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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022423 ID=TCONS_00022423|Name=TCONS_00022423|organism=Clytia hemisphaerica|type=transcript|length=2114bp
AGATCAGCAGCATGCTTTACCATCGAATGAAGATTGATCTGGAAGAGAGA
CATGGAATTTTCGTTATGGATGTTCGTGATTCAACGGATGGTGAAGGCAT
GCAGTGTGGTAAATTGTTCAAACAGATACATTTCGAAAAAGATTGCTGAG
AGTGGTgtaaaaaagaaatacaaagCGTACAAAAACATTCCTTTCCATTC
TCTCCCTGTTGAAGAAGATAGACGTGTAAAATGGATTGCTTTCATTAACA
GAAAGCCAGGAACTCttccaaaaaaagtttatgtttgtGGTGATCATTTT
GAACTGGGGAAGAAAAGTAATGACAAAACACATACTGATTATATACCAAC
TATTGCTGCTAAAACTAAGGAGAAAAAGTCATTCGAATCAACAACAcaat
cttcatcttcttctacATCGCCTAGAGTGTCTAAAGCTAAGCTGAAAACA
CCCAGTAGAAGTCCTTCTAAACTTCACTCAGCTTCGTCCTCATTGAAACG
AACAATGAGGCACAAAAAGATACTGATGGCTCGATTGAATAACCCAACCC
CAAGATCCAAGCCAAAACTCGAAGATACGTTACCTGTAATTGATAACGAT
GATAACGAAAATCAAGACAATGACACTGCTGCTTTgaaagagaagataaa
aaatttagaggaaattattttgaataaagatAAAGAGCTCTCCTCATCTN
AGTCATTCGAATCAACAACAcaatcttcatcttcttctacATCGCCTAGA
GTGTCTAAAGCTAAGCTGAAAACACCCAGTAGAAGTCCTTCTAAACTTCA
CTCAGCTTCGTCCTCATTGAAACGAACAATGAGGCACAAAAAGATACTGA
TGGCTCGATTGAATAACCCAACCCCAAGATCCAAGCCAAAACTCGAAGAT
ACGTTACCTGTAATTGATAACGATGATAACGAAAATCAAGACAATGACAC
TGCTGCTTTgaaagagaagataaaaaatttagaggaaataattttgaata
aagaTAAAGAACTCTCCTCATCCAAGcggaaaataaatttattaaagCAT
AGTAACCGTCACCTGAAAAATAGAGTTGAGAAGCTTATCAAGTATAACAA
TATTACTAATCTCAAACTAATTGAAACACGAAAAACTATACGAGAACAtg
tttttttagtaaacaaTGACACAGACAAGATGAAATTCTACACAGATCTt
ccatcttttgaaatttttgatgaaatcttTAACTTTGTTAAAGATCATGT
GGATCGAGATGagaattcgattaaattaaCACACAAACAAGAATTCATAA
TTGTTTTAATGAGGCTTAGACTGGGCCTTTTGGAGCAAGATCTGGCGTAC
AGATTTGGAGTTTCCCAACCTACTATTTCGAGGATAATCAACCGCTGGAT
TGGAGTGATGGCTACCAGGCTTGAATTTCTTATCCACTGGCCTGAAAGAG
AGCAACTTAGAAAAACAATGCCTGGATGTTTTTTGGataactttgaaaaa
tgtgctGTTATTTTGGactgttttgagatttttatcGAGAAGCCTACAGA
TTTAACTGCTAGGGCCCAAACCTGGTCCCAATACAAGCATCATAACACTG
TAAAGGTCTTGTTGGGTATGACCCCACAAGGGACAATTTCATTCATTTCC
CAACCGTGGGGTGGACGAGCCTCAGATGTTCATGTCACTGAAAATTCAGg
ccttttgaaaaatcttgttCCAGGAGATGTTGTGATGGCTGACCGTGGGT
TCACCATAAGTGATTCAGTTGGACTTCATTGTGCTACATTAAAAATTCCT
GAGTTTACGAAAGGAAAGTCTCAACTGGAAAAAGTTTCTCTAGACGAAAC
GCGTGATCTGGCTTCCGTTAGAATTCATGTAGAACGAATAATTGGACTGT
TACGAAATAAATATACTTTGTTACAAAAGATTGCCCCTATCAAGATGTTA
ATGTTAAAAGCCGATGGGACATGTATACTATCAGAAATTCTAATAGTTTG
TTCAGCGCTCAGTAATTTAAATGGTCCTGTGGTTCCCTNCAGCactgttt
tctttgtttttgatttcCGGAAGTGGAATGCGACATTTTGAATACCAGTG
CCCAATAAGTTCAG Run BLAST on NCBI protein sequence of TCONS_00022423-protein >TCONS_00022423-protein ID=TCONS_00022423-protein|Name=TCONS_00022423-protein|organism=Clytia hemisphaerica|type=polypeptide|length=679bp
MEFSLWMFVIQRMVKACSVVNCSNRYISKKIAESGVKKKYKAYKNIPFHS
LPVEEDRRVKWIAFINRKPGTLPKKVYVCGDHFELGKKSNDKTHTDYIPT
IAAKTKEKKSFESTTQSSSSSTSPRVSKAKLKTPSRSPSKLHSASSSLKR
TMRHKKILMARLNNPTPRSKPKLEDTLPVIDNDDNENQDNDTAALKEKIK
NLEEIILNKDKELSSSXSFESTTQSSSSSTSPRVSKAKLKTPSRSPSKLH
SASSSLKRTMRHKKILMARLNNPTPRSKPKLEDTLPVIDNDDNENQDNDT
AALKEKIKNLEEIILNKDKELSSSKRKINLLKHSNRHLKNRVEKLIKYNN
ITNLKLIETRKTIREHVFLVNNDTDKMKFYTDLPSFEIFDEIFNFVKDHV
DRDENSIKLTHKQEFIIVLMRLRLGLLEQDLAYRFGVSQPTISRIINRWI
GVMATRLEFLIHWPEREQLRKTMPGCFLDNFEKCAVILDCFEIFIEKPTD
LTARAQTWSQYKHHNTVKVLLGMTPQGTISFISQPWGGRASDVHVTENSG
LLKNLVPGDVVMADRGFTISDSVGLHCATLKIPEFTKGKSQLEKVSLDET
RDLASVRIHVERIIGLLRNKYTLLQKIAPIKMLMLKADGTCILSEILIVC
SALSNLNGPVVPXSTVFFVFDFRKWNATF Run BLAST on NCBI transcript from alignment at sc0000417:277293..280194+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022423 ID=TCONS_00022423|Name=TCONS_00022423|organism=Clytia hemisphaerica|type=transcript|length=2902bp|location=Sequence derived from alignment at sc0000417:277293..280194+ (Clytia hemisphaerica)
AGATCAGCAGCATGCTTTACCATCGAATGAAGATTGATCTGGAAGAGAGA
CATGGAATTTTCGTTATGGATGTTCGTGATTCAACGGTAAGCAATTATTA
TAAAAGTAAACAAgaaaataattaattaattaattactTAACTACATACA
TTGCGATTCTTCGTAATTTCGAAAGACCCTCGTAAAATATtatctataat
tcgaatctctctgtagaACTAGACTTCGCACTCGTGTTCGATTTAGCAAG
AGTTATAActataaaagaaacataaagCCAAAAAGtgatacttttatgga
cctacctggttatgcatttaacacatatactagatatagcttacactaac
tgccacctttcaaataatatgtttaaatattattactattatttatttat
ttacttatttttatccttttatttctagacggaagaaccctatttttatt
ttagagaagtcgattttatgataaaaaaaagttCTGTAATGGGAGATTAA
CTTTCTTAAAGAGTGTCACTTATAAGACAATATGTTTGGTTACATGAAGA
AATAAAatgtgaagattttcttttttttcgaaaaatagcaATGTAAAGAA
TCTATCTACAGGTGTATGTACCACAAAAGGCCCTCGAACCGCAGAATGTC
agtgtaaataaataaaaatgatgggttagttttaaaaatgacagtattct
tgatattcatgacgtaatctttttcgCCGATTTTCATAATCCGCCATTAT
GGGTGGCATAAATCAAAACAAGTCGCTGAAATCAAGCTAAGTTCTTGGCT
GAGCTTCTTGTGTTTCTTGATCCTGTACTGTTTCTTTGGTGCTTTTTTGA
TTCATTCCTGCTTCATTTTACAAGGATGGTGAAGGCATGCAGTGTGGTAA
ATTGTTCAAACAGATACATTTCGAAAAAGATTGCTGAGAGTGGTgtaaaa
aagaaatacaaagCGTACAAAAACATTCCTTTCCATTCTCTCCCTGTTGA
AGAAGATAGACGTGTAAAATGGATTGCTTTCATTAACAGAAAGCCAGGAA
CTCttccaaaaaaagtttatgtttgtGGTGATCATTTTGAACTGGGGAAG
AAAAGTAATGACAAAACACATACTGATTATATACCAACTATTGCTGCTAA
AACTAAGGAGAAAAAGTCATTCGAATCAACAACAcaatcttcatcttctt
ctacATCGCCTAGAGTGTCTAAAGCTAAGCTGAAAACACCCAGTAGAAGT
CCTTCTAAACTTCACTCAGCTTCGTCCTCATTGAAACGAACAATGAGGCA
CAAAAAGATACTGATGGCTCGATTGAATAACCCAACCCCAAGATCCAAGC
CAAAACTCGAAGATACGTTACCTGTAATTGATAACGATGATAACGAAAAT
CAAGACAATGACACTGCTGCTTTgaaagagaagataaaaaatttagagga
aattattttgaataaagatAAAGAGCTCTCCTCATCTNAGTCATTCGAAT
CAACAACAcaatcttcatcttcttctacATCGCCTAGAGTGTCTAAAGCT
AAGCTGAAAACACCCAGTAGAAGTCCTTCTAAACTTCACTCAGCTTCGTC
CTCATTGAAACGAACAATGAGGCACAAAAAGATACTGATGGCTCGATTGA
ATAACCCAACCCCAAGATCCAAGCCAAAACTCGAAGATACGTTACCTGTA
ATTGATAACGATGATAACGAAAATCAAGACAATGACACTGCTGCTTTgaa
agagaagataaaaaatttagaggaaataattttgaataaagaTAAAGAAC
TCTCCTCATCCAAGcggaaaataaatttattaaagCATAGTAACCGTCAC
CTGAAAAATAGAGTTGAGAAGCTTATCAAGTATAACAATATTACTAATCT
CAAACTAATTGAAACACGAAAAACTATACGAGAACAtgtttttttagtaa
acaaTGACACAGACAAGATGAAATTCTACACAGATCTtccatcttttgaa
atttttgatgaaatcttTAACTTTGTTAAAGATCATGTGGATCGAGATGa
gaattcgattaaattaaCACACAAACAAGAATTCATAATTGTTTTAATGA
GGCTTAGACTGGGCCTTTTGGAGCAAGATCTGGCGTACAGATTTGGAGTT
TCCCAACCTACTATTTCGAGGATAATCAACCGCTGGATTGGAGTGATGGC
TACCAGGCTTGAATTTCTTATCCACTGGCCTGAAAGAGAGCAACTTAGAA
AAACAATGCCTGGATGTTTTTTGGataactttgaaaaatgtgctGTTATT
TTGGactgttttgagatttttatcGAGAAGCCTACAGATTTAACTGCTAG
GGCCCAAACCTGGTCCCAATACAAGCATCATAACACTGTAAAGGTCTTGT
TGGGTATGACCCCACAAGGGACAATTTCATTCATTTCCCAACCGTGGGGT
GGACGAGCCTCAGATGTTCATGTCACTGAAAATTCAGgccttttgaaaaa
tcttgttCCAGGAGATGTTGTGATGGCTGACCGTGGGTTCACCATAAGTG
ATTCAGTTGGACTTCATTGTGCTACATTAAAAATTCCTGAGTTTACGAAA
GGAAAGTCTCAACTGGAAAAAGTTTCTCTAGACGAAACGCGTGATCTGGC
TTCCGTTAGAATTCATGTAGAACGAATAATTGGACTGTTACGAAATAAAT
ATACTTTGTTACAAAAGATTGCCCCTATCAAGATGTTAATGTTAAAAGCC
GATGGGACATGTATACTATCAGAAATTCTAATAGTTTGTTCAGCGCTCAG
TAATTTAAATGGTCCTGTGGTTCCCTNCAGCactgttttctttgtttttg
atttcCGGAAGTGGAATGCGACATTTTGAATACCAGTGCCCAATAAGTTC
AG Coding sequence (CDS) from alignment at sc0000417:277293..280194+ >TCONS_00022423 ID=TCONS_00022423|Name=TCONS_00022423|organism=Clytia hemisphaerica|type=CDS|length=4080bp|location=Sequence derived from alignment at sc0000417:277293..280194+ (Clytia hemisphaerica)
ATGGAATTTTCGTTATGGATGTTCGTGATTCAACGGATGGTGAAGGCATG
CAGTGTGGTAAATTGTTCAAACAGATACATTTCGAAAAAGATTGCTGAGA
GTGGTgtaaaaaagaaatacaaagCGTACAAAAACATTCCTTTCCATTCT
CTCCCTGTTGAAGAAGATAGACGTGTAAAATGGATTGCTTTCATTAACAG
AAAGCCAGGAACTCttccaaaaaaagtttatgtttgtGGTGATCATTTTG
AACTGGGGAAGAAAAGTAATGACAAAACACATACTGATTATATACCAACT
ATTGCTGCTAAAACTAAGGAGAAAAAGTCATTCGAATCAACAACAcaatc
ttcatcttcttctacATCGCCTAGAGTGTCTAAAGCTAAGCTGAAAACAC
CCAGTAGAAGTCCTTCTAAACTTCACTCAGCTTCGTCCTCATTGAAACGA
ACAATGAGGCACAAAAAGATACTGATGGCTCGATTGAATAACCCAACCCC
AAGATCCAAGCCAAAACTCGAAGATACGTTACCTGTAATTGATAACGATG
ATAACGAAAATCAAGACAATGACACTGCTGCTTTgaaagagaagataaaa
aatttagaggaaattattttgaataaagatAAAGAGCTCTCCTCATCTNA
GTCATTCGAATCAACAACAcaatcttcatcttcttctacATCGCCTAGAG
TGTCTAAAGCTAAGCTGAAAACACCCAGTAGAAGTCCTTCTAAACTTCAC
TCAGCTTCGTCCTCATTGAAACGAACAATGAGGCACAAAAAGATACTGAT
GGCTCGATTGAATAACCCAACCCCAAGATCCAAGCCAAAACTCGAAGATA
CGTTACCTGTAATTGATAACGATGATAACGAAAATCAAGACAATGACACT
GCTGCTTTgaaagagaagataaaaaatttagaggaaataattttgaataa
agaTAAAGAACTCTCCTCATCCAAGcggaaaataaatttattaaagCATA
GTAACCGTCACCTGAAAAATAGAGTTGAGAAGCTTATCAAGTATAACAAT
ATTACTAATCTCAAACTAATTGAAACACGAAAAACTATACGAGAACAtgt
ttttttagtaaacaaTGACACAGACAAGATGAAATTCTACACAGATCTtc
catcttttgaaatttttgatgaaatcttTAACTTTGTTAAAGATCATGTG
GATCGAGATGagaattcgattaaattaaCACACAAACAAGAATTCATAAT
TGTTTTAATGAGGCTTAGACTGGGCCTTTTGGAGCAAGATCTGGCGTACA
GATTTGGAGTTTCCCAACCTACTATTTCGAGGATAATCAACCGCTGGATT
GGAGTGATGGCTACCAGGCTTGAATTTCTTATCCACTGGCCTGAAAGAGA
GCAACTTAGAAAAACAATGCCTGGATGTTTTTTGGataactttgaaaaat
gtgctGTTATTTTGGactgttttgagatttttatcGAGAAGCCTACAGAT
TTAACTGCTAGGGCCCAAACCTGGTCCCAATACAAGCATCATAACACTGT
AAAGGTCTTGTTGGGTATGACCCCACAAGGGACAATTTCATTCATTTCCC
AACCGTGGGGTGGACGAGCCTCAGATGTTCATGTCACTGAAAATTCAGgc
cttttgaaaaatcttgttCCAGGAGATGTTGTGATGGCTGACCGTGGGTT
CACCATAAGTGATTCAGTTGGACTTCATTGTGCTACATTAAAAATTCCTG
AGTTTACGAAAGGAAAGTCTCAACTGGAAAAAGTTTCTCTAGACGAAACG
CGTGATCTGGCTTCCGTTAGAATTCATGTAGAACGAATAATTGGACTGTT
ACGAAATAAATATACTTTGTTACAAAAGATTGCCCCTATCAAGATGTTAA
TGTTAAAAGCCGATGGGACATGTATACTATCAGAAATTCTAATAGTTTGT
TCAGCGCTCAGTAATTTAAATGGTCCTGTGGTTCCCTNCAGCactgtttt
ctttgtttttgatttcCGGAAGTGGAATGCGACATTTTGAATGGAATTTT
CGTTATGGATGTTCGTGATTCAACGGATGGTGAAGGCATGCAGTGTGGTA
AATTGTTCAAACAGATACATTTCGAAAAAGATTGCTGAGAGTGGTgtaaa
aaagaaatacaaagCGTACAAAAACATTCCTTTCCATTCTCTCCCTGTTG
AAGAAGATAGACGTGTAAAATGGATTGCTTTCATTAACAGAAAGCCAGGA
ACTCttccaaaaaaagtttatgtttgtGGTGATCATTTTGAACTGGGGAA
GAAAAGTAATGACAAAACACATACTGATTATATACCAACTATTGCTGCTA
AAACTAAGGAGAAAAAGTCATTCGAATCAACAACAcaatcttcatcttct
tctacATCGCCTAGAGTGTCTAAAGCTAAGCTGAAAACACCCAGTAGAAG
TCCTTCTAAACTTCACTCAGCTTCGTCCTCATTGAAACGAACAATGAGGC
ACAAAAAGATACTGATGGCTCGATTGAATAACCCAACCCCAAGATCCAAG
CCAAAACTCGAAGATACGTTACCTGTAATTGATAACGATGATAACGAAAA
TCAAGACAATGACACTGCTGCTTTgaaagagaagataaaaaatttagagg
aaattattttgaataaagatAAAGAGCTCTCCTCATCTNAGTCATTCGAA
TCAACAACAcaatcttcatcttcttctacATCGCCTAGAGTGTCTAAAGC
TAAGCTGAAAACACCCAGTAGAAGTCCTTCTAAACTTCACTCAGCTTCGT
CCTCATTGAAACGAACAATGAGGCACAAAAAGATACTGATGGCTCGATTG
AATAACCCAACCCCAAGATCCAAGCCAAAACTCGAAGATACGTTACCTGT
AATTGATAACGATGATAACGAAAATCAAGACAATGACACTGCTGCTTTga
aagagaagataaaaaatttagaggaaataattttgaataaagaTAAAGAA
CTCTCCTCATCCAAGcggaaaataaatttattaaagCATAGTAACCGTCA
CCTGAAAAATAGAGTTGAGAAGCTTATCAAGTATAACAATATTACTAATC
TCAAACTAATTGAAACACGAAAAACTATACGAGAACAtgtttttttagta
aacaaTGACACAGACAAGATGAAATTCTACACAGATCTtccatcttttga
aatttttgatgaaatcttTAACTTTGTTAAAGATCATGTGGATCGAGATG
agaattcgattaaattaaCACACAAACAAGAATTCATAATTGTTTTAATG
AGGCTTAGACTGGGCCTTTTGGAGCAAGATCTGGCGTACAGATTTGGAGT
TTCCCAACCTACTATTTCGAGGATAATCAACCGCTGGATTGGAGTGATGG
CTACCAGGCTTGAATTTCTTATCCACTGGCCTGAAAGAGAGCAACTTAGA
AAAACAATGCCTGGATGTTTTTTGGataactttgaaaaatgtgctGTTAT
TTTGGactgttttgagatttttatcGAGAAGCCTACAGATTTAACTGCTA
GGGCCCAAACCTGGTCCCAATACAAGCATCATAACACTGTAAAGGTCTTG
TTGGGTATGACCCCACAAGGGACAATTTCATTCATTTCCCAACCGTGGGG
TGGACGAGCCTCAGATGTTCATGTCACTGAAAATTCAGgccttttgaaaa
atcttgttCCAGGAGATGTTGTGATGGCTGACCGTGGGTTCACCATAAGT
GATTCAGTTGGACTTCATTGTGCTACATTAAAAATTCCTGAGTTTACGAA
AGGAAAGTCTCAACTGGAAAAAGTTTCTCTAGACGAAACGCGTGATCTGG
CTTCCGTTAGAATTCATGTAGAACGAATAATTGGACTGTTACGAAATAAA
TATACTTTGTTACAAAAGATTGCCCCTATCAAGATGTTAATGTTAAAAGC
CGATGGGACATGTATACTATCAGAAATTCTAATAGTTTGTTCAGCGCTCA
GTAATTTAAATGGTCCTGTGGTTCCCTNCAGCactgttttctttgttttt
gatttcCGGAAGTGGAATGCGACATTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022423-exon-sc0000417-1491911889:277293..277378 | TCONS_00022423-exon-sc0000417-1491911889:277293..277378 | Clytia hemisphaerica | exon |
| TCONS_00022423-exon-sc0000417-1510915933:277293..277378 | TCONS_00022423-exon-sc0000417-1510915933:277293..277378 | Clytia hemisphaerica | exon |
| TCONS_00022423-exon-sc0000417-1575043694:277293..277378 | TCONS_00022423-exon-sc0000417-1575043694:277293..277378 | Clytia hemisphaerica | exon |
| TCONS_00022423-exon-sc0000417-1491911889:278167..280194 | TCONS_00022423-exon-sc0000417-1491911889:278167..280194 | Clytia hemisphaerica | exon |
| TCONS_00022423-exon-sc0000417-1510915933:278167..280194 | TCONS_00022423-exon-sc0000417-1510915933:278167..280194 | Clytia hemisphaerica | exon |
| TCONS_00022423-exon-sc0000417-1575043694:278167..280194 | TCONS_00022423-exon-sc0000417-1575043694:278167..280194 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000417 | supercontig | sc0000417:277293..280194 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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