TCONS_00022408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022408
Unique NameTCONS_00022408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022408 ID=TCONS_00022408|Name=TCONS_00022408|organism=Clytia hemisphaerica|type=transcript|length=449bp
TGATAAGGTTCTGGTCGGGCAAAGATGATCAGGTGTCCATTGTCAAAATA
GTGCCAGAAAAATCTTCTCTTTTATTATTAAAAGGatctatgaaaaaata
tttcacatgTGTGTTTAAAAGATAAATATTAATTTACAAACAAAAATTGC
CTAACCTATTTTCTGCTTGAATCTTAATTCTGTTTCTCTTACTGTAATTA
CAGTAGAATTGTGTGATGGTATTATagttatttgaaaatatttccagcCT
ATATTAATCTATTGTCAAATCGTCAACAGGCAGTGAAATGTAGTCACATA
AAACATATTTGATTGAAACCAAAAGTTTAGTCATTTCAGGTTCATTTAGC
CGATGTCACAAATactaaaatgtaaatttttcacattttgtacgGAGTCC
TTTCTTGAAACACTTCCTTAAATACTTGATAATTAATAAAAGATTGTGA
Run BLAST on NCBI

transcript from alignment at sc0000414:62743..63191

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022408 ID=TCONS_00022408|Name=TCONS_00022408|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0000414:62743..63191 (Clytia hemisphaerica)
TCACAATCTTTTATTAATTATCAAGTATTTAAGGAAGTGTTTCAAGAAAG
GACTCcgtacaaaatgtgaaaaatttacattttagtATTTGTGACATCGG
CTAAATGAACCTGAAATGACTAAACTTTTGGTTTCAATCAAATATGTTTT
ATGTGACTACATTTCACTGCCTGTTGACGATTTGACAATAGATTAATATA
GgctggaaatattttcaaataactATAATACCATCACACAATTCTACTGT
AATTACAGTAAGAGAAACAGAATTAAGATTCAAGCAGAAAATAGGTTAGG
CAATTTTTGTTTGTAAATTAATATTTATCTTTTAAACACAcatgtgaaat
attttttcatagatCCTTTTAATAATAAAAGAGAAGATTTTTCTGGCACT
ATTTTGACAATGGACACCTGATCATCTTTGCCCGACCAGAACCTTATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012565XLOC_012565Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022408-exon-sc0000414-1491911889:62743..63191TCONS_00022408-exon-sc0000414-1491911889:62743..63191Clytia hemisphaericaexon
TCONS_00022408-exon-sc0000414-1510915933:62743..63191TCONS_00022408-exon-sc0000414-1510915933:62743..63191Clytia hemisphaericaexon
TCONS_00022408-exon-sc0000414-1575043694:62743..63191TCONS_00022408-exon-sc0000414-1575043694:62743..63191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000414supercontigsc0000414:62743..63191 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.288303	0	0	0.199349	0.157528	0.570153	0.177923	0.249137	0	1.04836	0.787599	0.884817	1.73568	1.17515	0.270239	0.443883	0.796191	0.942841	0.657743	1.1434	1.46399	0.677968	0.616371	0	0.708233	0.202696	0.648968	0.164073	0.167164
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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