TCONS_00022442 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022442
Unique NameTCONS_00022442
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length570

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022442 ID=TCONS_00022442|Name=TCONS_00022442|organism=Clytia hemisphaerica|type=transcript|length=570bp
GGAGCTAGAATACGATGATAGAGAGGCTCTTTATAATTTTGTTGGacgtg
ttttgatttttattctcATATATTCCTATACTACGTTTATAGTGTTATAG
TGTagtagaaaataaataaaacattacGATATTACAAAAGAAGAAGTAGA
GAaaaagaagagaagagaggTTTTGACTTTCTAAAAAGTGCTTTGGAAAG
GAACTTTTTAAGGATCAACCTGAGGTTCTCTGTGTTACAGTAGATTTCAT
ATTTAATAACTGATATTGCTGGTtataaatgtttttgtttggcTCGGAGG
AAGAGATTTTTAAACTACAATTGCAATGGTTATGATGATATATGGTGATG
TTTTTATGTATGTATGCATAGAAAATTATGGTTTCTTTAAAAGGAGAATG
TTTGGATTGTATTTGTGTTTTTATATGAAACACACAGTGTTtcaaaactt
gatttaaaaatgtAAAGCCTCGacaaatattaagaaaaggtcAGAGAATA
GGAATAAGTTCTTTGAGGGTAATAGTTTTAACTTAAGATATAAATAAACT
GGCCTAAATTGATCAGTTAG
Run BLAST on NCBI

transcript from alignment at sc0000417:221079..221648

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022442 ID=TCONS_00022442|Name=TCONS_00022442|organism=Clytia hemisphaerica|type=transcript|length=570bp|location=Sequence derived from alignment at sc0000417:221079..221648 (Clytia hemisphaerica)
CTAACTGATCAATTTAGGCCAGTTTATTTATATCTTAAGTTAAAACTATT
ACCCTCAAAGAACTTATTCCTATTCTCTgaccttttcttaatatttgtCG
AGGCTTTacatttttaaatcaagttttgaAACACTGTGTGTTTCATATAA
AAACACAAATACAATCCAAACATTCTCCTTTTAAAGAAACCATAATTTTC
TATGCATACATACATAAAAACATCACCATATATCATCATAACCATTGCAA
TTGTAGTTTAAAAATCTCTTCCTCCGAgccaaacaaaaacatttataACC
AGCAATATCAGTTATTAAATATGAAATCTACTGTAACACAGAGAACCTCA
GGTTGATCCTTAAAAAGTTCCTTTCCAAAGCACTTTTTAGAAAGTCAAAA
cctctcttctcttcttttTCTCTACTTCTTCTTTTGTAATATCgtaatgt
tttatttattttctactACACTATAACACTATAAACGTAGTATAGGAATA
TATgagaataaaaatcaaaacacgtCCAACAAAATTATAAAGAGCCTCTC
TATCATCGTATTCTAGCTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012589XLOC_012589Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022442-exon-sc0000417-1491911889:221079..221648TCONS_00022442-exon-sc0000417-1491911889:221079..221648Clytia hemisphaericaexon
TCONS_00022442-exon-sc0000417-1510915933:221079..221648TCONS_00022442-exon-sc0000417-1510915933:221079..221648Clytia hemisphaericaexon
TCONS_00022442-exon-sc0000417-1575043694:221079..221648TCONS_00022442-exon-sc0000417-1575043694:221079..221648Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000417supercontigsc0000417:221079..221648 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0982763	0	0	0	0.132531	0.104728	0.12635	0.354861	0	0.410322	0.199134	0	0.0653605	0	0.0558045	0.538981	0.147551	0.226853	0.20894	0.327961	0.190038	0.139041	0.112682	0.409776	0	0.188339	0.404269	0.575262	0.327237	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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