TCONS_00022361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022361
Unique NameTCONS_00022361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022361 ID=TCONS_00022361|Name=TCONS_00022361|organism=Clytia hemisphaerica|type=transcript|length=1453bp
cttgggagaaagattttgcgtacttgggagaaagattttgcatacttggg
aggaagattttgcatacttgggaggaagtttttgcatacttgggaggaag
attttgcatacttgggaggaagattttgcacacttgggagcaagattttg
cacacttgggagcaagattttgcatacttgggagcaagatttttcaTACT
CTTGATtgaattaatttaatttttttttaatatgtttAGGCGAAGACACG
GTCAGTGATTCCGAAGCGCGACAACAATCAACTTTCTGATGAACAAGCAG
CAGACCAGGAATGGAAGGATAACATCATTAACAATGACTCACTTGTCTTC
AATCTCTTCCAGGGACAATTTCGATCTACAGTGACCTGTTTGACGTGTCG
TTATCAATCCAAAACATTCAACACTTTCAATTGTTTACATCTTCAACTAC
CGGTTACTAGAGTCGCAACTCTTGCTCAATGTTTGGAGCTGTTCGTCAAG
CCAGAAAAAATAGATTCATGGCATTGTGAACGATGTAAATGTGATCGATC
AGCTGCCAAGACAATTGAATTATGGAAACTCCCTCTTGTACTCATCGTGC
AGCTCAAAAGATTTCGATGTGAGGGTATTTGGACGAATAAAGTTCAAACA
GCGGTTGATTATCCCGTCAACAATTGGAATCTCTCACAGTATGTCACCGG
ACCATCAAAACGAGCATCCAACTACAATTTATACGGTATAATCAATCATT
CGGGTAGCTTTGAATCCGGACATTACACAGCACGTTGCAAGAATGCAAAC
ACCGGTGGAGGATGGTTCCTCTATAACGATGAACGAATTTCTGAGCTAAA
TACCATTAAGACAAAAGAAGCGTATGTATTGCTCTACACAGCCGTCAACT
TCGAAGATTACGTCACCAAGAGATGATTGATAGAATATAGAGTCCTGGCT
CCAAATCGTTGGCAATGTAATGAAAAGGAGAATGTTGTTCATACTTTTTT
CACAATGGTCGAAATCTTTACCGCGAAGTTTCGTACGTCCAATCTTATTG
GTAAAACACTCGATTGGTGTAAAACCTGTTTTATTTTGAGTTACTCTAAA
CATGAAAATGACCTGATGTGGTGATGATTCATTGCGATTATTTATGTATA
GTTTTGTAGACTAATTAAATGTATATCTCTTATCACTAGCATTTATAGCA
TTCTTTAAAATGCCGAAGTAATCTAAACATTTTGAATAAATCGGAACAGT
TGACTTGCCTACTTTCCtttatcttttgtttttcttcttcaatcaGCAAA
GTGGTCAAGGATAgattttttcactttaattAATGTTCACTTATTTTGTA
ATTAAGCACATACTTTTTGttcagttttttatttttttatcgtaATAGAA
TTGTACCATAGGAAATGTGGATTCTTTAATGTAAGTTGGTGTTTTCCTCC
tcc
Run BLAST on NCBI

transcript from alignment at sc0000414:10979..13910+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022361 ID=TCONS_00022361|Name=TCONS_00022361|organism=Clytia hemisphaerica|type=transcript|length=2932bp|location=Sequence derived from alignment at sc0000414:10979..13910+ (Clytia hemisphaerica)
cttgggagaaagattttgcgtacttgggagaaagattttgcatacttggg
aggaagattttgcatacttgggaggaagtttttgcatacttgggaggaag
attttgcatacttgggaggaagattttgcacacttgggagcaagattttg
cacacttgggagcaagattttgcatacttgggagcaagatttttcaTACT
CTTGATtgaattaatttaatttttttttaatatgtttAGGCGAAGACACG
GTCAGTGATTCCGAAGCGCGACAACAATCAACTTTCTGATGAACAAGCAG
CAGACCAGGAATGGAAGGATAACATCATTAACAATGACTCACTTGTCTTC
AATCTCTTCCAGGTACCACGCAATCTCTTTTTTCATAAAGTTTCTCTAAT
TTTGATTatagagaaaaaaatgtttcttttttaacGTTTAACACCAAACT
TTTTACTAAACTTTTagtaaaaatccgaaaaatttCTAGTATCGTATGtt
ttagttattttttgttCTTCTATAACTATCATAACTGTTTCAATCTTTTA
GGGACAATTTCGATCTACAGTGACCTGTTTGACGTGTCGTTATCAATCCA
AAACATTCAACACTTTCAATTGTTTACATCTTCAACTACCGGTTACTAGA
GTCGCAACTCTTGCTGTAAGTTACACGTGGGCTTTCTTGACTTCGTAATA
TTTCGTAAAATTTAGCAGCTGAAGATTTTATAATTCAAGATTTTCCCCTC
TGCCCTCAATATCTTTGTTTAAAAGTATATGTTATAGCTAGACTCGCTAG
ACTATTCAAAATACTTACTTGTCTTGTTTTAGCAATGTTTGGAGCTGTTC
GTCAAGCCAGAAAAAATAGATTCATGGTAAGTTTTTACAACTCTTTGTTT
AAAAAACTCCTTTTAACCCTTCAAACCCGAGTGACGTGTATACACATTCT
AATTTTGTCGAAatactagactggagtcgtttataatgcgtgtaatacta
ataataccaatactaataataatacgggatttagtttgtataaacgactg
gaagaatccggtgTTCCAGCCTTATAGATACAGGGGCTAGCTACGCAGAA
ACTTACGTAgtgagaaaacaatttatcaagcaacaacaaactctcaaaac
gaaatcaactcaaatgaaaaactttcaatacaaatccacacatatttttt
ttctcgagaaTTAtgttgagcaggaaaaaattataattgcaatattgaca
cttttcctttgtttggagttagtgcacaaaagtttctagacgactaaaat
tgttccattcattactttttgctttatttctactatgtataaattagtcg
tctagcttgctagactatcgAAATACCGAGTCccacactttcaaaaaata
ttgtgCGCTGGAAAGGTTGAAAATTTCCTTATTACTATTATTAATGGTTT
TAATTTTCTGTTCATCTTTTTTCGTTTAGGCATTGTGAACGATGTAAATG
TGATCGATCAGCTGCCAAGACAATTGAATTATGGAAACTCCCTCTTGTAC
TCATCGTGCAGCTCAAAAGGTATCCTACATATTCATCGCATGACCTATTT
TGATTGGAACGATCCTTGGTGTTGTGTGAACAATTTCTGTTGTATGTTTG
CGTTAAACTAGAGCCTTGTAATAAATAGATTAAACGGGGAAAGGTTAACT
CTCGTTCAGGGCTATCATTTCGGTGTTATCATACAGGggtgtgaattttt
tttgtttttaaaaatatttcattgctGACTTTTTGAATGTCTACTCTGTT
TTTCTGTTGATTCCAGATTTCGATGTGAGGGTATTTGGACGAATAAAGTT
CAAACAGCGGTTGATTATCCCGTCAACAATTGGAATCTCTCACAGTATGT
CACCGGACCATCAAAACGAGCATCCAACTACAATTTATACGGTATAATCA
ATCATTCGGGTAGCTTTGAATCCGGACATTACACAGCACGTTGCAAGAAT
GCAAACACCGGTGGAGGATGGTTCCTCTATAACGATGAACGAATTTCTGA
GCTAAATACCATTAAGGTGAGAATATGCTTTGTTGCTTTATCCATGTTCA
GTAATTTTTATGATACCATTAGCCATGTTTGTTTTATCCGAAAAATCTAT
CCTGCAGATAAGTCGAGGTATTGCATGTCTTCACTTCATCTCTGTCTAGC
GACTTCGTGTACGTAAGAGAGAGGAATTCGTGGTTTGAGGAATTGGGATA
ATTATTGTTCGGATCTGctcttttttatgatttattcTGTGAAATCATGC
TCGTTtatgctttttatttttttttttgctgaattaCAGACAAAAGAAGC
GTATGTATTGCTCTACACAGCCGTCAACTTCGAAGATTACGTCACCAAGA
GATGATTGATAGAATATAGAGTCCTGGCTCCAAATCGTTGGCAATGTAAT
GAAAAGGAGAATGTTGTTCATACTTTTTTCACAATGGTCGAAATCTTTAC
CGCGAAGTTTCGTACGTCCAATCTTATTGGTAAAACACTCGATTGGTGTA
AAACCTGTTTTATTTTGAGTTACTCTAAACATGAAAATGACCTGATGTGG
TGATGATTCATTGCGATTATTTATGTATAGTTTTGTAGACTAATTAAATG
TATATCTCTTATCACTAGCATTTATAGCATTCTTTAAAATGCCGAAGTAA
TCTAAACATTTTGAATAAATCGGAACAGTTGACTTGCCTACTTTCCttta
tcttttgtttttcttcttcaatcaGCAAAGTGGTCAAGGATAgatttttt
cactttaattAATGTTCACTTATTTTGTAATTAAGCACATACTTTTTGtt
cagttttttatttttttatcgtaATAGAATTGTACCATAGGAAATGTGGA
TTCTTTAATGTAAGTTGGTGTTTTCCTCCtcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012546XLOC_012546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022361-exon-sc0000414-1491911889:10979..11340TCONS_00022361-exon-sc0000414-1491911889:10979..11340Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1510915933:10979..11340TCONS_00022361-exon-sc0000414-1510915933:10979..11340Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1575043694:10979..11340TCONS_00022361-exon-sc0000414-1575043694:10979..11340Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1491911889:11530..11643TCONS_00022361-exon-sc0000414-1491911889:11530..11643Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1510915933:11530..11643TCONS_00022361-exon-sc0000414-1510915933:11530..11643Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1575043694:11530..11643TCONS_00022361-exon-sc0000414-1575043694:11530..11643Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1491911889:11811..11854TCONS_00022361-exon-sc0000414-1491911889:11811..11854Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1510915933:11811..11854TCONS_00022361-exon-sc0000414-1510915933:11811..11854Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1575043694:11811..11854TCONS_00022361-exon-sc0000414-1575043694:11811..11854Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1491911889:12458..12547TCONS_00022361-exon-sc0000414-1491911889:12458..12547Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1510915933:12458..12547TCONS_00022361-exon-sc0000414-1510915933:12458..12547Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1575043694:12458..12547TCONS_00022361-exon-sc0000414-1575043694:12458..12547Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1491911889:12795..13044TCONS_00022361-exon-sc0000414-1491911889:12795..13044Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1510915933:12795..13044TCONS_00022361-exon-sc0000414-1510915933:12795..13044Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1575043694:12795..13044TCONS_00022361-exon-sc0000414-1575043694:12795..13044Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1491911889:13318..13910TCONS_00022361-exon-sc0000414-1491911889:13318..13910Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1510915933:13318..13910TCONS_00022361-exon-sc0000414-1510915933:13318..13910Clytia hemisphaericaexon
TCONS_00022361-exon-sc0000414-1575043694:13318..13910TCONS_00022361-exon-sc0000414-1575043694:13318..13910Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000414supercontigsc0000414:10979..13910 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.6397	37.4609	29.9335	29.9803	19.3452	15.2868	16.1329	17.7809	12.8574	14.2292	15.9493	10.1805	16.5014	14.261	9.79742	12.7386	15.7571	14.6365	11.884	20.5571	16.3513	18.0359	18.8022	17.2128	22.2299	24.13	21.899	20.8254	23.7721	22.027
Blast
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BLAST of TCONS_00022361 vs. Swiss-Prot (Human)
Match: UBP8 (Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.761e-51
Identity = 98/224 (43.75%), Postives = 137/224 (61.16%), Query Frame = 3 
Query:  240 AKTRSVIPKRDNNQLSDEQAADQEWKDNIINNDSLVFNLFQGQFRSTVTCLTCRYQSKTFNTFNCLHLQLPVTRVATLAQCLELFVKPEKI---DSWHCERCKCDRSAAKTIELWKLPLVLIVQLKRFRCEGIWTNKVQTAVDYPVNNWNLSQYVTGPSKRASNYNLYGIINHSGSFESGHYTARCKNANTGGGWFLYNDERISELNTIKTKE--AYVLLYTAV 896
            A  R    + +N+ L D +AA+  W+ +   N+S++  LFQGQF+STV CLTC  +S+TF  F  L L L  T   TL  CL LF K EK+   + ++C  C+  R + K IE+WKLP VL+V LKRF  +G W  K+QT+VD+P+ N +LSQYV GP      YNL+ + NH G  + GHYTA CKNA     WF ++D  +S+++    K   AY+L YT++
Sbjct:  887 ADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNA-ARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSL 1109
The following BLAST results are available for this feature:
BLAST of TCONS_00022361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP83.761e-5143.75Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sa... [more]
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