TCONS_00022474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022474
Unique NameTCONS_00022474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4140

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022474 ID=TCONS_00022474|Name=TCONS_00022474|organism=Clytia hemisphaerica|type=transcript|length=4140bp
CACAcggtttgtttactttgttcAAAAATGTTCGAAGAACAGTTTTAAAC
AGTTGAAACTGTAAAAaagaaagctttttaaaaaaaattaggcaaaTTTA
AGTccttatgacgtcatcatatgTTTCGCTATTTGACAAGTTTACGGAAT
GGAGATAATGATTGTGCTGAACAGCACCGAAACGAGGCTACTCAAGATGG
CGGCGAAAGGAATGGTGGAaagcaaggaaaatttcaaactttgtgCTCGT
TTGCAATCAAGAAGACATTCAAGTGgttgttctttttctttctaaCTGTA
GTATTCCTAACTGGACAGTACATCCTAGCCGGGAAACTGATCAACAACGA
TATTTTTCCACCAAGAGAACAACAAGGATATTTCTATACGAAACAACGCC
GAAACGTTAATTCCAATACGTCAAATGAAGGTCAAGGAATTCAAAAACTA
CAATTTCCATCGACTTATCATGTCTTTGGGGTATTGAAACTACCGTATGG
GAACATCAATGAACCTTTTGAAGCATGGTACTCGAGAGATGAGAAGATGA
GCAGAATAGATTATTATGGAGGGATGGATAGGACTTACCAGCGAGAAGAT
TTATCCAGTTATGGATTCGGTGCAAAAGTCATCCcagaattttcagaaaa
aaagaaaaagatattcCGTGGTTGTTTACATCACGTAGGGACCAGAAAGT
TTCCAATCAAAGCACAAAGTATTATTCCAAATGAAAACGCATTTAAATTT
AGCGGAAAATGCACATTCAACAAAACAATACCTTGCTATAAATGGAAACA
CACTTTCAAAGTTTTAACAAAAATCAACAGTTACACCCTTTACACCACAA
GAGACCAACCGACCATCCCTCTCCGATATGATATGATGGGTTATGATACA
TTATTGGCATCTTACTATGATAAATACATCTTAATGTATACCAAATTTGA
ACCATGGAAATTCGATTTCTCAGTCTTCGAAATACCCTCCGACGTCCACT
GTTTCGATCTGAGCGGCGAGTCAGAAGCTAGTGAAACGACTGTATCTAGC
TTCAATCCAATGCTTGAATTCATGTCAACTCATGCCCTATCCAGTGAACC
GATAAACAACGACAATACAACAAAGGGGACATCAGATGTTGTAAAACCAA
AAGACGATTTAAAGGATCTGATAACGAATTCAGCGGGCGTTGGCGGGAGT
GGTGTTAACCATTTTGAATTTGTGGTTGAGAAGATTTTTACAGATTACAA
GAACCTTTTTCAGAAGGAATATAAGAATGAGAAGGAACATGTTAAAAGGA
AAGATATATTCAGACATAATTTGAGGTACATTAATCACAAGAATCGGCAA
AATTTGACATATAAGTTACATCTGAACCATTTCGCGGATATCACAGACGA
AGAAATGAAACAGTACAGAGGTCTTCTCAACGAGAGTTATGTTGATCATA
AAGCTGAACCTTTCAAAGCACCTCAAATCAATTATCACGGCATTGCAGTG
CCTAAATCCTTAGATTGGCGAAAATATGGTGCCATATCGGAGGTGAGTAG
CCAGGGTATATGTGGATCATGTTATGCATATGCAGTGACAGGAGCTGTCG
AAGCTGGCCATTTCATAAAGACGGGGAAACGTATCAAATTATCAGAACAG
CAAATAGTAGATTGTTCATGGGGGTTCGGTAATCGTGGTTGTAAAGGGGG
ATATCCTTACCGTGCCATGCAATGGAGCATTCAACACGGTGGAATTGCAA
CAAGTGAAAGTTATGGAAAATATCTAGCTCAGGAAGGTTATTGTCATTTC
GGGAACGTGACACACGGAGCAAAAGTTGAAGGATATTATAACGTGACTAA
AGGGAATGTCACGCAACTCAAACACGCTCTTGCTTTGTATGGTCCTGTAA
CCGTTCTCATAAACACACGCCCGAAATCATTCAAATTCTACGATAATGGA
GTTTACTACGACAAAGAATGTGATGACCGTTTGGATCATGCAGCACTGGT
AGTTGGATATGGAACTTCTGATACAGGTGAAAGTTACTGGTTAATTAAGA
ATTCATGGTCAGTTTCTTGGGGACATAAAGGTTTTATGAAGATTGCTATG
CGGAATGATAATTGTGGTGTCACTCAAAAACCTGTCGTTGTTAAAGTCAA
GTGAAAGAAAAATTACTAGTGGAACAATCGAAACTCATGGTGAATACCCA
AAAGCATGACCTTTCAAAATGATGATTTTGATACCCAGAGTGGGTACTTG
GGCAAAAAGTTCCCTTGCGGGTACCTTTTTGGGGGAAGTTTGGGAAGAAT
AGTTATTAATTTTTGAGAAAATTTGTCTCACGTAGCATTTTTAGAACCTC
AATGGACCACCCCACCCCATCGCTCGGCAAAGTAATTCCCCCCCCGGGTT
GCGATGTCACTCAAAAATCAGTCAAAAGAAAGGAAATTTGTGGAAAGATC
ACAATTCGTGATCCATATCTAAAGTAGTATTGCTTCATAAAAATTACCTA
TCTAAAAGATAACTGTGACAACACTTAAAAACCGTTCTTGTCAAAGTCAA
ATATACCGGAAATTTCTGGACTGATTTAAACCCTTTCCGTGCCGATGTCG
GCATATGCCGACATGAGCATTTTCAATCTCCTTGCCATTGTCGGGATTTA
CCGACATACGAAGTTTCGACCTATTTGCCGAAAATTTATCATTTTTTACA
AAATTTTTGTATTAGGTGGTTTGAAATGAAAAAAATGAATCGTTACAAAC
TTTTCTATGTTGAAAAATAACTATTCTACAATGTTTAACTCAAAATTATA
GTCCTTGGCTAATACTTCATATATTATTCAGAAAATTAAGTCACAATCGC
TACTTTTTGCCCATGTCTTTTTTTCCCGTGGCAAATAGGTTGAACCTTAA
AAAATACGCATGGCAGTTAAAGGGTTAAAGAACACTATAATCAAGAATGT
CCTTGCTGAAAAGTTTCTGGAATGATCGAATTTTGGTTCTTGGAGAAATT
TCCGGGCTAATCGAATTGGTAAAACCTATGCTCCGGTGAGGCTTATTTTG
TTCTCCTAAAACTCATAAGATATACAAAGACTCATTCTTCCATATtcaac
ataaacataaacagaTATGGaaagaattacaaaataaaGGATTAGTAAAA
CATCATTTTATATGTATTGACCATACGTTCgaaacagataaaaaataccg
gagagaaagaagaaaaaaacatctaaaaatatttcactgcCATTTGGTGT
tgttttttctcgaatttttttctcttctaccTGCTTACGACATTTTTCCT
ACCTAGCCAACTCGCTAAAGAAAGTTGTCACACAGCGAATGTCATAGATG
AGAGCACAATTCGTAGGAGTGAGAAAAAGACCAGGAGTGATAAAACCATT
GTATTAatttaatctcaaaaaattgaagattaaAATCACTTACTCAACTT
CATTGTAGTTGGAAAAAGGTTTGCGAAAGTGTTTCTTAATTGACAAGAGT
ACTGGTGACAAACTTCTAACCTTCCCGAataaaaagatttggaaatagTC
CCCTTGTTCGTATTCTTTTCCAAAATATCATATATTTTGACACTACACTT
ACCCACCTACCCACGTAAAAGGTTACCGAAAATCTTTTAAAGCAGTCCAT
GAAAAAACTCAGAAAAAGTCCTCTAAGTTGTCTTTGGTTCATGGTGCAGT
AATCGAGCAAtcgacataaaaaataatttacctcaaATTTAGATTTTCTG
AATTTCGAGGGTCACTTTTATCGATATTTGCTCCGTGTTTTACACACATG
GAACTCAAAATAagaactcgaacccagtcccttagtatgatttttttatg
attctgttggAGCTCAGCTCGCTTTTATATGAATAGCTATGATAGCTCTC
ACAAAAGTAATAACGTCCATTAGTAGAATCATAAAGTAGTGCAAGTGGCT
GTGGGTATATGAGATTGACAAGAATATTGACGTTTTTAATaagatgtttt
taattttttttaggtaGATActtattttgccatttttgtaaattgtaaat
aatgacaaatatttgatgaaaaaaattatttgtctTGACTATTATTTTAT
TTGAAGAACACAGCTGTATATGTGGCTTAGAATTAGGCCT
Run BLAST on NCBI

transcript from alignment at sc0000421:149251..161275-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022474 ID=TCONS_00022474|Name=TCONS_00022474|organism=Clytia hemisphaerica|type=transcript|length=12025bp|location=Sequence derived from alignment at sc0000421:149251..161275- (Clytia hemisphaerica)
CACACGGTTTGTTTACTTTGTTCAAAAATGTTCGAAGAACAGTTTTAAAC
AGTTGAAACTGTAAAAAAGAAAGCTTTTTAAAAAAAATTAGGCAAATTTA
AGTCCTTATGACGTCATCATATGTTTCGCTATTTGACAAGTTTACGGAAT
GGAGATAATGATTGTGCTGAACAGCACCGAAACGAGGCTACTCAAGATGG
CGGCGAAAGGAATGGTGGAAAGCAAGGAAAATTTCAAACTTTGTGCTCGT
TTGCAATCAAGAAGACATTCAAGTGGTTGTTCTTTTTCTTTCTAACTGGT
AAGTTTTTGTACAACGTATTGGCCATAAAAAAGAAAACCATAGCAGAAAA
AGAAATTTTTTTCCATGAGAGAAGACTAATAGTAGAGATAGCAGACAAGA
AATGGCCAAGCCACCTCATTGAAGACTATGTGAAATCCAATGAAAAATCT
TTCAGATCTTACTGCTTTGTTCACCTTTAAGATGGTCATACAGACAAGGC
AGCAAGACTCAATTTCTCAACCATTTTCTATTTTCAAGCAGTAGTATTCC
TAACTGGACAGTACATCCTAGCCGGGAAACTGATCAACAACGATATTTTT
CCACCAAGAGAACAACAAGGATATTTCTATACGAAACAACGCCGAAACGT
TAATTCCAATACGTCAAATGAAGGTCAAGGAATTCAAAAACTACAATTTC
CATCGACTTATCATGTCTTTGGGGTATTGAAACTACCGTATGGGAACATC
AATGAACCTTTTGAAGCATGGTACTCGAGAGATGAGAAGATGAGCAGAAT
AGATTATTATGGAGGTTTGTTTGAATACTTTTTTATCAAATACCTTATTT
CTTAGGCTGGTAAAGAGATCTTCGGTAGCTTGAAAAGTTTCACCGAAAGT
TTCAATGATCTTCTGAAAAATTGAGTTTTCATGAACATTAGAGAGTTTAT
GCATGGCTATGTGAGTTATCATATATTGATCTGTTAATACCCTGACTATA
ACTGAGGACGATGGTTAATCAAAGTNAATTTCAAACTTTGTGCTCGTTTG
CAATCAAGAAGACATTCAAGTGGTTGTTCTTTTTCTTTCTAACTGGTAAG
TTTTTGTACAACGTATTGGCCATAAAAAAGAAAACCATAGCAGAAAAAGA
AATTTTTTTCCATGAGAGAAGACTAATAGTAGAGATAGCAGACAAGAAAT
GGCCAAGCCACCTCATTGAAGACTATGTGAAATCCAATGAAAAATCTTTC
AGATCTTACTGCTTTGTTCACCTTTAAGATGGTCATACAGACAAGGCAGC
AAGACTCAATTTCTCAACCATTTTCTATTTTCAAGCAGTAGTATTCCTAA
CTGGACAGTACATCCTAGCCGGGAAACTGATCAACAACGATATTTTTCCA
CCAAGAGAACAACAAGGATATTTCTATACGAAACAACGCCGAAACGTTAA
TTCCAATACGTCAAATGAAGGTCAAGGAATTCAAAAACTACAATTTCCAT
CGACTTATCATGTCTTTGGGGTATTGAAACTACCGTATGGGAACATCAAT
GAACCTTTTGAAGCATGGTACTCGAGAGATGAGAAGATGAGCAGAATAGA
TTATTATGGAGGTTTGTTTGAATACTTTTTTATCAAATATGGTTAATCAA
AGCTATTTCACCGTCCACGATCTTACCCCTTAAGATTCTAATCTACGACT
CCTCCTTATGATCAACTCACCGCTTGATCTTTGAATTTCTGTGTTGTTTT
TTAAGGTTTTCGGGACTATTTAGGCATTTTTTCATTTTTCAGAACCTTAT
AAGATTGTTTTGAATCTTTTGAGATTTTGGAGTGGATTGTTACTCGCTTT
TAAACAAAAAAAAACCCAGTAAACTGGAAACATCCCAATAAACAAAACAG
TTTATTACTTGGATATCCAGACTATGTTTCAGATGCAAAAAAGAAAATAC
ATAAAAGAAAAAAAAATACATTAACAGGGTTTTAAATTTTATGAAAAAAT
AATCCGTTGAAAGCTTTTTCTCTCCAAAAATAACTTAAATCATTCTTCAA
TCAGTGATCGTAACTGGAATATTAAAATTAGAATATACCGAAAACAACAT
CATTATTCTTTTTGAGAACAGATGTAAAAACGTTTGTTTTCACATAAGAA
ATTCACGCGAAGAAAAATGAGGCACGTGTCATGGTGCTTTGTACTCGTAT
GTAACCAAAGGAAAAAGGAACCCATGAGTTATTAGGCGTAGGGCGTAGGG
CGTAGGGCGTTAAGCATTAGGCGGGTCACATTCATGGAGTTTGCTTTGCT
TTTGATAGGGCTGGCGAATTCTTAGCTATCCCATTGTATTGATTAGTGTG
AATATGTACTTGAGGCGGCGAATCGAATAATTTTTATGTTTTTTTATAAG
AACATCAAAATATTTTGAAGCATTCCGATGTTCAAAACATATTCTTATCT
TCATCATTTTGAGAGTAATTTGGCAATCTTCCCAAAAATTAGGTGTTTTA
GAGCCCCCAAAGGATTAAGATGTTCTTAACTTGTTCTTAATATTACTGTC
GTGGAAGCATTGTGTGTTCCTATATAGATCGCTCTTATAAAAAACGTGTA
GGGGTGCTAACAATGTTTAGTGGGGTGACAAATTTATACTATGTTTGAAT
TCGAAAGGGATGGATAGGACTTACCAGCGAGAAGATTTATCCAGTTATGG
ATTCGGTGCAAAAGTCATCCCAGAATTTTCAGAAAAAAAGAAAAAGATAT
TCCGTGGTTGTTTACATCACGTAGGGACCAGAAAGTTTCCAATCAAAGCA
CAAAGTATTATTCCAAATGAAAACGCATTTAAAGTAAGTATCTAAATTTA
GTACGCATTCTTTATAATAAAAACATCCCGAATTTTTTACTGAATTGTCT
TTATTTTTGAGTTTTAAATCTAAAATTTTTTTTAAAATATTCTTAATTTC
ATCATTTTGCCAGGATTTTTGTGCAGTTTCATACGAAATTGGGTGTTTTA
GGGTCCATAAGGCCTTAAAATGCTCTTAACTTGTTCTTAATATTTTGGCC
ATGAAAGCCTTATGTTCTTATATAGTTTGTTTTCATAAAAAACGTGTAAT
TTTTTCTTTCAAAACTCCTTTTCGATTTCTCTATAATGATTTTGAAAGCA
GGTATGTGAAAGAGGTTCCCAACCATTGACCATTAAACTGAAAATCAGGA
TAATTTCCTTAAAGTAATAACACTGGCTCGACGAGTATCTAGGAAGCCAG
TGTAACACTTGAAGATTCTTATTCCACACTTCATCAATGTAGCCGCCAGG
AGCGCTAGTTGACACGTCTTATTGAAATAGAGAATTTAATCTTCAAAATT
CCAATTTTTCACGTTTACAGTTTAGCGGAAAATGCACATTCAACAAAACA
ATACCTTGCTATAAATGGAAACACACTTTCAAAGTTTTAACAAAAATCAA
CAGTTACACCCTTTACACCACAAGAGACCAACCGACCATCCCTCTCCGAT
ATGATATGATGGGTTATGATACATTATTGGCATCTTACTATGATAAATAC
ATCTTAATGTATACCAAATTTGAACCATGGAAATTCGATTTCTCAGTCTT
CGAAATACCCTCCGGTAAGTTACATTACATCACAGACCCGGTAGGATCCT
TCCCTGTTGAAAATCTTTCCAAAATATCGTCCCAGTGGGAAGTTTTTGTC
CCCGCTGAAAATATTCAAAAACCACCTAAATGCAAAAAACTGTTTTTAGT
GTACTTTCGACGACCTGATACAAGGGATTCCGGTGCAGGAACCATTCAGT
TCCCAGCTGGCTCACAAGGTTGTTTCTACGTTCATCTAACGTTATATGGA
CATTGATACTACCAGTCCACAAATGTTGATATTTTTTTATACTGGTTGAT
TTTCAGAGCTCTCAATGATGATGGGTTTATTTGGAAAAATAAAGTGTAAA
AAAAAAAAAATCTTTGAGTTTTTTTACCTTTTACTAGACGTCCACTGTTT
CGATCTGAGCGGCGAGTCAGAAGCTAGTGAAACGACTGTATCTAGCTTCA
ATCCAATGCTTGAATTCATGTCAACTCATGCCCTATCCAGTGAACCGATA
AACAACGACAATACAACAAAGGGGACATCAGATGTTGTAAAACCAAAAGA
CGATTTAAAGGATCTGATAACGAATTCAGCGGGCGTTGGCGGGAGTGGTG
TTAACCATTTTGAATTTGTGGTTGAGAAGATTTTTACAGATTACAAGAAC
CTTTTTCAGAAGGAATATAAGAATGAGAAGGAACATGTTAAAAGGAAAGA
TATATTCAGACATAATTTGAGGTAAGCATGCTTCTTTTGATTGAATAAAT
GAAAAATATGCCTCTAAATAACGGATACGATCGAGGAAACGGGTCATTGC
CCGCTAATTAGAAGTGTTCGCCTTTTAGAGACTTATGATCTAGGACCTTA
GACTAATAAGGCCATGTGTCGTAAACATAATATTTCAATCTTAAGTACTA
TCTAGAGGTACTAGAACATAGAAGAATGAGGTTCACTCAAGGCTACCATC
GTCTTTTCTGGTATGTTTTGATATCAAAACACTATTTCAGGATGCGTGCA
TTCATTCTATCATTCTGTTGAAAAGCTCCGAGCCTTCTAACATATCGGGG
ACATGAAACTTGGTACTCTAATATATGTTTACTCTTTATTATCAAAGCAA
ATGAATCGTTTCATTCTTCGTTTCTTCTCAATTTCTCTACTGTTATAGGT
ACATTAATCACAAGAATCGGCAAAATTTGACATATAAGTTACATCTGAAC
CATTTCGCGGATATCACAGACGAAGAAATGAAACAGTACAGAGGTCTTCT
CAACGAGAGTTATGTTGATCATAAAGCTGAACCTTTCAAAGCACCTCAAA
TCAATTATCACGGCATTGCAGTGCCTAAATCCTTAGATTGGCGAAAATAT
GGTATGCCAGCTACTGGCCATCTCTAACAGATTAACACTCCTTTGCAGAG
GTCTATGATTCAGCCTAAGAACAACTTGTCACTCTTTAAACTGTTTACCT
TTTAAATAAATAGCAAATCTTCTTTCAAATGGAATAAAAAAGACATCAGT
CGTCCCTACAGTAGATTTCACGGACGAGACCTAAAATCTTTTGAGGTCCG
TGAAATCCCAAAAGTATGAAAGTATAATGAACTTACGACTTCACGTTTAA
AGGTGCCATATCGGAGGTGAGTAGCCAGGGTATATGTGGATCATGTTATG
CATATGCAGTGACAGGAGCTGTCGAAGCTGGCCATTTCATAAAGGTAGGT
TGTCGGATGATAGNAGCCAGGGTATATGTGGATCATGTTATGCATATGCA
GTGACAGGAGCTGTCGAAGCTGGCCATTTCATAAAGGTAGGTTGTCGGAT
GATAGAATGTGTGTGCCCTGAAAAATGAAATCTTGATTTAAGATTTATGT
TGAGGGTGCTTACCCATGACAAATGTCCTTGAAGGTATTTAGTGGTTTTC
ATAAATCTAATTCTTCCTTTTTTTATGTTCTACAGGCATTGATTGGATAT
CTCATGAATAGTAATTAAAAGGACTAGTATTCTTGAATTCCGTCTGAGAG
GCCTGAGTTCGATACCTATTCCATGTCAATGCACCTCCTCTTAAATTACA
CCTTTAAACCAGCTACCAGAACGAATGCATTTTTATATAGATTTAGAATT
TTGTCGTATTTTATTGAATTTAAGAGTTGTCCAGTAAAATTTGACAGAAT
AATGAATTCTCACAGCAAATAATATTCTAACATGTTTAAGCATCAAATAG
TGTCGCTAATATTGCCGAAATTTGACCAAAGTCTTACTTGGACTTTTCTT
GAAAAAATCTGAATATTTGGGGTGGAGGATATAACATTTATTTTGGAAAT
TTACCCCCCATAGAGCAGGTCCAACTCCCCGAACAAACATTATACATGAC
TCGCACCCCCCCCGCCTGAGGGGGGAGCTACAAAATTTGTCATATAAGAG
GTGGGAGCTGCTTGTTTTTCCCGACAGGCGGGGGGGGGCTCTATCTTGNG
GACCTAAAATTTTATCAGGCTGGGGGGACCTTGTTCTCAGGGGGGACCTA
AATTTGGCGGGGGGACCTAGAACCCCAGTCGGAGCCATGTTAGTTGACCC
CCTGAACACTCAAAATTACCCTCAAACGGAACAAAATTACCCCCTAACAG
AGATGTTTAACCCCCGGACAAGGAAAATTTGCAGATTTTTCTCTACACCG
GAAACTATATCCTCCACCCCCCCCATGTACGAACATTTTCTGGAAGAGCC
TCTTTCAACATCATCATTATTCTTTAGACGGGGAAACGTATCAAATTATC
AGAACAGCAAATAGTAGATTGTTCATGGGGGTTCGGTAATCGTGGTTGTA
AAGGGGGATATCCTTACCGTGCCATGCAATGGAGCATTCAACACGGTGGA
ATTGCAACAAGTGAAAGTTATGGAAAATATCTAGCTCAGGTAAGTTCACC
ACTTGGGGAGGGAGATATAACCGAAGGCTAGAGGCAAATCACTTACGTAG
GATTTGAAGCCACTTAAACTTCCACTTATATTACAGGGGTGTCTCACAGC
CCCGGTGAAACTTTTTCCTACAGAAGGGATAAAAATTGTGATTGAAATCT
TTTTAGGGATAAAAATTCTATTACTCCAAGGTAAAATAATTCCATAGGGA
TGGTTTTGGAACATTGAATTTCGAATGGGGACGAAATCAAAGTCAATTTC
TCAGTGGGGCTGAAATTCTAGGGTATTTTTCCAACCGGGGACAAAATTTT
TGCCAAATTTTATAGTGGGGCTGGGGCCCCCAGTGGGTCTGTGACACAGA
GGTGTTATATTGAACTGCCCATGTTGTTTTCACGCAGATGCTATTTTGAA
AGCATACATCTCGGATTTTAACGGATATCATATAAGTTGATGCTTTCACC
ATATACAAGCAAAAGATTCCATTGTCTTTCTTTTTCTTCAATTAATGCTC
AATTTTTTTTGGAAGAATGGAGTCGTGTAAAGTAGACTTTAGAAAGAGAG
AGAGAGGAAAAAATAATCTTTTGCCTGAACCCTCAGAAGAGAAAAAAGTT
TCCGCAGTCTCATAACCATATGGCACAGGTTTCGAAAAAAAAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTCAATCCAGGAAGGTTATTGTCATTT
CGGGAACGTGACACACGGAGCAAAAGTTGAAGGATATTATAACGTGACTA
AAGGGAATGTCACGCAACTCAAACACGCTCTTGCTTTGTATGGTCCTGTA
ACCGTTCTCATAAACACACGCCCGAAATCATTCAAATTCTACGATAATGG
AGTTTACTACGACAAAGAATGTGGTACGTAATATCTTTGTAGCTCAAACT
GGTACACAGTTCCTTAGGTCCCATTTTTAAAGGTCAAGCTCATTCCCAGT
TCCTTAAAGTCTGTCTCAAAATAATTTGCAGCTGAGACAAAAATGGGTTG
TAACTTTTGATAGAATTCGAATTAAGTTATGATTTTGTGCTCATTGAAAA
GATATTTGTGAGTGGAATATTATCAAGCAAAAATAAATTTGAAAAAACAA
GAAAAATGAAAATGAAAAATGAAGAAGTTGATTTTTTTCTTCTTCTTTTT
TTATTTTCATTTTTCTTTATTTTTCAATTTTTTTTACAGTTATTTTTTGC
CTCAGCTGCAAATTATTTTGAGACGCATATTTATGATTCTAAACTCTTTT
TCCTCTATGTGTATATTTCACCAATATTCAACCTCGCTTTTGCTATCGAA
ATTTTGTACATATAATGATGCATTCCCTCGTATTACTGTTTTTCCAAATA
TTTTTAGATGACCGTTTGGATCATGCAGCACTGGTAGTTGGATATGGAAC
TTCTGATACAGGTGAAAGTTACTGGTTAATTAAGAATTCATGGTCAGTTT
CTTGGGGACATAAAGGTTTTATGAAGATTGCTATGCGGAATGATAATTGT
GGTGTCACTCAAAAACCTGTCGTTGTTAAAGTCAAGTGAAAGAAAAATTA
CTAGTGGAACAATCGAAACTCATGGTGAATACCCAAAAGCATGACCTTTC
AAAATGATGATTTTGATACCCAGAGTGGGTACTTGGGCAAAAAGTTCCCT
TGCGGGTACCTTTTTGGGGGAAGTTTGGGAAGAATAGTTATTAATTTTTG
AGAAAATTTGTCTCACGTAGCATTTTTAGAACCTCAATGGACCACCCCAC
CCCATCGCTCGGCAAAGTAATTCCCCCCCCGGGTTGCGATGTCACTCAAA
AATCAGTCAAAAGAAAGGAAATTTGTGGAAAGATCACAATTCGTGATCCA
TATCTAAAGTAGTATTGCTTCATAAAAATTACCTATCTAAAAGATAACTG
TGACAACACTTAAAAACCGTTCTTGTCAAAGTCAAATATACCGGAAATTT
CTGGACTGATTTAAACCCTTTCCGTGCCGATGTCGGCATATGCCGACATG
AGCATTTTCAATCTCCTTGCCATTGTCGGGATTTACCGACATACGAAGTT
TCGACCTATTTGCCGAAAATTTATCATTTTTTACAAAATTTTTGTATTAG
GTGGTTTGAAATGAAAAAAATGAATCGTTACAAACTTTTCTATGTTGAAA
AATAACTATTCTACAATGTTTAACTCAAAATTATAGTCCTTGGCTAATAC
TTCATATATTATTCAGAAAATTAAGTCACAATCGCTACTTTTTGCCCATG
TCTTTTTTTCCCGTGGCAAATAGGTTGAACCTTAAAAAATACGCATGGCA
GTTAAAGGGTTAAAGAACACTATAATCAAGAATGTCCTTGCTGAAAAGTT
TCTGGAATGATCGAATTTTGGTTCTTGGAGAAATTTCCGGGCTAATCGAA
TTGGTAAAACCTATGCTCCGGTGAGGCTTATTTTGTTCTCCTAAAACTCA
TAAGATATACAAAGACTCATTCTTCCATATTCAACATAAACATAAACAGA
TATGGAAAGAATTACAAAATAAAGGATTAGTAAAACATCATTTTATATGT
ATTGACCATACGTTCGAAACAGATAAAAAATACCGGAGAGAAAGAAGAAA
AAAACATCTAAAAATATTTCACTGCCATTTGGTGTTGTTTTTTCTCGAAT
TTTTTTCTCTTCTACCTGCTTACGACATTTTTCCTACCTAGCCAACTCGC
TAAAGAAAGTTGTCACACAGCGAATGTCATAGATGAGAGCACAATTCGTA
GGAGTGAGAAAAAGACCAGGAGTGATAAAACCATTGTATTAATTTAATCT
CAAAAAATTGAAGATTAAAATCACTTACTCAACTTCATTGTAGTTGGAAA
AAGGTTTGCGAAAGTGTTTCTTAATTGACAAGAGTACTGGTGACAAACTT
CTAACCTTCCCGAATAAAAAGATTTGGAAATAGTCCCCTTGTTCGTATTC
TTTTCCAAAATATCATATATTTTGACACTACACTTACCCACCTACCCACG
TAAAAGGTTACCGAAAATCTTTTAAAGCAGTCCATGAAAAAACTCAGAAA
AAGTCCTCTAAGTTGTCTTTGGTTCATGGTGCAGTAATCGAGCAATCGAC
ATAAAAAATAATTTACCTCAAATTTAGATTTTCTGAATTTCGAGGGTCAC
TTTTATCGATATTTGCTCCGTGTTTTACACACATGGAACTCAAAATAAGA
ACTCGAACCCAGTCCCTTAGTATGATTTTTTTATGATTCTGTTGGAGCTC
AGCTCGCTTTTATATGAATAGCTATGATAGCTCTCACAAAAGTAATAACG
TCCATTAGTAGAATCATAAAGTAGTGCAAGTGGCTGTGGGTATATGAGAT
TGACAAGAATATTGACGTTTTTAATAAGATGTTTTTAATTTTTTTTAGGT
AGATACTTATTTTGCCATTTTTGTAAATTGTAAATAATGACAAATATTTG
ATGAAAAAAATTATTTGTCTTGACTATTATTTTATTTGAAGAACACAGCT
GTATATGTGGCTTAGAATTAGGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012603XLOC_012603Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022474-exon-sc0000421-1575043694:160978..161275TCONS_00022474-exon-sc0000421-1575043694:160978..161275Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1575043694:159665..159937TCONS_00022474-exon-sc0000421-1575043694:159665..159937Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1575043694:158443..158618TCONS_00022474-exon-sc0000421-1575043694:158443..158618Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1575043694:157662..157905TCONS_00022474-exon-sc0000421-1575043694:157662..157905Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1575043694:156955..157288TCONS_00022474-exon-sc0000421-1575043694:156955..157288Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1575043694:156325..156527TCONS_00022474-exon-sc0000421-1575043694:156325..156527Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1575043694:155982..156073TCONS_00022474-exon-sc0000421-1575043694:155982..156073Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1575043694:154787..154948TCONS_00022474-exon-sc0000421-1575043694:154787..154948Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1575043694:151903..152092TCONS_00022474-exon-sc0000421-1575043694:151903..152092Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1575043694:149251..151418TCONS_00022474-exon-sc0000421-1575043694:149251..151418Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1510915933:160978..161275TCONS_00022474-exon-sc0000421-1510915933:160978..161275Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1510915933:159665..159937TCONS_00022474-exon-sc0000421-1510915933:159665..159937Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1510915933:158443..158618TCONS_00022474-exon-sc0000421-1510915933:158443..158618Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1510915933:157662..157905TCONS_00022474-exon-sc0000421-1510915933:157662..157905Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1510915933:156955..157288TCONS_00022474-exon-sc0000421-1510915933:156955..157288Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1510915933:156325..156527TCONS_00022474-exon-sc0000421-1510915933:156325..156527Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1510915933:155982..156073TCONS_00022474-exon-sc0000421-1510915933:155982..156073Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1510915933:154787..154948TCONS_00022474-exon-sc0000421-1510915933:154787..154948Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1510915933:151903..152092TCONS_00022474-exon-sc0000421-1510915933:151903..152092Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1510915933:149251..151418TCONS_00022474-exon-sc0000421-1510915933:149251..151418Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1491911889:160978..161275TCONS_00022474-exon-sc0000421-1491911889:160978..161275Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1491911889:159665..159937TCONS_00022474-exon-sc0000421-1491911889:159665..159937Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1491911889:158443..158618TCONS_00022474-exon-sc0000421-1491911889:158443..158618Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1491911889:157662..157905TCONS_00022474-exon-sc0000421-1491911889:157662..157905Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1491911889:156955..157288TCONS_00022474-exon-sc0000421-1491911889:156955..157288Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1491911889:156325..156527TCONS_00022474-exon-sc0000421-1491911889:156325..156527Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1491911889:155982..156073TCONS_00022474-exon-sc0000421-1491911889:155982..156073Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1491911889:154787..154948TCONS_00022474-exon-sc0000421-1491911889:154787..154948Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1491911889:151903..152092TCONS_00022474-exon-sc0000421-1491911889:151903..152092Clytia hemisphaericaexon
TCONS_00022474-exon-sc0000421-1491911889:149251..151418TCONS_00022474-exon-sc0000421-1491911889:149251..151418Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000421supercontigsc0000421:149251..161275 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00769315	0	0	0	0.0861336	0.976124	0.219367	0.851971	0.338123	0.972976	0.0173183	1.39576	0.0120031	0.528116	0.357871	0.137783	1.8713	0.00829995	0.00896876	1.75884	8.10068e-05	1.13397	0.999242	0.00324858	0.00523512	2.3949e-10	0.207767	0.017802	0
Blast
[Close]
BLAST of TCONS_00022474 vs. Swiss-Prot (Human)
Match: CATK (Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.095e-55
Identity = 118/310 (38.06%), Postives = 178/310 (57.42%), Query Frame = 1 
Query: 1216 EFVVEKIFTDYKNLFQKEYKNEKEHVKRKDIFRHNLRYINHKNRQNL----TYKLHLNHFADITDEEMKQ-YRGLLNESYVDHKAEPFKAPQINYHGIAVPKSLDWRKYGAISEVSSQGICGSCYAYAVTGAVEAGHFIKTGKRIKLSEQQIVDCSWGFGNRGCKGGYPYRAMQWSIQHGGIATSESYGKYLAQEGYCHFGNVTHGAKVEGYYNVTKGNVTQLKHALALYGPVTVLINTRPKSFKFYDNGVYYDKECD-DRLDHAALVVGYGTSDTGESYWLIKNSWSVSWGHKGFMKIAM-RNDNCGVT 2124
            E +++  +  +K   +K+Y N+ + + R+ I+  NL+YI+  N +      TY+L +NH  D+T EE+ Q   GL          +    P+  + G A P S+D+RK G ++ V +QG CGSC+A++  GA+E     KTGK + LS Q +VDC     N GC GGY   A Q+  ++ GI + ++Y  Y+ QE  C +      AK  GY  + +GN   LK A+A  GPV+V I+    SF+FY  GVYYD+ C+ D L+HA L VGYG    G  +W+IKNSW  +WG+KG++ +A  +N+ CG+ 
Sbjct:   19 EEILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSHSRSNDTLYIPE--WEGRA-PDSVDYRKKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV--SENDGCGGGYMTNAFQYVQKNRGIDSEDAY-PYVGQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGI-QKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIA 321
The following BLAST results are available for this feature:
BLAST of TCONS_00022474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATK2.095e-5538.06Cathepsin K OS=Homo sapiens GN=CTSK PE=1 SV=1[more]
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