TCONS_00022537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022537
Unique NameTCONS_00022537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022537 ID=TCONS_00022537|Name=TCONS_00022537|organism=Clytia hemisphaerica|type=transcript|length=1531bp
tatagaATTACATTGAATAAGATTATgcaatactaaaatcaattattAAA
AATAATGGCGTTATCATTTGTTAGGAGTCTGATTAGCAGAGAGGCTGCTG
TTCTTACACCAATCTTATCAAGGATGTTTTCAATGTCTTCAGTAACAGGT
ATAAAGGCTGCAGAACTAACCAAAGACAATATGCCACCAAGCCTTGGATG
TCCTGTCTGTAGTAGGGGTATCACTTTTACTAAAAACgatgttttgtttt
tatctcAATTCATGACTCCCGAAGGTTACATGATTAGTAGAAGGAAAACa
gGAGTTTGCAAAAAACAACAACGTAGAATCTTCAAATATATTCATATTGC
AAGAAGAGAAGgcttATTACCAAGGAAACCACCAGTTGATGGCGGCGATC
CACCAGAGTATGGTCAAAAGTCCAAATCTCTCACCAAGAAAACATACAAA
ACCAGATTCCTGTGACGAACGAActgatatttttttgcaatctattttta
tctttctaagtgaaaaaaataaagatggctTCTCGAAGATTCTTTGTTGG
TGGTAACTGGAAAATGAATTGTGACGTCAACAAGGCGAACAGTATCCTTG
AGTTCCTGAACTCAGGTGAAATGAGCAAAGACACTGAAGTTGTTGTATCA
CCACCATCGCTGTACGTCTCATACATCAAACAGAATCTGAAAGCCGACAA
TGTCACTGTTGCTGTCCAAAATTGTCATACAGCTACCTCAGGTGCTTTCA
CTGGTGAGATCTCAGCCGAAATGGCTGCAGATGTTGGTTGCCAATGGGTC
ATTTTGGGTCACTCGGAACGCCGACATAAGTTTGGTGAAAGTGACGAGTT
AGTTGGTCAGAAAGTCAAACATGTGTTGGAGGCCACTAAATTGGGAGTTA
TTGCGTGTATAGGAGAACTTTTGGAAGAACGTGAAAAGAATGAAACCATG
AGTGTTTGTGCTCGACAGATGAAAGCTATTGCCGATAACGTCAGTGATTG
GTCTAAAGTTGTCATTGCATATGAGCCTGTATGGGCCATTGGCACTGGTA
AAGTGGCCACTCCCGACCAAGCACAAGAGGTCCATGATGAAGTCCGTAAA
TGGTTGCAAGCTAATGTAAGCAAAGAGGTGGCTGACTCGACACGTATCTT
GTATGGTGGATCAGTAAATGCAGCGAATTGCAAGGAATTATCCAAGAAAC
CTGATGTAGATGGATTCTTAGTTGGTGGAGCTTCATTGAAACCAGATTTC
GTTCAAATTGTCAATGCCAAATTGTAAATTGTGGATACATTAGATCTGTA
GACCCATAGATAATAAGACAACGAATTTTGCTATGTTGACAATGACTTCG
ATTTATGCATTTCTTTTGAGATAATATCTTCTTTCAAAAATCATACCAAG
TTAAAtagaatttttacaaaaaaaaaattagaatagatatttatttttta
taatgaatGAAACTTTGTgcttttcttttattcttttgttttcttaaaGA
TGGATAATATTAAGAACTTGCAACACCAAAT
Run BLAST on NCBI

protein sequence of TCONS_00022537-protein

>TCONS_00022537-protein ID=TCONS_00022537-protein|Name=TCONS_00022537-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MASRRFFVGGNWKMNCDVNKANSILEFLNSGEMSKDTEVVVSPPSLYVSY
IKQNLKADNVTVAVQNCHTATSGAFTGEISAEMAADVGCQWVILGHSERR
HKFGESDELVGQKVKHVLEATKLGVIACIGELLEEREKNETMSVCARQMK
AIADNVSDWSKVVIAYEPVWAIGTGKVATPDQAQEVHDEVRKWLQANVSK
EVADSTRILYGGSVNAANCKELSKKPDVDGFLVGGASLKPDFVQIVNAKL
Run BLAST on NCBI

transcript from alignment at sc0000424:18090..21485-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022537 ID=TCONS_00022537|Name=TCONS_00022537|organism=Clytia hemisphaerica|type=transcript|length=3396bp|location=Sequence derived from alignment at sc0000424:18090..21485- (Clytia hemisphaerica)
TATAGAATTACATTGAATAAGATTATGCAATACTAAAATCAATTATTAAA
AATAATGGCGTTATCATTTGTTAGGAGTCTGATTAGCAGAGAGGCTGCTG
TTCTTACACCAATCTTATCAAGGATGTTTTCAATGTCTTCAGTAACAGGT
TAGTTTTATTGGTTTTCGATCATCCTTGACACTCTAATGGTCTCATATAA
TAATTTGCAACTCAGGGCATCTTTCAACTCTTGGTTGAGAAAATATTGAC
GAGGTCGTTAAGTAAATGATGATCTTACATGACTAAACAGTCTTTCAATG
TAACTATAGTTTTTGGTGTTCACTTTTTTAAGATTTGCAAGTTTCAGGCT
CGTTGTTTCAGGCTTTCACTCAAACTAAAACTTAAAAACAAGTTATTATT
GTAAGTTTGTGATTTTCCATTCAGGTAAAAAAATATCACTGAAAAATCGT
AATCTATCAAATTAATTGATTTTTTCTTAGGTATAAAGGCTGCAGAACTA
ACCAAAGACAATATGCCACCAAGCCTTGGATGTCCTGTCTGTAGTAGGGG
TATCACTTTTACTAAAAACGTATGGATGCTTTATTTTGATGTATTATTAT
CATTAAAATATCTGGTTAATTAAAAATGTCCTTGTGTTTGATAACAGTTC
AAAAACTATCAGTTTATAATTTTGATAAGTATAACTTCTCAACTTTTTTT
CATTTTTGGAAATATTTTTTCAGCTTTTTATAAATTTTACCAAATTTTTA
CTTCGCAAGATTGTATAATAAACTTCCTTCTACTCACTCTTAAAAATCAT
TATCATCCATTCAGGAAGTAAAAGCATCCTATCTGTGGTCATACAAACTG
TAACATAATATCAATGCTTGATCATATTTTTTTGTTTTTCCAGGATGTTT
TGTTTTTATCTCAATTCATGACTCCCGAAGGTTACATGATTAGTAGAAGG
AAAACAGGTTTGTATTTTTGAAATTTGACTGATTTTTTGACTACATCAAT
TTAACTCAAAGGTATTGTAACATGTGCAGGTTTTGTAATTTGAAAAATAC
AAACGTTTGCTCAATCACACTCCTAAAATCTTGAGTTTTGCTATTTTAGA
TTGTGTGATAAGGCCTGCTATCCACTTTTAAATGATTTAGTTTAGATTTA
TGGTGTGTGTGGTTGATCGCACTCCTCAGAGAGTATAGGTGTGTTTGGAG
GCGTGTGGGGTCATTACTCCCTCTAGGGAAGGAAGACTTCCTCTTAGTTA
CTAACCTTAGAACTCTCTATGCAAACACGTCAAGGAATCAGGTTATAATA
AAATGGCGATAAATTTAGTTGCAACTGACAAGCGATCTCATTAAAAGTTG
TTTACTTTTTTCCAGGAGTTTGCAAAAAACAACAACGTAGAATCTTCAAA
TATATTCATATTGCAAGAAGAGAAGGTTTGCTTTCCCTTTTTATATGTAA
CAATTAGTTAGTTTCTCATCATACAGCCTCATTACTGAGTTATAAATCTA
GCTAATTTTTGTTTGACTCGTTTATTCAAACTAGAATCCTTTACTAACAA
CGGCTCTAAATACATGTCCCTTTTTATACTCCGGGTATTTTTCAAGCACT
TTTCCACCACCGTTTTATTCAGTGGCAAAAACTTAATTTTAAATTGAGTT
TTCAAACTCAATTTTGGGGAGAAAGAAATGTTAAAGTTAATAATGGAAAG
TAGCGAAATGACAGTACAAAAACTTGAAAGAAAATCAACTCAATGTATTG
TAATGAGTCTAACAAAATTTTCATAATCAAGTAAGAATTTGTAGGCTAAG
ATACATGAAAACACTAATTTAGGACCAACCATGGTGGCCAACTTTTAAAT
ATCTGCTGCATTGAACCTCAACTTTCAGACTAAAACGGTTGTAAAGAAAA
GTGCTTGGAAAATACCTTGAAGGAGGCATTGGTATTTTTGAAGAGGGTAA
ACAATTTTTTTTTCAGGCTTATTACCAAGGAAACCACCAGTTGATGGCGG
CGATCCACCAGAGTATGGTCAAAAGTCCAAATCTCTCACCAAGAAAACAT
ACAAAACCAGATTCCTGTGACGAACGAACTGATATTTTTTTGCAATCTAT
TTTTGTAAATATTTTTTAGTCAAATATGATATAATTTCATTGTCTTTTTT
TTCTTCTTATTAGAATCATTTTCATGCCTGCTACCGTTTCAAAGGCTTCA
ACATTATAAACCTCTAGTATTTCAGTAATGTAATGTTCGGTAATATCATT
GTTTGTTCAGGTTTGTTCAGATCTGGACTTATCTACTGAATTCCGCTCGT
TGAGGTAGCATAAACAATGAAGAAAAATTCCACTGATTATTATAATTTTC
CATTTTTTTTACAGATCTTTCTAAGTGAAAAAAATAAAGATGGCTTCTCG
AAGATTCTTTGTTGGTGGTAACTGGAAAATGAATTGTGACGTCAACAAGG
CGAACAGTATCCTTGAGTTCCTGAACTCAGGTGAAATGAGCAAAGACACT
GAAGTTGTTGTATCACCACCATCGCTGTACGTCTCATACATCAAACAGAA
TCTGAAAGCCGACAATGTCACTGTTGCTGTCCAAAATTGTCATACAGCTA
CCTCAGGTGCTTTCACTGGTGAGATCTCAGCCGAAATGGCTGCAGATGTT
GGTTGCCAATGGGTCATTTTGGGTCACTCGGAACGCCGACATAAGTTTGG
TGAAAGTGACGAGTTAGTTGGTCAGAAAGTCAAACATGTGTTGGAGGCCA
CTAAATTGGGAGTTATTGCGTGTATAGGAGAACTTTTGGAAGAACGTGAA
AAGAATGAAACCATGAGTGTTTGTGCTCGACAGATGAAAGCTATTGCCGA
TAACGTCAGTGATTGGTCTAAAGTTGTCATTGCATATGAGCCTGTATGGG
CCATTGGCACTGGTAAAGTGGCCACTCCCGACCAAGCACAAGAGGTCCAT
GATGAAGTCCGTAAATGGTTGCAAGCTAATGTAAGCAAAGAGGTGGCTGA
CTCGACACGTATCTTGTATGGTGGATCAGTAAATGCAGCGAATTGCAAGG
AATTATCCAAGAAACCTGATGTAGATGGATTCTTAGTTGGTGGAGCTTCA
TTGAAACCAGATTTCGTTCAAATTGTCAATGCCAAATTGTAAATTGTGGA
TACATTAGATCTGTAGACCCATAGATAATAAGACAACGAATTTTGCTATG
TTGACAATGACTTCGATTTATGCATTTCTTTTGAGATAATATCTTCTTTC
AAAAATCATACCAAGTTAAATAGAATTTTTACAAAAAAAAAATTAGAATA
GATATTTATTTTTTATAATGAATGAAACTTTGTGCTTTTCTTTTATTCTT
TTGTTTTCTTAAAGATGGATAATATTAAGAACTTGCAACACCAAAT

Coding sequence (CDS) from alignment at sc0000424:18090..21485-

>TCONS_00022537 ID=TCONS_00022537|Name=TCONS_00022537|organism=Clytia hemisphaerica|type=CDS|length=753bp|location=Sequence derived from alignment at sc0000424:18090..21485- (Clytia hemisphaerica)
ATGGCTTCTCGAAGATTCTTTGTTGGTGGTAACTGGAAAATGAATTGTGA
CGTCAACAAGGCGAACAGTATCCTTGAGTTCCTGAACTCAGGTGAAATGA
GCAAAGACACTGAAGTTGTTGTATCACCACCATCGCTGTACGTCTCATAC
ATCAAACAGAATCTGAAAGCCGACAATGTCACTGTTGCTGTCCAAAATTG
TCATACAGCTACCTCAGGTGCTTTCACTGGTGAGATCTCAGCCGAAATGG
CTGCAGATGTTGGTTGCCAATGGGTCATTTTGGGTCACTCGGAACGCCGA
CATAAGTTTGGTGAAAGTGACGAGTTAGTTGGTCAGAAAGTCAAACATGT
GTTGGAGGCCACTAAATTGGGAGTTATTGCGTGTATAGGAGAACTTTTGG
AAGAACGTGAAAAGAATGAAACCATGAGTGTTTGTGCTCGACAGATGAAA
GCTATTGCCGATAACGTCAGTGATTGGTCTAAAGTTGTCATTGCATATGA
GCCTGTATGGGCCATTGGCACTGGTAAAGTGGCCACTCCCGACCAAGCAC
AAGAGGTCCATGATGAAGTCCGTAAATGGTTGCAAGCTAATGTAAGCAAA
GAGGTGGCTGACTCGACACGTATCTTGTATGGTGGATCAGTAAATGCAGC
GAATTGCAAGGAATTATCCAAGAAACCTGATGTAGATGGATTCTTAGTTG
GTGGAGCTTCATTGAAACCAGATTTCGTTCAAATTGTCAATGCCAAATTG
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012633XLOC_012633Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022537-exon-sc0000424-1575043694:21338..21485TCONS_00022537-exon-sc0000424-1575043694:21338..21485Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1575043694:20917..21005TCONS_00022537-exon-sc0000424-1575043694:20917..21005Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1575043694:20529..20592TCONS_00022537-exon-sc0000424-1575043694:20529..20592Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1575043694:20061..20120TCONS_00022537-exon-sc0000424-1575043694:20061..20120Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1575043694:19382..19519TCONS_00022537-exon-sc0000424-1575043694:19382..19519Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1575043694:18090..19121TCONS_00022537-exon-sc0000424-1575043694:18090..19121Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1510915933:21338..21485TCONS_00022537-exon-sc0000424-1510915933:21338..21485Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1510915933:20917..21005TCONS_00022537-exon-sc0000424-1510915933:20917..21005Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1510915933:20529..20592TCONS_00022537-exon-sc0000424-1510915933:20529..20592Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1510915933:20061..20120TCONS_00022537-exon-sc0000424-1510915933:20061..20120Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1510915933:19382..19519TCONS_00022537-exon-sc0000424-1510915933:19382..19519Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1510915933:18090..19121TCONS_00022537-exon-sc0000424-1510915933:18090..19121Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1491911889:21338..21485TCONS_00022537-exon-sc0000424-1491911889:21338..21485Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1491911889:20917..21005TCONS_00022537-exon-sc0000424-1491911889:20917..21005Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1491911889:20529..20592TCONS_00022537-exon-sc0000424-1491911889:20529..20592Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1491911889:20061..20120TCONS_00022537-exon-sc0000424-1491911889:20061..20120Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1491911889:19382..19519TCONS_00022537-exon-sc0000424-1491911889:19382..19519Clytia hemisphaericaexon
TCONS_00022537-exon-sc0000424-1491911889:18090..19121TCONS_00022537-exon-sc0000424-1491911889:18090..19121Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022537-proteinTCONS_00022537-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:18090..21485 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
217.905	220.973	212.059	231.417	84.9711	69.2666	86.8177	90.549	93.3543	82.5513	70.8427	69.1325	49.3121	50.0217	92.292	84.4715	175.129	158.448	34.7917	38.733	69.9285	73.2238	108.463	94.0675	92.4749	80.6513	74.2579	48.1301	70.5579	66.7333
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000652Triosephosphate_isomerase
IPR013785Aldolase_TIM
IPR020861Triosephosphate_isomerase_AS
IPR022896TrioseP_Isoase_bac/euk
Vocabulary: Molecular Function
TermDefinition
GO:0004807triose-phosphate isomerase activity
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0006096glycolytic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006096 glycolytic process
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004807 triose-phosphate isomerase activity
Blast
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BLAST of TCONS_00022537 vs. Swiss-Prot (Human)
Match: TPIS (Triosephosphate isomerase OS=Homo sapiens GN=TPI1 PE=1 SV=3)

HSP 1 Score: 305.064 bits (780), Expect = 1.835e-99
Identity = 157/247 (63.56%), Postives = 185/247 (74.90%), Query Frame = 3 
Query:  531 SRRFFVGGNWKMNCDVNKANSILEFLNSGEMSKDTEXXXXXXXXXXXXIKQNLKADNVTVAVQNCHTATSGAFTGEISAEMAADVGCQWVILGHSERRHKFGESDELVGQKVKHVLEATKLGVIACIGELLEEREKNETMSVCARQMKAIADNVSDWSKVVIAYEPVWAIGTGKVATPDQAQEVHDEVRKWLQANVSKEVADSTRILYGGSVNAANCKELSKKPDVDGFLVGGASLKPDFVQIVNAK 1271
            SR+FFVGGNWKMN        ++  LN+ ++  DTEVV +PP+ Y+ + +Q L    + VA QNC+  T+GAFTGEIS  M  D G  WV+LGHSERRH FGESDEL+GQKV H L A  LGVIACIGE L+ERE   T  V   Q K IADNV DWSKVV+AYEPVWAIGTGK ATP QAQEVH+++R WL++NVS  VA STRI+YGGSV  A CKEL+ +PDVDGFLVGGASLKP+FV I+NAK
Sbjct:   41 SRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDP-KIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHAL-AEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAK 285
The following BLAST results are available for this feature:
BLAST of TCONS_00022537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TPIS1.835e-9963.56Triosephosphate isomerase OS=Homo sapiens GN=TPI1 ... [more]
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