTGTCATGCTATTGCTGTTAA
ATGTCGCATTCCGATTCCAGACGCTCTCAAACATTTAACCACTGACGACA
ACCCAGCACCAGACATTACGTTATGCTTTCCATCAGAGAAAGACGATATC
CAACTTCGTAAAGAGTTCAAGATCTTGATGGCGAGAGACCTGATCAAAAA
CATCCCTGGTCTAAGTTGGATGAAGAAATTTGTTCCAACGTATATTTCGC
AC
Run BLAST on NCBI

protein sequence of TCONS_00022592-protein

>TCONS_00022592-protein ID=TCONS_00022592-protein|Name=TCONS_00022592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
EIDEPEGELDKKMLELSLYRNDLSIIECLNGRFMLVDDNVDIMLKRRHYT
TSKSNQDLHLCHAIAVKCRIPIPDALKHLTTDDNPAPDITLCFPSEKDDI
QLRKEFKILMARDLIKNIPGLSWMKKFVPTYISH
Run BLAST on NCBI

transcript from alignment at sc0000428:112235..112868+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022592 ID=TCONS_00022592|Name=TCONS_00022592|organism=Clytia hemisphaerica|type=transcript|length=634bp|location=Sequence derived from alignment at sc0000428:112235..112868+ (Clytia hemisphaerica)
GAAATTGATGAACCAGAAGGCGAACTTGACAAAAAAATGCTAGAGCTTTC
CTTGTACAGAAACGACCTATCAATAATTGAATGTCTCAATGGCAGATTCA
TGTTGGTGGATGACAACGTTGATATAATGCTAAAACGTAGACATTATAca
acatcaaaatcaaatcaggaTTTGCATTTGTGTCATGCTATTGCTGTAAG
TCCAAATATGTATTGGGtttaaaattcataaattaGAAGTCGGTGTTGCA
GAAAGTTTCATAATTCATTAATTTATAATAGTTNGAGtttaaaattcata
aattaGACGTCGGTTTTGCAGAAAGTTTCATACAGTAATTCATTAATtca
caatatttttatttgatataattactttttactatttttatctgataaaa
ttgttttttcttcattttcaaccaaAGGTTAAATGTCGCATTCCGATTCC
AGACGCTCTCAAACATTTAACCACTGACGACAACCCAGCACCAGACATTA
CGTTATGCTTTCCATCAGAGAAAGACGATATCCAACTTCGTAAAGAGTTC
AAGATCTTGATGGCGAGAGACCTGATCAAAAACATCCCTGGTCTAAGTTG
GATGAAGAAATTTGTTCCAACGTATATTTCGCAC

Coding sequence (CDS) from alignment at sc0000428:112235..112868+

>TCONS_00022592 ID=TCONS_00022592|Name=TCONS_00022592|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at sc0000428:112235..112868+ (Clytia hemisphaerica)
GAAATTGATGAACCAGAAGGCGAACTTGACAAAAAAATGCTAGAGCTTTC
CTTGTACAGAAACGACCTATCAATAATTGAATGTCTCAATGGCAGATTCA
TGTTGGTGGATGACAACGTTGATATAATGCTAAAACGTAGACATTATAca
acatcaaaatcaaatcaggaTTTGCATTTGTGTCATGCTATTGCTGTTAA
ATGTCGCATTCCGATTCCAGACGCTCTCAAACATTTAACCACTGACGACA
ACCCAGCACCAGACATTACGTTATGCTTTCCATCAGAGAAAGACGATATC
CAACTTCGTAAAGAGTTCAAGATCTTGATGGCGAGAGACCTGATCAAAAA
CATCCCTGGTCTAAGTTGGATGAAGAAATTTGTTCCAACGTATATTTCGC
ACGAAATTGATGAACCAGAAGGCGAACTTGACAAAAAAATGCTAGAGCTT
TCCTTGTACAGAAACGACCTATCAATAATTGAATGTCTCAATGGCAGATT
CATGTTGGTGGATGACAACGTTGATATAATGCTAAAACGTAGACATTATA
caacatcaaaatcaaatcaggaTTTGCATTTGTGTCATGCTATTGCTGTT
AAATGTCGCATTCCGATTCCAGACGCTCTCAAACATTTAACCACTGACGA
CAACCCAGCACCAGACATTACGTTATGCTTTCCATCAGAGAAAGACGATA
TCCAACTTCGTAAAGAGTTCAAGATCTTGATGGCGAGAGACCTGATCAAA
AACATCCCTGGTCTAAGTTGGATGAAGAAATTTGTTCCAACGTATATTTC
GCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012678XLOC_012678Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022592-proteinTCONS_00022592-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022592-exon-sc0000428-1491911889:112235..112429TCONS_00022592-exon-sc0000428-1491911889:112235..112429Clytia hemisphaericaexon
TCONS_00022592-exon-sc0000428-1510915933:112235..112429TCONS_00022592-exon-sc0000428-1510915933:112235..112429Clytia hemisphaericaexon
TCONS_00022592-exon-sc0000428-1575043694:112235..112429TCONS_00022592-exon-sc0000428-1575043694:112235..112429Clytia hemisphaericaexon
TCONS_00022592-exon-sc0000428-1491911889:112662..112868TCONS_00022592-exon-sc0000428-1491911889:112662..112868Clytia hemisphaericaexon
TCONS_00022592-exon-sc0000428-1510915933:112662..112868TCONS_00022592-exon-sc0000428-1510915933:112662..112868Clytia hemisphaericaexon
TCONS_00022592-exon-sc0000428-1575043694:112662..112868TCONS_00022592-exon-sc0000428-1575043694:112662..112868Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000428supercontigsc0000428:112235..112868 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0255436	0	0	0	0	0	0.210984	0	0	0	0	0.126963	0	0	0	0	0	0	0	0	0	0.214807	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top