TCONS_00022559 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022559
Unique Name	TCONS_00022559
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2182

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000427:91111..96162+
coding sequence from alignment at sc0000427:91111..96162+

transcript sequence

>TCONS_00022559 ID=TCONS_00022559|Name=TCONS_00022559|organism=Clytia hemisphaerica|type=transcript|length=2182bp
AGATCAAGAATCCAAGTTCAAGTACTTTTTACACCAATCGTGCATTATGT
TACCTCAAGCAGAAGAAATGGCAGCAAGCAATCGCAGATTGTCAACACGC
CATTGAAATCGAATCAAAGAGTGTGAAAGGACATTTCTTTTTAGCACAGG
CATATTTAGAACATCAGTTGTATGATGAGGCTATCGCTAATTTCAAACAA
GCACATGAGTTGGCAAAAGATCAGAAATTGAACTTTGGTGATGACATTAC
TGCTGCTTTAAGAACTGCAAAGAAAAAGAGGTGGAACCAACTTGAAGAAA
AGCGTATTGAACAAGAAGTCAGTTTAGAGAAATATTTGAAAGAGCTCATT
ATAGCTGACAAAGAAAAaaaattggatGCCTTAATAAAAGATGACGACAC
TGCATCTGAGGAAGGAGTCAAAATGGTCGACGAAGCTGCGAATAAACGGA
TTGCGGAAGTCACAGATTTGTTTCAACAACTAGATGACAGAAGAAAAAAA
CGAGAAGTGCCAGACCAGTTATGTGGGAAGATCAGTTTTGAGGTGATGAG
AGAACCTGTTATCGCACCGAGCGGTATCACATATGACAAGAAAGATATCG
AAGAACATCTACAGCGTGTTGGACATTTTGATCCTATCACTCGTTCCGAG
CTCAAAGCAACACAACTGATACCAAACTTAGCGATGAAAGAAGTCATCGA
TGAATTCCTTGAACATAACGGATGGGCGGAAGATTATTGAGCGATGTTGT
TGCTAGTTTGTTTGTGTTTTTGTGTGTAGAACAGATATCATTAGTTATCT
ATTGGGAGGTTTTATATTCAGTGGTGGATGTGGAATTACGATACAAGAAG
GGTGATTTTCAATGCTTGGGTACGAATTTCATTCGACTTCCAAGATGGAT
AAACCTGGATAAACCTGCATTTGTTTTGTTATTCGACTGATTCAATTGAA
TGAGATTATCGTGCATTGGATAACGTATGGAGTGTACTTCTGTTGAagat
aaaagaataaaagaataattttccCGAAAACAATCTACAAGGTCTACTGG
AATCGAAAGAAGCTTTCCGAAGGAGACGGAAGTAAACGATCAAGAAAGAC
TGGCTCCCCTGGTCACAGGACCTCACTTAATTACAGGATTATTATACGAC
CCtaaatgaatgaaaatgtcGTTTTGGTTGGACAGAAAATGCCGGTGAAA
GGTTTTTTGGTGAACAAGAGCTTTAATATTGCTGTTGCCAGGCCATTTCT
TATTACttatattacacgtttttttataagaacatccaaaatatttaaag
ccttcggattttcctaactttttgagattcttaacattttcttaatTTCG
CAATttattgagtatttttgtccattttcctaagaaattgggtgttttaa
ggtctgcaaagctttaaaatgttcttaacttgctcttaacattttggcca
tcgtaGCGTTATGTTCtatattgtttgttcttataaaaaaaacgcgtAAT
ACTTTAACGATCAAAAGCTTTTGAGTGAAGTACCTTAAGCTAATTTAATA
AACATAACACAAATGGTTATAGTAGAGGAAAAATTGCCTAAAAGAAGTGA
AGGAGAAGCTTGGTGGCAGAGGTGGTACTAGAAGAGAGAGCAAATCCTTA
TAATTATAGACAATTTTTCATTCGTTTGTTGTTATTTCTTAGCTTTCTAC
TGATTTTATATCTCGGGAGGatagacttttttttttaaataatagtaGTA
GTAGTTGAGAgtgcacgctttttttatatgaataaactttataaaaacat
aaggcttcgatggccaaagtTCTAAGAACAAGCTacgaacatttttagac
tttgcggactctaaaacacccaatttcttaggaacttgcacaaaatggtg
aaaataagaatactttaagaacatttttaagtgtaaaactttttttattt
tgggtgGGATAGAGGTCAAATCTTACTCTATTTTGTATTTACTTTTAATA
GATATATTTAAAACGTTAGGTTCTGATCTATATATCTATGGCCttgtaac
ttttttaaaaaactattaaaactttataaataagaatttttcaattataa
aattgaGCACTTTATGATGCTCGAAATCAGAATGCAAAcgttttgaaaac
tgaaaaagaaaaagtgctttttgaaaaatatt

Run BLAST on NCBI

protein sequence of TCONS_00022559-protein

>TCONS_00022559-protein ID=TCONS_00022559-protein|Name=TCONS_00022559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
IKNPSSSTFYTNRALCYLKQKKWQQAIADCQHAIEIESKSVKGHFFLAQA
YLEHQLYDEAIANFKQAHELAKDQKLNFGDDITAALRTAKKKRWNQLEEK
RIEQEVSLEKYLKELIIADKEKKLDALIKDDDTASEEGVKMVDEAANKRI
AEVTDLFQQLDDRRKKREVPDQLCGKISFEVMREPVIAPSGITYDKKDIE
EHLQRVGHFDPITRSELKATQLIPNLAMKEVIDEFLEHNGWAEDY

Run BLAST on NCBI

transcript from alignment at sc0000427:91111..96162+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022559 ID=TCONS_00022559|Name=TCONS_00022559|organism=Clytia hemisphaerica|type=transcript|length=5052bp|location=Sequence derived from alignment at sc0000427:91111..96162+ (Clytia hemisphaerica)
AGATCAAGAATCCAAGTTCAAGTACTTTTTACACCAATCGTGCATTATGT
TACCTCAAGCAGAAGAAATGGCAGCAAGCAATCGCAGATTGTCAACACGC
CATTGAAATCGAATCAAAGAGTGTGAAAGGACATTTCTTTTTAGCACAGG
CATATTTAGAACATCAGTTGTATGATGAGGCTATCGCTAATTTCAAACAA
GGTAAGAAAGTGAAGGATTTTTCTGTGCTATAATCTACTTCTGGAACGTA
GAGTTCcgtagagttttaacattacaCTAAAGttttaagaccttaggatc
tcagcaCTCAACAGCTTAAAATTTGTCTTATAAGGCTGATAATACAGCCT
AGAACCAAAGAAAAACTTAGCAAGGCACAAAATTCTGCAATGATTTTATC
TTGGAAGACCTTGACTTctcataagttttttttaaccaGAATTTATATCT
CTTTTTCGATAAGAATTCTAATGAATATTGGAGAGGCACATAAGATACGA
AAAGCTTTGAATGCAATATTTATTCTATATTCCTTCCTAGCACATGAGTT
GGCAAAAGATCAGAAATTGAACTTTGGTGATGACATTACTGCTGCTTTAA
GAACTGCAAAGAAAAAGGTAtgtatacagttgactctctctaattcgatt
taaacgggggggggggcaaaaaaaattaacttcgaATTAGATTCGAGTTA
CAGACAGTAACTCCAACTATTTTCCAGCTGAGAAGAccagttcaactttt
tttcgcAATCAGATTAGGTAATAGCTCTTATTTTGCAGTGGAATGTCTTC
TTTCTATATTACGTTCTACATTTTTGATGGTGCAATAAATGATTGCTTCG
TGAATATAGATTGGCTATAATAATAACACTATGTGTCACTTCTCCTTTTT
CCAGAGGTGGAACCAACTTGAAGAAAAGCGTATTGAACAAGAAGTCAGTT
TAGAGAAATATTTGAAAGAGCTCATTATAGCTGACAAAGAAAAGTAAGCt
tcataaaatttttgtttcaatataCATCTATCAACATTTGGCGACAAAAG
GCACACGAAAGGGAATTGAGTTTACAAGgttaaaaaatacaatttttgcg
TATCTCACCATTTTTCCCGTCTTGTCATTTCTCCGCTGTCTTTACTATAA
GGTTTATGTATGGCTTGGTTTGcattcactgacctttatatatccctgga
ccaagctatatccaccatctttgattggagtttttttggaattggtatcC
GAGatgaagccattgcaatgttagaaattaacgtctaacggcgctacatc
atcaaaagtatttgaggaaaagtagaccttgcgctctcgatgcatttaca
ccgctattgagtagtgccgccattagggtaccacttttccaaaaactccg
atcaaagattttgctttgccGGGATTGAGatacttggtccagggatatat
aaaggtcagtgtttgCATCAAATCCCTTGAAATATGAATCGCGATCCTTT
CAAACACActacattcttttattttacttttcatttttatttttcagaaa
attggatGCCTTAATAAAAGATGACGACACTGCATCTGAGGAAGGAGTCA
AAATGGTCGACGAAGCTGCGGTATGtttcttatatattttatatGGACCT
TCTGGGATCATTCATATAGTATATACTCAAAAGAATGTTTGACACCCCTC
CCCctttgtacgcagagaacaatagcaACGAAGTCATTCAAACAATAgac
gtacgcttttgctaatcccctcccccttcactgcgtaggTACTAAGAAAG
GACCATTTCACCAATAAAGTCTTCTTGCTTTCGCTCTTTCGAATGTTGTT
TCTGACTTTCACCAAtggttttgttattttttcattttctttcccCCAAT
TTAGAATAAACGGATTGCGGAAGTCACAGATTTGTTTCAACAACTAGATG
ACAGAAGAAAAGTATATTTTCGATTTCTTAACAATAATTTTTAAGAAATG
ATATCAGTTTGTTATTAGTCGATGGCTGTAAGATTTTGACAATGTGTAAA
ATAGATGAAACTTACCAAGGAGTGCAAGAACTTGTACATAATAAATTTCA
CTGAGTttttgtctaccatttttgttacCATAGAAACGAGAAGTGCCAGA
CCAGTTATGTGGGAAGATCAGTTTTGAGGTGATGAGAGAACCTGTTATCG
CACCGAGCGGTATCACATATGACAAGAAAGATATCGAAGAACATCTACAG
GTTAATTCATCTTAAcctctaccgggtgcgccacaaaaaagtttctctct
ttgaaactaattttctcgaaatctaaaaatttcaaaagaaccattatttt
tccattggaaagaagaaagataaacttaaattttgatgggtcatttatta
aattcgattcattagatcaaaagttatgctcaattgaatgaaaaagtcat
tttcagaaagtgctcgaaaacgttaaaaatcgacctatcaaatttttatt
ttaaatttggcaatcccattagcctttacatgattaagagcgttttcagt
aactaaacacataaattttgaaactgaagggtcaaaagggtttaaaatct
tcatcaaaatcaatttaatctacttttaccgaaattttcttGGTGCttga
ctggataaagtctatgtaggactggatctacctcgaaacctatatttgat
gtatttttatgaattttaccaaatttttgggctttttcgacgaattttct
tcttttcattgaaattcaatcttcctttatataacaaaaggtcatttaga
cagctggttatgatttttaatgactgaagtgaaaatactgatgtatcatg
taattatgcttctgtttaatttgataggtcgatttttaacgtatttgagc
actttccaaaagtaacttttttattcaattgagcataagttttgatctaa
tgaatcgaatttgataaatgacccatcagaatttaagtttatctttcttc
tttccaatgaaagaggaatggttcttttaaaatttttagctttcgagaaa
attattttcaaagagagaaacttttttgtggcgcacccggtatatatttt
tttccatgaCAATGGAGGAAGTGAATCTTTAAGAATCCTACATTTACTAG
AAATTGACAAACAGAGCAAGAAATTTTTACCATCCTGATCCCTGACCATG
AAAGAAAGTGACATCACCTGCAAATATTTTGATTGCATTGTATATCGCGG
AGTTTAACTACTTGATTAAAAGAACGCCAAATTATGCCTGCTcgctttta
atttttaaagtaaCAGATTGATGATTAAAATTCTATGACTAGgaaacaaa
acttttgaaattctaaATGGTTAAAAGTGATTagattttgattgatttga
aagaaatttcttggAAGTACACCTAAATCTTTTTACAATACACGGCAAAA
TTaaacgtttttcttttgtttgttttctttaCAGCGTGTTGGACATTTTG
ATCCTATCACTCGTTCCGAGCTCAAAGCAACACAACTGATACCAAACTTA
GCGATGAAAGAAGTCATCGATGAATTCCTTGAACATAACGGATGGGCGGA
AGATTATTGAGCGATGTTGTTGCTAGTTTGTTTGTGTTTTTGTGTGTAGA
ACAGATATCATTAGTTATCTATTGGGAGGTTTTATATTCAGTGGTGGATG
TGGAATTACGATACAAGAAGGGTGATTTTCAATGCTTGGGTACGAATTTC
ATTCGACTTCCAAGATGGATAAACCTGGATAAACCTGCATTTGTTTTGTT
ATTCGACTGATTCAATTGAATGAGATTATCGTGCATTGGATAACGTATGG
AGTGTACTTCTGTTGAagataaaagaataaaagaataattttccCGAAAA
CAATCTACAAGGTCTACTGGAATCGAAAGAAGCTTTCCGAAGGAGACGGA
AGTAAACGATCAAGAAAGACTGGCTCCCCTGGTCACAGGACCTCACTTAA
TTACAGGATTATTATACGACCCtaaatgaatgaaaatgtcGTTTTGGTTG
GACAGAAAATGCCGGTGAAAGGTTTTTTGGTGAACAAGAGCTTTAATATT
GCTGTTGCCAGGCCATTTCTTATTACttatattacacgtttttttataag
aacatccaaaatatttaaagccttcggattttcctaactttttgagattc
ttaacattttcttaatTTCGCAATttattgagtatttttgtccattttcc
taagaaattgggtgttttaaggtctgcaaagctttaaaatgttcttaact
tgctcttaacattttggccatcgtaGCGTTATGTTCtatattgtttgttc
ttataaaaaaaacgcgtAATACTTTAACGATCAAAAGCTTTTGAGTGAAG
TACCTTAAGCTAATTTAATAAACATAACACAAATGGTTATAGTAGAGGAA
AAATTGCCTAAAAGAAGTGAAGGAGAAGCTTGGTGGCAGAGGTGGTACTA
GAAGAGAGAGCAAATCCTTATAATTATAGACAATTTTTCATTCGTTTGTT
GTTATTTCTTAGCTTTCTACTGATTTTATATCTCGGGAGGatagactttt
ttttttaaataatagtaGTAGTAGTTGAGAgtgcacgctttttttatatg
aataaactttataaaaacataaggcttcgatggccaaagtTCTAAGAACA
AGCTacgaacatttttagactttgcggactctaaaacacccaatttctta
ggaacttgcacaaaatggtgaaaataagaatactttaagaacatttttaa
gtgtaaaactttttttattttgggtgGGATAGAGGTCAAATCTTACTCTA
TTTTGTATTTACTTTTAATAGATATATTTAAAACGTTAGGTTCTGATCTA
TATATCTATGGCCttgtaacttttttaaaaaactattaaaactttataaa
taagaatttttcaattataaaattgaGCACTTTATGATGCTCGAAATCAG
AATGCAAAcgttttgaaaactgaaaaagaaaaagtgctttttgaaaaata
tt

Coding sequence (CDS) from alignment at sc0000427:91111..96162+

>TCONS_00022559 ID=TCONS_00022559|Name=TCONS_00022559|organism=Clytia hemisphaerica|type=CDS|length=5166bp|location=Sequence derived from alignment at sc0000427:91111..96162+ (Clytia hemisphaerica)
ATCAAGAATCCAAGTTCAAGTACTTTTTACACCAATCGTGCATTATGTTA
CCTCAAGCAGAAGAAATGGCAGCAAGCAATCGCAGATTGTCAACACGCCA
TTGAAATCGAATCAAAGAGTGTGAAAGGACATTTCTTTTTAGCACAGGCA
TATTTAGAACATCAGTTGTATGATGAGGCTATCGCTAATTTCAAACAAGC
ACATGAGTTGGCAAAAGATCAGAAATTGAACTTTGGTGATGACATTACTG
CTGCTTTAAGAACTGCAAAGAAAAAGAGGTGGAACCAACTTGAAGAAAAG
CGTATTGAACAAGAAGTCAGTTTAGAGAAATATTTGAAAGAGCTCATTAT
AGCTGACAAAGAAAAaaaattggatGCCTTAATAAAAGATGACGACACTG
CATCTGAGGAAGGAGTCAAAATGGTCGACGAAGCTGCGAATAAACGGATT
GCGGAAGTCACAGATTTGTTTCAACAACTAGATGACAGAAGAAAAAAACG
AGAAGTGCCAGACCAGTTATGTGGGAAGATCAGTTTTGAGGTGATGAGAG
AACCTGTTATCGCACCGAGCGGTATCACATATGACAAGAAAGATATCGAA
GAACATCTACAGCGTGTTGGACATTTTGATCCTATCACTCGTTCCGAGCT
CAAAGCAACACAACTGATACCAAACTTAGCGATGAAAGAAGTCATCGATG
AATTCCTTGAACATAACGGATGGGCGGAAGATTATTGAATCAAGAATCCA
AGTTCAAGTACTTTTTACACCAATCGTGCATTATGTTACCTCAAGCAGAA
GAAATGGCAGCAAGCAATCGCAGATTGTCAACACGCCATTGAAATCGAAT
CAAAGAGTGTGAAAGGACATTTCTTTTTAGCACAGGCATATTTAGAACAT
CAGTTGTATGATGAGGCTATCGCTAATTTCAAACAAGCACATGAGTTGGC
AAAAGATCAGAAATTGAACTTTGGTGATGACATTACTGCTGCTTTAAGAA
CTGCAAAGAAAAAGAGGTGGAACCAACTTGAAGAAAAGCGTATTGAACAA
GAAGTCAGTTTAGAGAAATATTTGAAAGAGCTCATTATAGCTGACAAAGA
AAAaaaattggatGCCTTAATAAAAGATGACGACACTGCATCTGAGGAAG
GAGTCAAAATGGTCGACGAAGCTGCGAATAAACGGATTGCGGAAGTCACA
GATTTGTTTCAACAACTAGATGACAGAAGAAAAAAACGAGAAGTGCCAGA
CCAGTTATGTGGGAAGATCAGTTTTGAGGTGATGAGAGAACCTGTTATCG
CACCGAGCGGTATCACATATGACAAGAAAGATATCGAAGAACATCTACAG
CGTGTTGGACATTTTGATCCTATCACTCGTTCCGAGCTCAAAGCAACACA
ACTGATACCAAACTTAGCGATGAAAGAAGTCATCGATGAATTCCTTGAAC
ATAACGGATGGGCGGAAGATTATTGAATCAAGAATCCAAGTTCAAGTACT
TTTTACACCAATCGTGCATTATGTTACCTCAAGCAGAAGAAATGGCAGCA
AGCAATCGCAGATTGTCAACACGCCATTGAAATCGAATCAAAGAGTGTGA
AAGGACATTTCTTTTTAGCACAGGCATATTTAGAACATCAGTTGTATGAT
GAGGCTATCGCTAATTTCAAACAAGCACATGAGTTGGCAAAAGATCAGAA
ATTGAACTTTGGTGATGACATTACTGCTGCTTTAAGAACTGCAAAGAAAA
AGAGGTGGAACCAACTTGAAGAAAAGCGTATTGAACAAGAAGTCAGTTTA
GAGAAATATTTGAAAGAGCTCATTATAGCTGACAAAGAAAAaaaattgga
tGCCTTAATAAAAGATGACGACACTGCATCTGAGGAAGGAGTCAAAATGG
TCGACGAAGCTGCGAATAAACGGATTGCGGAAGTCACAGATTTGTTTCAA
CAACTAGATGACAGAAGAAAAAAACGAGAAGTGCCAGACCAGTTATGTGG
GAAGATCAGTTTTGAGGTGATGAGAGAACCTGTTATCGCACCGAGCGGTA
TCACATATGACAAGAAAGATATCGAAGAACATCTACAGCGTGTTGGACAT
TTTGATCCTATCACTCGTTCCGAGCTCAAAGCAACACAACTGATACCAAA
CTTAGCGATGAAAGAAGTCATCGATGAATTCCTTGAACATAACGGATGGG
CGGAAGATTATTGAATCAAGAATCCAAGTTCAAGTACTTTTTACACCAAT
CGTGCATTATGTTACCTCAAGCAGAAGAAATGGCAGCAAGCAATCGCAGA
TTGTCAACACGCCATTGAAATCGAATCAAAGAGTGTGAAAGGACATTTCT
TTTTAGCACAGGCATATTTAGAACATCAGTTGTATGATGAGGCTATCGCT
AATTTCAAACAAGCACATGAGTTGGCAAAAGATCAGAAATTGAACTTTGG
TGATGACATTACTGCTGCTTTAAGAACTGCAAAGAAAAAGAGGTGGAACC
AACTTGAAGAAAAGCGTATTGAACAAGAAGTCAGTTTAGAGAAATATTTG
AAAGAGCTCATTATAGCTGACAAAGAAAAaaaattggatGCCTTAATAAA
AGATGACGACACTGCATCTGAGGAAGGAGTCAAAATGGTCGACGAAGCTG
CGAATAAACGGATTGCGGAAGTCACAGATTTGTTTCAACAACTAGATGAC
AGAAGAAAAAAACGAGAAGTGCCAGACCAGTTATGTGGGAAGATCAGTTT
TGAGGTGATGAGAGAACCTGTTATCGCACCGAGCGGTATCACATATGACA
AGAAAGATATCGAAGAACATCTACAGCGTGTTGGACATTTTGATCCTATC
ACTCGTTCCGAGCTCAAAGCAACACAACTGATACCAAACTTAGCGATGAA
AGAAGTCATCGATGAATTCCTTGAACATAACGGATGGGCGGAAGATTATT
GAATCAAGAATCCAAGTTCAAGTACTTTTTACACCAATCGTGCATTATGT
TACCTCAAGCAGAAGAAATGGCAGCAAGCAATCGCAGATTGTCAACACGC
CATTGAAATCGAATCAAAGAGTGTGAAAGGACATTTCTTTTTAGCACAGG
CATATTTAGAACATCAGTTGTATGATGAGGCTATCGCTAATTTCAAACAA
GCACATGAGTTGGCAAAAGATCAGAAATTGAACTTTGGTGATGACATTAC
TGCTGCTTTAAGAACTGCAAAGAAAAAGAGGTGGAACCAACTTGAAGAAA
AGCGTATTGAACAAGAAGTCAGTTTAGAGAAATATTTGAAAGAGCTCATT
ATAGCTGACAAAGAAAAaaaattggatGCCTTAATAAAAGATGACGACAC
TGCATCTGAGGAAGGAGTCAAAATGGTCGACGAAGCTGCGAATAAACGGA
TTGCGGAAGTCACAGATTTGTTTCAACAACTAGATGACAGAAGAAAAAAA
CGAGAAGTGCCAGACCAGTTATGTGGGAAGATCAGTTTTGAGGTGATGAG
AGAACCTGTTATCGCACCGAGCGGTATCACATATGACAAGAAAGATATCG
AAGAACATCTACAGCGTGTTGGACATTTTGATCCTATCACTCGTTCCGAG
CTCAAAGCAACACAACTGATACCAAACTTAGCGATGAAAGAAGTCATCGA
TGAATTCCTTGAACATAACGGATGGGCGGAAGATTATTGAATCAAGAATC
CAAGTTCAAGTACTTTTTACACCAATCGTGCATTATGTTACCTCAAGCAG
AAGAAATGGCAGCAAGCAATCGCAGATTGTCAACACGCCATTGAAATCGA
ATCAAAGAGTGTGAAAGGACATTTCTTTTTAGCACAGGCATATTTAGAAC
ATCAGTTGTATGATGAGGCTATCGCTAATTTCAAACAAGCACATGAGTTG
GCAAAAGATCAGAAATTGAACTTTGGTGATGACATTACTGCTGCTTTAAG
AACTGCAAAGAAAAAGAGGTGGAACCAACTTGAAGAAAAGCGTATTGAAC
AAGAAGTCAGTTTAGAGAAATATTTGAAAGAGCTCATTATAGCTGACAAA
GAAAAaaaattggatGCCTTAATAAAAGATGACGACACTGCATCTGAGGA
AGGAGTCAAAATGGTCGACGAAGCTGCGAATAAACGGATTGCGGAAGTCA
CAGATTTGTTTCAACAACTAGATGACAGAAGAAAAAAACGAGAAGTGCCA
GACCAGTTATGTGGGAAGATCAGTTTTGAGGTGATGAGAGAACCTGTTAT
CGCACCGAGCGGTATCACATATGACAAGAAAGATATCGAAGAACATCTAC
AGCGTGTTGGACATTTTGATCCTATCACTCGTTCCGAGCTCAAAGCAACA
CAACTGATACCAAACTTAGCGATGAAAGAAGTCATCGATGAATTCCTTGA
ACATAACGGATGGGCGGAAGATTATTGAATCAAGAATCCAAGTTCAAGTA
CTTTTTACACCAATCGTGCATTATGTTACCTCAAGCAGAAGAAATGGCAG
CAAGCAATCGCAGATTGTCAACACGCCATTGAAATCGAATCAAAGAGTGT
GAAAGGACATTTCTTTTTAGCACAGGCATATTTAGAACATCAGTTGTATG
ATGAGGCTATCGCTAATTTCAAACAAGCACATGAGTTGGCAAAAGATCAG
AAATTGAACTTTGGTGATGACATTACTGCTGCTTTAAGAACTGCAAAGAA
AAAGAGGTGGAACCAACTTGAAGAAAAGCGTATTGAACAAGAAGTCAGTT
TAGAGAAATATTTGAAAGAGCTCATTATAGCTGACAAAGAAAAaaaattg
gatGCCTTAATAAAAGATGACGACACTGCATCTGAGGAAGGAGTCAAAAT
GGTCGACGAAGCTGCGAATAAACGGATTGCGGAAGTCACAGATTTGTTTC
AACAACTAGATGACAGAAGAAAAAAACGAGAAGTGCCAGACCAGTTATGT
GGGAAGATCAGTTTTGAGGTGATGAGAGAACCTGTTATCGCACCGAGCGG
TATCACATATGACAAGAAAGATATCGAAGAACATCTACAGCGTGTTGGAC
ATTTTGATCCTATCACTCGTTCCGAGCTCAAAGCAACACAACTGATACCA
AACTTAGCGATGAAAGAAGTCATCGATGAATTCCTTGAACATAACGGATG
GGCGGAAGATTATTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012649	XLOC_012649	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00022559-protein	TCONS_00022559-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000427	supercontig	sc0000427:91111..96162 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.8589	13.554	11.68	8.71937	38.2759	29.2556	29.0153	32.9623	26.5409	25.526	18.3725	18.4347	16.4795	14.0962	16.3622	15.9207	25.4869	23.5346	15.4977	27.0141	19.9222	19.5413	26.841	26.7459	16.5839	19.0172	30.0909	30.8821	26.0528	25.6181

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR003613	Ubox_domain
IPR011990	TPR-like_helical_dom
IPR013083	Znf_RING/FYVE/PHD
IPR013026	TPR-contain_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0004842	ubiquitin-protein transferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0016567	protein ubiquitination

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity

Blast

[Close]

BLAST of TCONS_00022559 vs. Swiss-Prot (Human)
Match: CHIP (E3 ubiquitin-protein ligase CHIP OS=Homo sapiens GN=STUB1 PE=1 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 8.966e-96
Identity = 145/249 (58.23%), Postives = 190/249 (76.31%), Query Frame = 3

Query:    6 KNPSSSTFYTNRALCYLKQKKWQQAIADCQHAIEIESKSVKGHFFLAQAYLEHQLYDEAIANFKQAHELAKDQKLNFGDDITAALRTAKKKRWNQLEEKRIEQEVSLEKYLKELIIADKEKKLDALIKD-----DDTASEEGVKMVDEAANKRIAEVTDLFQQLDDRRKKREVPDQLCGKISFEVMREPVIAPSGITYDKKDIEEHLQRVGHFDPITRSELKATQLIPNLAMKEVIDEFLEHNGWAEDY 737
            +NP  + +YTNRALCYLK ++ +QA+ADC+ A+E++ +SVK HFFL Q  LE + YDEAIAN ++A+ LAK+Q+LNFGDDI +ALR AKKKRWN +EE+RI QE  L  YL  LI A++E++L+   ++     DD+        ++   +K +A++ +LF Q+D++RKKR++PD LCGKISFE+MREP I PSGITYD+KDIEEHLQRVGHFDP+TRS L   QLIPNLAMKEVID F+  NGW EDY
Sbjct:   55 RNPLVAVYYTNRALCYLKMQQHEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLSRLIAAERERELEECQRNHEGDEDDSHVRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQEQLIPNLAMKEVIDAFISENGWVEDY 303

The following BLAST results are available for this feature:

BLAST of TCONS_00022559 vs. Swiss-Prot (Human)

BLAST of TCONS_00022559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CHIP	8.966e-96	58.23	E3 ubiquitin-protein ligase CHIP OS=Homo sapiens G...	[more]

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TCONS_00022559 (transcript) - C. hemisphaerica