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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022397 ID=TCONS_00022397|Name=TCONS_00022397|organism=Clytia hemisphaerica|type=transcript|length=2395bpRun BLAST on NCBI protein sequence of TCONS_00022397-protein >TCONS_00022397-protein ID=TCONS_00022397-protein|Name=TCONS_00022397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=609bp MKILLFLFALYVQSIYCDNDEKPSYQKPSVGDTAYLSEAFHNQEEFKSRWRun BLAST on NCBI transcript from alignment at sc0000414:69491..99899- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022397 ID=TCONS_00022397|Name=TCONS_00022397|organism=Clytia hemisphaerica|type=transcript|length=30409bp|location=Sequence derived from alignment at sc0000414:69491..99899- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000414:69491..99899- >TCONS_00022397 ID=TCONS_00022397|Name=TCONS_00022397|organism=Clytia hemisphaerica|type=CDS|length=29280bp|location=Sequence derived from alignment at sc0000414:69491..99899- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022397 vs. Swiss-Prot (Human)
Match: CALX (Calnexin OS=Homo sapiens GN=CANX PE=1 SV=2) HSP 1 Score: 521.546 bits (1342), Expect = 2.463e-175 Identity = 267/472 (56.57%), Postives = 332/472 (70.34%), Query Frame = 1
Query: 232 KPSYQKPSVGDTAYLSEAFHNQEEFKSRWIMSEAKKDGVEDSIAKYDGVWKIAEPKENPLKGDHGLVLSSQAKHAAVSASLDKPFKFEDKALIVQYEVRFQNKHECGGAYIKLVADSPSLNLAEFTDKTEYSIMFGPDRCGNDNKLHFIFQHENPITHKMEEKHAKKPSKDFGNIFEDGKTHLVTLVVEPDNTYKILLDRKELSSGSLLADMEPPVNPPKMIDDPEDSKPENWDEREKIKDPVAVKPDDWDEDAPMMIEDPNAQKPSGWLDDESELVPDPNAVRPAXXXXXXXXXXXAPQIDNPKCK-AVGCGEWKRPSIKNANYKGKWSAPLIANPDYKGIWAPRKIENPNFFEDTNPFAMKSISAVGFELWSMQSDILFDNLIIADDQSIVDQWTVQSWEMKRKQEKSSDSSMTGMWENFMEATEEKPWLWIVAIACIFVPIVLLVYFCTXXXXXXXXXXXXXTDEPTPD 1644
K +Y+ P Y +++F S WI+S+AKKD +D IAKYDG W++ E KE+ L GD GLVL S+AKH A+SA L+KPF F+ K LIVQYEV FQN ECGGAY+KL++ +P LNL +F DKT Y+IMFGPD+CG D KLHFIF+H+NP T EEKHAK+P D F D KTHL TL++ PDN+++IL+D+ ++SG+LL DM PPVNP + I+DPED KPE+WDER KI DP AVKPDDWDEDAP I D A KP GWLDDE E VPDP+A +P DWD++ DGEWEAPQI NP+C+ A GCG W+RP I N NYKGKW P+I NP Y+GIW PRKI NP+FFED PF M SA+G ELWSM SDI FDN II D+ IVD W W +K+ + +++ + G +EA EE+PWLW+V I + +P+ L++ FC S K KKTD P PD
Sbjct: 57 KVTYKAPVPTGEVYFADSFDRGT--LSGWILSKAKKDDTDDEIAKYDGKWEVEEMKESKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQYEVNFQNGIECGGAYVKLLSKTPELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGIYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSVVNSGNLLNDMTPPVNPSREIEDPEDRKPEDWDERPKIPDPEAVKPDDWDEDAPAKIPDEEATKPEGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPRCESAPGCGVWQRPVIDNPNYKGKWKPPMIDNPSYQGIWKPRKIPNPDFFEDLEPFRMTPFSAIGLELWSMTSDIFFDNFIICADRRIVDDWANDGWGLKKAADGAAEPGVVG---QMIEAAEERPWLWVVYILTVALPVFLVILFCCSGKKQTSGMEYKKTDAPQPD 523 The following BLAST results are available for this feature:
BLAST of TCONS_00022397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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