TCONS_00022567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022567
Unique NameTCONS_00022567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022567 ID=TCONS_00022567|Name=TCONS_00022567|organism=Clytia hemisphaerica|type=transcript|length=1533bp
TACAATAAAGCATCAGCATGGCAGAATGAAATCAATTAGAATCAAAGTTC
TAAGTATAGGGAATACAGAAACTGGGAAATCATGCTTGATAAAGAGATAC
TGTGAGAAAAGATTTGTCAATAAGTATTTACCAACAATTGGTGTTGATTT
TGGTGTTTCAAATATCAATGTTGATGATAAAGAACTAAAAGTCAATTTAT
TTGATTTATCTGGGCATGCAGCTTTCAAGGAGGTACGGAATGAGTTTTAC
AAGGACACTCAAGCAGTCATGTTGGTTTATGACGTCACTAAACAGCATAC
ACTAGATGCTTTAGATTCATGGATGAATGAAATTAAAAGTTACATAATAA
ATCCTAAAGATGTTGAGAAAATCATCTTCATGGTGTTAGCAAATAAAACT
GATAAGTCAGACAGGTGTGTTAAACACGGTCATGGGAAGTTATGGGCTCA
AAAGAATGGCTGTTATTATTTTGAGACTTCAGCAAATACAGGAGATGGAG
TCACCAAAGCTTTTCAAATGATGTTTAAAGCAGTGATTGAGGTTCTGGAT
ACAGGTCTAAGACCAAAATCAGCTGGAATTACACTAGGGTATACAAAAGA
GCAAGTAGATCTCATcaggaaattacaaaatgcaAAGGATCATTATGGAT
GTCTTGATGTACACCGTCATTGTTCTAAAGAGGATGTCACTAAATGTTAT
AGAAGGCTTGCTAAGTTAATTCATCCCGATAAATGTACTGCTCCTGGAAC
AGAAGATGCGTTTAAGAAATTGACCACTGCTCGTGAGGAGTTGATTAAGT
TATTCAAATGAAGCTGTATATTTTATTTTGTGGATTGATCTCCCACTAGC
TTATCTTTCAAATTAAAATTGTAGTTACAATTGGACGATCAAACTTCTAT
CAAACAACCCCTCTCACAGActcactgggaccccttcctactggaaaaat
tggccaaaatatcgtctccgTTGAGAGAATTATCTTACAATTTTTGTTCc
ctttgaaaataatcaaatgaacCAATCCTCGCTGCTACATATGTTATTCT
TTCccatcctcactgaattttctgacttgaaaaaaaagaaagaattgaga
tccccagccataaaagatATTGTTTTTCAGTCTGTTATTTCTATCCTCGC
TGGCTGAAAAATCCTGCCAGATAGATCTGTGAGAAGTAGGTGACATTAAA
GTTACAAATAACTTAGTCTTGAGGCTTTGAATAATGAAATTGATGTATAA
AATCTTCTTGGTTAATTCAAATAAAATGTTTAGTGTCAGagcatttttct
aaattatttttgtataatatatttgattttgattttattaaagaTGTTGA
TTTTagttaaaaatttattattattttttttgattttaaatgaaAGTGGT
GAttattgtaaataatttttttatttttttcaatcaggGGTGTTTTGGAT
AGTATCTTTGTTGATAGACGTATGTTGCCCAAAATAATACCTGATTCAAG
TGCTCTTAAGAAATTTCAAACCCTACCTTGAGG
Run BLAST on NCBI

protein sequence of TCONS_00022567-protein

>TCONS_00022567-protein ID=TCONS_00022567-protein|Name=TCONS_00022567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
TIKHQHGRMKSIRIKVLSIGNTETGKSCLIKRYCEKRFVNKYLPTIGVDF
GVSNINVDDKELKVNLFDLSGHAAFKEVRNEFYKDTQAVMLVYDVTKQHT
LDALDSWMNEIKSYIINPKDVEKIIFMVLANKTDKSDRCVKHGHGKLWAQ
KNGCYYFETSANTGDGVTKAFQMMFKAVIEVLDTGLRPKSAGITLGYTKE
QVDLIRKLQNAKDHYGCLDVHRHCSKEDVTKCYRRLAKLIHPDKCTAPGT
EDAFKKLTTAREELIKLFK
Run BLAST on NCBI

transcript from alignment at sc0000427:218305..231886+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022567 ID=TCONS_00022567|Name=TCONS_00022567|organism=Clytia hemisphaerica|type=transcript|length=13582bp|location=Sequence derived from alignment at sc0000427:218305..231886+ (Clytia hemisphaerica)
TACAATAAAGCATCAGGTATGTCAAAATTACTTTGTTCTTTGTTAGAGAG
CAGGATTCTTTGGTCTTCTGGATGGAAGATTtcttaccgtgaaaaagggt
aacttgcatcagtggaggctaacatgcataggcctcaaatgaatgacctg
gctggtcattaaaatacaactaggcagctccgctcgcagctctactctac
catttttgttttgatttatttttgtattttaatgaccagctgggtctttc
atttgaggggactatgcatgttagcctccaatatgatgcaagttaccctt
tttcacggtaagtTTTCAAAgctactttaaaaaaaaagagtctATAAACC
AGACGTCTGTGCTCGATAGGattgatcatcggaacggcttgatgacggat
cgatatgtgatcgatggattacttaacaatccggataggagatcgatgga
agattcagccattaaaaagtcttgagtatcgatccttcgttgatccatta
tcgagctagtatttcaatcgagtataccgattcgtcatcgatcgttaacc
aattcgattgttaatcgatttgttatcgatcatAAAtggagtatgagtcg
atagggtcaataagatcgatgatagatcgataaataatcgatagctaatc
ataagcttaaaaaaatcttgagtaccgatcctctatcgatctcctatccg
gatcgttaagtaatccatcgatccgtcatcgagccgttccgatgatcaat
cttatcgagcgcggacgtctggtataaagtcaaattttttgtaagttttt
tttctcaagttttAGCCATTAAAAAACTGACTCTGGACAAGAGTTCATAT
CTCTAGTTTGGCCTTGTTGGTATATCATTCCGTAAAGCATAAACCATGCT
GCTGTGatgaaatatttctcatatttttgTCGGTTTCGAGAACTTTGGCT
GGAGAGATTGAGTTTTTTGTTTTGGCTTTTCGCAGACCCGGCAGACTCAG
TCAGGCTCAAATATTAGAGGAGATAATTTCAGTTGATAGTTCTTagattg
gtagtgtgaaggtttcgatcacagacttgcacaGCAATGGACCAGACGTA
cccaatcgatgaaatcaatacgggaaatcaatcgatattaatcgatttta
atcgataataatcgatagtgatcgatagctaatcgataaacaatcgatag
ctaatcgatacTAAAACTTTACGTTCTTATAGATTGGATTCAATTGTTAT
CGATTGCTGTCGATTAATCGCTGATTGCTttcgattgttatcgattaata
tcgatttCTTTATATTCGCTTTTAAAAACGCAACCCTATcgtggtttttc
taatttaacgcgtggcaataaataattattttcgacGCTACGCGTGAAAA
ACTAGATAACAATTAATTACAATATTCAAGTGTTTTAAGTACACGTTAAA
GGCTTGTGTAATATATATTACATATAGATTGTATAATGTATTAACAAGCT
TTAGCTGATTTGGAGGAGCCAGAGGAGGATGACGAAGATCCTTtaatttg
tgtttttgaaagaaagaagtttatcaaaaataaaactttcctgtctaata
tgtttctaattttttcttcccgcgaaaatttcggAAATCTCTATTAACCC
GACCTTGACCTCGACcctgacccttgaaaaaggccaaccctcgacccttg
gaaaaaagccgaccctcgaccaaaatacaataaaaagccgaccctgggta
aaaaagctgttttttggcagtgtttttttttaatataaaagttGAGAAGA
CAAGCAGGGGgtgcatagtgtcctcctgggttggttccccccgctaaaaa
ttaaaatttttctccattccccactcttttatttcccccaccatatttca
aaatttttcggttcccccctcttttttgaattccccCAGCTATTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCCCCCCCCCCACCCGGTGGGTCGTATTATCtgctttttga
tgttttactgTGAGTGGAAGATAATATAATATCTCTCGTGCATCAACGTA
AAACGTAGATATTAAGCCTGGGATATATGGGTACGAGGCTGATTATACAT
GTTGGTCAATAATATGATGCCCCCGGGGGGGTCTTGTGAAGAATATTCTC
ATCATCCTCCTCCCCCCCCCCACTGACGACTATTCTTGAAGTATTCTTTA
AGTGTTCTAATGATCAGTTTTTGGaatattcatccaaaaaaaatcttata
aaagtcgctaaaaaagcattttttacccagggtcagctttttattgtatt
ttggtcgagggtcggcttttttccaagggtcgagggtcagcctttttcaa
gggtcaggGTCAAGGTCGAGGTCGGGTTAATGGAGATTGCCGAAAACTTC
TTCCCTTAAAATACGCTACGATAttatcgtgagatacactctggtacaca
gAGTAGCGATCATACATACAGAAAATTAGCACAATTGATCTtaatcgata
acaatcgaattcaatcgatggctaatcgataataatcgaattTAATCAAT
GAAAATCGATACCAAtcgataataaaattttacgttCCTATCAATTGGCC
ATCGATTAGTAATCGATCGATTATCGATTACGAACGACTTTTATCGATTG
ACATCGATTAAAAGCGACAATCAATGTTATCGATTGGGTACGCCTGGAAT
GGACTGTGTGTTTGAATCATCCCAAGCACTaccaggcagggtgttaggga
aatatggtgatagactttTAAATTGGAAGGAAACTTAATaaatttttata
tcattttcttcatttttaatggTTTCAAGGTACAAACTTTCTCTGTATCT
CAAAACTCACTTTACAATGGtttctcctttcaatttttttatagtttctt
tTCCTCAACAAGGGAAAAAACCTTCATTCAATTACAATTTGTTGGGATGC
TAAAAGGataggaccctcccggcgctccggaaactTCCAAAGTTTTCCTG
AGCAGCTcaaaaatactatttttctctccagagctcttccggtgcttccg
gagcaagtgatttttaacacgTTCTAAAAAAACatggttacaaaaaatat
tatacATACATATATGATGGTTCagccattaatgaaattgaatttgtcac
attatATTCAAAAGCATCACTGGTGgtcgaaatattgaaaaattaaaaaa
acgtgaGGTTTCACTTCCATGAGTCggctgattttttaaaaatacgcACG
TGCGCAGTTAGCTTTCACATGATTAGCACAGAGCGAGCGGTATTGTAATT
ATATCGCAGATATCTTGCTCCGGAACACCGGAAGTGCTCCGGAATCTTCA
AGTGTTCTGGAGCACGAAAAAACGGCACTTTTTGCTCCGGACGTTTCCAG
AAAGCCGAGAAGGTCCTAAGAGGATTATTTCATTTAATAAGTTGTTTTCT
TTTAGATAGAGTGCTTTTTTTTCATGGATTCTTTGGTTTGATCTTTTCTC
TGTCTCTGACTTCCTGTACAATGTGAAATTGAAGTCAGAAAGCTGATGTT
TAAAGAACTCAAGGAACTAGGCTTTTTCCTAAAATTCACTGTACactagt
ttaattttttttattcggGCTCTCTTACTTTTTTATAACAAGTCAAACAG
AATATTTTATGCATTTGTctctcttttattttcattattttctaaCTCGC
CATATATAAAACTTGTCCCTTTCCGTAACTCgccaaaaaagtaaaatcag
ccACCATGAAGAGCCACCATAGAGCAGGAAGGCAGGCCGTACACTATTAA
GCAGAcctaccgggtgtgccacaaaaaagtttcgctctttgaaactgatt
ttctcgaaatctaaagaCTTTAAAAGAACCATGCCTATTTCATTGGacag
aagaaagataaacttaaattttgatgggtcatttattaaatttgcttcat
tagatcaaaagttatgctcaattgaataaaaaagttacttgctcaaaaac
gttaaaaaatcgacctatcaaatttaaaagaagcataattacatgatgca
tcaCTATTCGTTTcagtcatcaaaaatgataattagttgtctaaatgacc
ttttgttatataaaggaaggttgaattatatcaaaaggaagaaaactcgt
cgaaaaaaaacaaaaaatctggtaaaattctttaaaatgcataaaatatg
ggtttcgaggtgcATATCCTACGGTGGCCCACAAGAGTCAATGAATCTTT
GCTTTTAtcaagaatctttgttttttactaagaatctttgttttttttac
taagaatctttgtttttactaagaatctttgttttttactaagaatcttt
gtttttactaagaatctttgttttttactaagaatctttgttttttttac
taagaatctttgtttttactaagaatctttgttttttactaagaatcttt
gttttttttactaagaatctttgtttttactaagaatctttgttttttac
taagaatctttgttttttttactaagaatctttgtttttactaagaatct
ttgttttttactaagaatctttgttttttttactaagaatctttgttttt
actaagaatctttgtttattttactAAGAAAGagtctttgttttttacta
agaatctttgttttcaCTAAGCAGGGTGGCCAGCGATACtggaaatactt
gaaaatacttgaatatactggaaaaaaatattggtacttgattatactgg
agtttttaaaaaaatgcccatttttccagtatatacttgaaaatgataaa
ttggaatacttgaaaatacttgaatttcttttttcaatcaaatcttcTAT
TTCCAGGGCTCTTACAGGCTGTTTTGAAgtataaattttccaaaattttc
ttttcggacccaaccatggtgggtcctccTAATAACAATGTATTGTACCC
TATTTGTAAGGTTGGACATTCTTGGTTGGTCTTGTTCACTTAACCTATTT
GATAtggcttttttaaaaaagatgaaCCTTAATGGgcatacaaaaaataa
aaaaaagtaaaagcagaATCTTAGATATTCTTCAGCTCAAGTTATTTACT
GCAAGATAACCCTcattgagaatttcaaaaatctagccTTTGGAGCATGT
ATTGAAAGAATATATCCAATGTGCACATTTCCACTCTTTCTCTGCCAAAT
GGATATCTGACACTTACAAATCAAGCTACTGCTGAAAAATAGAGCCCATG
ATAAATGAATTGTGCAGGCTAATGCTAaagcggtcagggaaaacctggaa
aacctggaaaaagggctatttttagaaaaagtcagggaaaatctGGAAAA
GCCAGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtt
gtttttactaagaatctttgtttttttcgcttCGGCTGACGGTTAAACTG
TTTCGGCACCCGGTAAACCTTACATCTtcattttgtgtattttacagacc
aatttttttactttgcgCCTTTGAACGACGAGAGCAAAAGCCGAATAAGT
TTTCGGTCTGTTTTATTTCTCTGCCTTATCTGTTCTTCCTTTCTCGAAAA
CAACAGAGGCACTGCTAAAAGGTGAGCACGTGCATGTCTACAGTCACAGG
TAGTAGTTCATTTCTTGGATTTTCCTTGATACCTGATTTGTAGTTTACTG
GAATTGAATGAATACTTACATATTATATGGGCTAGTGATAGATGATCGAA
TTTATTGTCTTGACAGACAGGAGGGGGCAAGTGAGCCTGGAAACCTGGCT
TTGACAATAAGAAGTTTGTTGAATcctcgaaagcatccaccgaggGCGAG
GAGCGTCAACGTTAACTTAGTAAGTTAGTAAGGTATATTTTATcctatac
cgtattacttccaatgaacgccccctcgaataaacgccccctcgaataaa
cgccccctttttaaaaaaaattataaacgcCCCCCTCTTTTAAACGATTC
CCCTtagagggggcgtttatttagaTTCTATTTAAATTCTATTTAGATCA
AGTAGCTCTGAGGAAAGTATTATATAAAGAAAGGCAAAGAATCTAGTTAA
AATATGCCTTCTTTTAATATTCAGAGTAATTTTACCTCGTACTTTGTACT
TATAATAGCAGTATTTACGCTAAACGAACCTAGGAGAGGCCAAATTTCAT
TCCAGACCCACCGTCTATTAGAGACCTGAGAGTAAAAATGTGActaagtc
cgatttttgaggacATTTTTTCCGTCTGAATATACCCGAAATCAccgttt
tgcagattttcatttgctttttcttagtttttcccactaaaaaattattg
ataacaatgctcattATTACCTTAAAGGTTCGTGCTAAATTCTATCCATC
ggcacaaaatttaaaatttcaactttttgcttcactttttttactGGAGA
ACATAGTTACCTAACTTAGACCATGcttagaccagcggccgagNNNNNNG
ATCAACCATAGACTAtttcttgtttcatttgtttattaacaccttcacat
gaaagaacaatttttttgtttaatttcaacagctataaaggtgttacaaa
acaatacaataaaaaagCAAGTAGAAACCACCTCTAATCTCAAGATCAAT
CAGAAATGATTTATGCGATtattcatgcatatattatgacgtaaaagaga
aaataacaataggagacgaagtaaggatatgtgtTTCCCAttagaggggc
gtttatttagaTTCTATTTAAATTCTATTTAGATCAAGTAGCTCTGAGGA
AAGTATTATATAAAGAAAGGCAAAGAATCTAGTTAAAATATGCCTTCTTT
TAATATTCAGAGTAATTTTACCTCGTACTTTGTACTTATAATAGCAGTAT
TTACGCTAAACGAACCTAGGAGAGGCCAAATTTCATTCCAGACCCACCGT
CTATTAGAGACCTGAGAGTAAAAATGTGActaagtccgatttttgaggaa
attttttcCGTCTGAATATACCCGAAATCAccgttttgcagattttcatt
tgctttttcttagtttttcccactaaaaaattattgataacaatgctcat
tATTACCTTAAAGGTTCGTGCTAAATTCTATCCATCggcacaaaatttaa
aatttcaactttttgcttcactttttttactGGAGAACATAGTTACCTAA
CTTAGACCATGcttagaccagcggccgaggtagtgaaATGTGTCGATTCG
TAGGACATCGTTGAGATCAAGGCAAATTTTTGCTAATTTGCTGCTAATAG
ATAGcggattttacaaaaaaaaattgccccTCTAAtgtcctgcagttttc
gagtaaatcgatttttagttattCGATTAAAGTTAAGGGATATATCACTT
TTTACAGGAACAGGAAAACGCCAACTGATCtcaggggtgccctacgaaaa
cctgtTTCAAGACCTTTTTAGAATTTGGGACGACGGTCTATCTAGCCTTT
CTTGGGAACCGCCAGTCGTCGCTTTTGTGctagtcggaaagcttttcggA
GCTAGAACCCGACTAGTTatgtcggcacatcaaagggccACTTCCAAGCT
CTCTGATCAGAGCTTTACCTTGGgcgccgccaatacgccatcgatCAGAA
taacaaagattcttagtaaaaaacaaagattcttattaaaaaacaaagat
tcttagtaaaaacaaagattcttagtaaaaacaaacattcttagtaaaaa
caaagattcttaccaaaaatcaaagattcttagtaaaaacaaagattctt
agtaaaaacaaagattcttagtaaaaaaacaaagattcttagtaaaaaaa
caaagattcttagtaaaaaaacaaagattcttagtaaaaaaataaagatt
cttaatataaaaacaaagattcatTGACCCTTCTGGGCCACCGTAatatc
cagccttacatagacatATTCAGTCTACAACCAAAAATCTAAGGAAAACt
ttggtaaaagtaaattaaaatgattttgatgaagattttaaaacttttcg
acccatcagtttcaaaatttatgtgtttaattactgaaaaatgctcttaa
ttatGTAAAGCCTATTGTGATTGACaggtttaaaagaaaaatttaatagg
tcgatttttaacgttttcgggcactttctgaaagtaacttttttattcaa
ttgagcataacttttgatctaatgaagcaaatttaataaatgacccatca
aaatttaagtttatctttcttctttccaatgacaTAGGCATGGTTCTTTC
Aggttcttttaaagtttttagatttcgagaaaatcagtttcaaagagcaa
aacttttttgtatatctatagaggtatgcgattcagactattCTACAGTA
GACAGTTTTTTCATCAACCTTTTCTTAATAACGAAGTTGCTTGTTAGACC
TACCAATGCTCAAGGTTTATCCATGAGGCTTATGCTTTTGAACCATGCTT
TACGCTTTTTTATTACCCAAACAACTAATCCAACTTCATGGAACAATAAT
AGTTccaaatcgaacagtaatcaaataaaaaaaatttgggtaaaGTTTGA
TGACTGTTAGATTGATGTTTGATCAGGATTCAATTATAGTTTGATAGGTT
TGATCGCAGTTTGTTCACTAGAGAGGTTCGATCAAAGTTCGATAGGTTTG
ATCTTTTCGATTGCTTTGTGACAAGGTTAATAACCATAGCAAGTGCCACG
CtttaattattgaatttttgtgattttaggtTAGGCGCATATTTGGAGGA
GGGTGGTGTTTTAAAAAAGAGGGAATTTTGGGTGAATTGTGAGAATTTGT
TGCACTCGCAAATCAATTttaggttagaaaaacgtcaattgacaTTAGGG
GAGCCTTCCAAATTCAGACTTGCCACGGAAAACGTCAAATGgacgttttg
attttgaaccCCTACCCCCATTCAAATAATGTCGGCCATGGCAATCAAAC
TTGATCTCAAAATATTCAACCCTTCTCCTCCCATTGCTCGCGCTGTATAT
GAATAtttcatcgttgtttcgtcagTCATCTTTATTTTAGCTATACGACT
CGCATAGTTTACATTTAAGAAATAACAgaaataatttctaaactttttca
cCCATAATCCCGGAatttttatctccataataCAAAGCGACAGAAAAAAA
CCGGCCTTCTGCAGGCCACGCGAGCCGTCAAACAAAGAGAACCCAAGGCA
TAAACATTGGGCCGTTTGTTATGGTTTTCAAAACAGCCGAAGGGgattga
ttaaaaacaaacatGGTGAAGTAACATTTGGCATGGAATGAACTTctcta
aaattgatttttctggtgaaaatttctttgCCACAAAAGAACATTAACAA
ATTATACCCCTACCCCCTTCTCCCAAAAAACTTTGTTTAGGCTTTgatta
tacgctaaagtaaaaataattcttcaCATATAATTTCAACTTCCAGGGGG
TTCTACCCCagatttccaggggataatttGTCATTCAAAATTTCTAGGAG
GGTTGGTGAAAAGTAAATACCAGACACCTTGTAATATGTATTACAGCAAC
ACTGTCCTTCCAAAAATGACATTGTTCCAAAATATCATGGTCTGAATTAA
AATTCTCTCTATTCTAAAACTAACAGCATGGCAGAATGAAATCAATTAGA
ATCAAAGTTCTAAGTATAGGGAATACAGAAACTGGGAAATCATGCTTGAT
AAAGAGATACTGTGAGAAAAGATTTGTCAATAAGTATTTACCAACAATTG
GTGTTGATTTTGGTGTTTCAAATATCAATGTTGATGATAAAGAACTAAAA
GTCAATTTATTTGATTTATCTGGGCATGCAGCTTTCAAGGAGGTTAGTTA
ACCTTTTATTCATATTATTTAACCCTAATATCTTTTGAGGGCATAAAGTG
AATACAGAATCTAGGATTACACAAGGTTAAATGTTTTCATATAGTATTAT
CAGTAGTATACCTGACATTGTTTACGTTTTTCACATAATTGATTAATTTG
TatttgtcaaattgaaattGGCCATTATTCTTTCGAGagtcattttttaa
agaatcatCTCTGTGCCAGAAAACATTCTTTGAATTTTCCAAGGACTTGT
TTGTAAATTGTTACTTATTCTATTCCATAATTCTAGAAAAGAGGTTATCA
CTTTgtaacaaaaattgaaaatctttagATTTAAAAGGGGGTCCTTTGTA
TAAGTGGAATATGATGATTCTATATAATAACAGGTGTTTTATCATATTAA
TATTTTCTTGTAAAAAGGTACGGAATGAGTTTTACAAGGACACTCAAGCA
GTCATGTTGGTTTATGACGTCACTAAACAGCATACACTAGATGCTTTAGA
TTCATGGATGAATGAAATTAAAAGTTACATAATAAATCCTAAAGATGTTG
AGAAAATCATCTTCATGGTGTTAGCAAATAAAACTGATAAGTCAGACAGG
TGTGTTAAACACGGTCATGGGAAGTTATGGGCTCAAAAGAATGGCTGTTA
TTATTTTGAGACTTCAGCAAATACAGGAGATGGAGTCACCAAAGCTTTTC
AAATGATGTTTAAAGCAGTGATTGAGGTTCTGGATACAGGTCTAAGACCA
AAATCAGCTGGAATTACACTAGGTATTTTGACctcttttcaagattttca
aattcatatcGGCTTCTTTTTATAATGTACAATTTTACGAATTTTCTTCT
CAAATGAAATAAAGTATTCTACCATAACCCAAAGTCAACCCCTGGTCCCA
TAGAATGACACCAGCCTGTGCCTCACCAAACCAGGAGATTTAAAagttat
ataaaaaaatcaatgtttaGAGCCTGAAAACCTGGGTTATCTAGAATCCC
AAACTCCAATTAGTGTTCTAGTCGGCCTGGTTGATCTTAAAAGGAAATCT
GTCCTATCAATAGAATCATAAGAATCTTGAGACCTTATTGTTGTGTAAAT
AaccattattttattttgatcttTGCTCCTTTTCAGGGTATACAAAAGAG
CAAGTAGATCTCATcaggaaattacaaaatgcaAAGGATCATTATGGATG
TCTTGATGTACACCGTCATTGTTCTAAAGAGGATGTCACTAAATGTTATA
GAAGGCTTGCTAAGTTAATTCATCCCGATAAATGTACTGCTCCTGGAACA
GAAGATGCGTTTAAGAAATTGACCACTGCTCGTGAGGAGTTGATTAAGTT
ATTCAAATGAAGCTGTATATTTTATTTTGTGGATTGATCTCCCACTAGCT
TATCTTTCAAATTAAAATTGTAGTTACAATTGGACGATCAAACTTCTATC
AAACAACCCCTCTCACAGActcactgggaccccttcctactggaaaaatt
ggccaaaatatcgtctccgTTGAGAGAATTATCTTACAATTTTTGTTCcc
tttgaaaataatcaaatgaacCAATCCTCGCTGCTACATATGTTATTCTT
TCccatcctcactgaattttctgacttgaaaaaaaagaaagaattgagat
ccccagccataaaagatATTGTTTTTCAGTCTGTTATTTCTATCCTCGCT
GGCTGAAAAATCCTGCCAGATAGATCTGTGAGAAGTAGGTGACATTAAAG
TTACAAATAACTTAGTCTTGAGGCTTTGAATAATGAAATTGATGTATAAA
ATCTTCTTGGTTAATTCAAATAAAATGTTTAGTGTCAGagcatttttcta
aattatttttgtataatatatttgattttgattttattaaagaTGTTGAT
TTTagttaaaaatttattattattttttttgattttaaatgaaAGTGGTG
AttattgtaaataatttttttatttttttcaatcaggGGTGTTTTGGATA
GTATCTTTGTTGATAGACGTATGTTGCCCAAAATAATACCTGATTCAAGT
GCTCTTAAGAAATTTCAAACCCTACCTTGAGG

Coding sequence (CDS) from alignment at sc0000427:218305..231886+

>TCONS_00022567 ID=TCONS_00022567|Name=TCONS_00022567|organism=Clytia hemisphaerica|type=CDS|length=3240bp|location=Sequence derived from alignment at sc0000427:218305..231886+ (Clytia hemisphaerica)
ACAATAAAGCATCAGCATGGCAGAATGAAATCAATTAGAATCAAAGTTCT
AAGTATAGGGAATACAGAAACTGGGAAATCATGCTTGATAAAGAGATACT
GTGAGAAAAGATTTGTCAATAAGTATTTACCAACAATTGGTGTTGATTTT
GGTGTTTCAAATATCAATGTTGATGATAAAGAACTAAAAGTCAATTTATT
TGATTTATCTGGGCATGCAGCTTTCAAGGAGGTACGGAATGAGTTTTACA
AGGACACTCAAGCAGTCATGTTGGTTTATGACGTCACTAAACAGCATACA
CTAGATGCTTTAGATTCATGGATGAATGAAATTAAAAGTTACATAATAAA
TCCTAAAGATGTTGAGAAAATCATCTTCATGGTGTTAGCAAATAAAACTG
ATAAGTCAGACAGGTGTGTTAAACACGGTCATGGGAAGTTATGGGCTCAA
AAGAATGGCTGTTATTATTTTGAGACTTCAGCAAATACAGGAGATGGAGT
CACCAAAGCTTTTCAAATGATGTTTAAAGCAGTGATTGAGGTTCTGGATA
CAGGTCTAAGACCAAAATCAGCTGGAATTACACTAGGGTATACAAAAGAG
CAAGTAGATCTCATcaggaaattacaaaatgcaAAGGATCATTATGGATG
TCTTGATGTACACCGTCATTGTTCTAAAGAGGATGTCACTAAATGTTATA
GAAGGCTTGCTAAGTTAATTCATCCCGATAAATGTACTGCTCCTGGAACA
GAAGATGCGTTTAAGAAATTGACCACTGCTCGTGAGGAGTTGATTAAGTT
ATTCAAATGAACAATAAAGCATCAGCATGGCAGAATGAAATCAATTAGAA
TCAAAGTTCTAAGTATAGGGAATACAGAAACTGGGAAATCATGCTTGATA
AAGAGATACTGTGAGAAAAGATTTGTCAATAAGTATTTACCAACAATTGG
TGTTGATTTTGGTGTTTCAAATATCAATGTTGATGATAAAGAACTAAAAG
TCAATTTATTTGATTTATCTGGGCATGCAGCTTTCAAGGAGGTACGGAAT
GAGTTTTACAAGGACACTCAAGCAGTCATGTTGGTTTATGACGTCACTAA
ACAGCATACACTAGATGCTTTAGATTCATGGATGAATGAAATTAAAAGTT
ACATAATAAATCCTAAAGATGTTGAGAAAATCATCTTCATGGTGTTAGCA
AATAAAACTGATAAGTCAGACAGGTGTGTTAAACACGGTCATGGGAAGTT
ATGGGCTCAAAAGAATGGCTGTTATTATTTTGAGACTTCAGCAAATACAG
GAGATGGAGTCACCAAAGCTTTTCAAATGATGTTTAAAGCAGTGATTGAG
GTTCTGGATACAGGTCTAAGACCAAAATCAGCTGGAATTACACTAGGGTA
TACAAAAGAGCAAGTAGATCTCATcaggaaattacaaaatgcaAAGGATC
ATTATGGATGTCTTGATGTACACCGTCATTGTTCTAAAGAGGATGTCACT
AAATGTTATAGAAGGCTTGCTAAGTTAATTCATCCCGATAAATGTACTGC
TCCTGGAACAGAAGATGCGTTTAAGAAATTGACCACTGCTCGTGAGGAGT
TGATTAAGTTATTCAAATGAACAATAAAGCATCAGCATGGCAGAATGAAA
TCAATTAGAATCAAAGTTCTAAGTATAGGGAATACAGAAACTGGGAAATC
ATGCTTGATAAAGAGATACTGTGAGAAAAGATTTGTCAATAAGTATTTAC
CAACAATTGGTGTTGATTTTGGTGTTTCAAATATCAATGTTGATGATAAA
GAACTAAAAGTCAATTTATTTGATTTATCTGGGCATGCAGCTTTCAAGGA
GGTACGGAATGAGTTTTACAAGGACACTCAAGCAGTCATGTTGGTTTATG
ACGTCACTAAACAGCATACACTAGATGCTTTAGATTCATGGATGAATGAA
ATTAAAAGTTACATAATAAATCCTAAAGATGTTGAGAAAATCATCTTCAT
GGTGTTAGCAAATAAAACTGATAAGTCAGACAGGTGTGTTAAACACGGTC
ATGGGAAGTTATGGGCTCAAAAGAATGGCTGTTATTATTTTGAGACTTCA
GCAAATACAGGAGATGGAGTCACCAAAGCTTTTCAAATGATGTTTAAAGC
AGTGATTGAGGTTCTGGATACAGGTCTAAGACCAAAATCAGCTGGAATTA
CACTAGGGTATACAAAAGAGCAAGTAGATCTCATcaggaaattacaaaat
gcaAAGGATCATTATGGATGTCTTGATGTACACCGTCATTGTTCTAAAGA
GGATGTCACTAAATGTTATAGAAGGCTTGCTAAGTTAATTCATCCCGATA
AATGTACTGCTCCTGGAACAGAAGATGCGTTTAAGAAATTGACCACTGCT
CGTGAGGAGTTGATTAAGTTATTCAAATGAACAATAAAGCATCAGCATGG
CAGAATGAAATCAATTAGAATCAAAGTTCTAAGTATAGGGAATACAGAAA
CTGGGAAATCATGCTTGATAAAGAGATACTGTGAGAAAAGATTTGTCAAT
AAGTATTTACCAACAATTGGTGTTGATTTTGGTGTTTCAAATATCAATGT
TGATGATAAAGAACTAAAAGTCAATTTATTTGATTTATCTGGGCATGCAG
CTTTCAAGGAGGTACGGAATGAGTTTTACAAGGACACTCAAGCAGTCATG
TTGGTTTATGACGTCACTAAACAGCATACACTAGATGCTTTAGATTCATG
GATGAATGAAATTAAAAGTTACATAATAAATCCTAAAGATGTTGAGAAAA
TCATCTTCATGGTGTTAGCAAATAAAACTGATAAGTCAGACAGGTGTGTT
AAACACGGTCATGGGAAGTTATGGGCTCAAAAGAATGGCTGTTATTATTT
TGAGACTTCAGCAAATACAGGAGATGGAGTCACCAAAGCTTTTCAAATGA
TGTTTAAAGCAGTGATTGAGGTTCTGGATACAGGTCTAAGACCAAAATCA
GCTGGAATTACACTAGGGTATACAAAAGAGCAAGTAGATCTCATcaggaa
attacaaaatgcaAAGGATCATTATGGATGTCTTGATGTACACCGTCATT
GTTCTAAAGAGGATGTCACTAAATGTTATAGAAGGCTTGCTAAGTTAATT
CATCCCGATAAATGTACTGCTCCTGGAACAGAAGATGCGTTTAAGAAATT
GACCACTGCTCGTGAGGAGTTGATTAAGTTATTCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012655XLOC_012655Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022567-exon-sc0000427-1491911889:218305..218320TCONS_00022567-exon-sc0000427-1491911889:218305..218320Clytia hemisphaericaexon
TCONS_00022567-exon-sc0000427-1510915933:218305..218320TCONS_00022567-exon-sc0000427-1510915933:218305..218320Clytia hemisphaericaexon
TCONS_00022567-exon-sc0000427-1575043694:218305..218320TCONS_00022567-exon-sc0000427-1575043694:218305..218320Clytia hemisphaericaexon
TCONS_00022567-exon-sc0000427-1491911889:229581..229796TCONS_00022567-exon-sc0000427-1491911889:229581..229796Clytia hemisphaericaexon
TCONS_00022567-exon-sc0000427-1510915933:229581..229796TCONS_00022567-exon-sc0000427-1510915933:229581..229796Clytia hemisphaericaexon
TCONS_00022567-exon-sc0000427-1575043694:229581..229796TCONS_00022567-exon-sc0000427-1575043694:229581..229796Clytia hemisphaericaexon
TCONS_00022567-exon-sc0000427-1491911889:230222..230576TCONS_00022567-exon-sc0000427-1491911889:230222..230576Clytia hemisphaericaexon
TCONS_00022567-exon-sc0000427-1510915933:230222..230576TCONS_00022567-exon-sc0000427-1510915933:230222..230576Clytia hemisphaericaexon
TCONS_00022567-exon-sc0000427-1575043694:230222..230576TCONS_00022567-exon-sc0000427-1575043694:230222..230576Clytia hemisphaericaexon
TCONS_00022567-exon-sc0000427-1491911889:230941..231886TCONS_00022567-exon-sc0000427-1491911889:230941..231886Clytia hemisphaericaexon
TCONS_00022567-exon-sc0000427-1510915933:230941..231886TCONS_00022567-exon-sc0000427-1510915933:230941..231886Clytia hemisphaericaexon
TCONS_00022567-exon-sc0000427-1575043694:230941..231886TCONS_00022567-exon-sc0000427-1575043694:230941..231886Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022567-proteinTCONS_00022567-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000427supercontigsc0000427:218305..231886 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.9242	12.7511	9.67835	8.69701	49.3976	36.0071	31.7632	33.026	19.5772	21.033	14.7413	11.35	4.06321	2.16536	6.02537	6.31919	7.38166	8.90689	5.1842	5.75277	6.63239	6.40691	10.6918	9.55282	31.5027	26.2924	9.7735	7.88172	6.03749	6.12095
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00022567 vs. Swiss-Prot (Human)
Match: DJC27 (DnaJ homolog subfamily C member 27 OS=Homo sapiens GN=DNAJC27 PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.235e-94
Identity = 134/261 (51.34%), Postives = 190/261 (72.80%), Query Frame = 2 
Query:   29 KSIRIKVLSIGNTETGKSCLIKRYCEKRFVNKYLPTIGVDFGVSNINVDDKELKVNLFDLSGHAAFKEVRNEFYKDTQAVMLVYDVTKQHTLDALDSWMNEIKSYIINPKDVEKIIFMVLANKTD-KSDRCVKHGHGKLWAQKNGCYYFETSANTGDGVTKAFQMMFKAVIEVLDTGLRPKSAGITLGYTKEQVDLIRKLQNAKDHYGCLDVHRHCSKEDVTKCYRRLAKLIHPDKCTAPGTEDAFKKLTTAREELIKLFK 808
            +S+RIKV+S+GN E GKSC+IKRYCEKRFV+KYL TIG+D+GV+ ++V D+E+KVN+FD++GH  F EVRNEFYKDTQ V+LVYDV ++ + DALD+W+ E+K  +    ++E IIF+V ANK D    RCV    G+LWA+  G  YFETSA TG+G+ + FQ  + +++++ + G +  +   +  +TKEQ D IR+++N+KD +  L V    S+++V K YR+LA L+HPDKC APG+EDAFK +  AR  L+K  K
Sbjct:   13 RSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYISIVDLCENGGKRPTTNSSASFTKEQADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIK 273
The following BLAST results are available for this feature:
BLAST of TCONS_00022567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DJC271.235e-9451.34DnaJ homolog subfamily C member 27 OS=Homo sapiens... [more]
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