TCONS_00022308 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022308
Unique NameTCONS_00022308
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1604

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022308 ID=TCONS_00022308|Name=TCONS_00022308|organism=Clytia hemisphaerica|type=transcript|length=1604bp
caaagttaatttttttcaccttcatttttcatcttcattctcTATTTTTT
CGGGATTGACCCGTTactttatttcgattttttgcacaatgatgcgaaAT
GGGGAATACCTAAAATTTGACGGAGACtgattttcgataaaaaatatatt
ttggataAATTTATCTCAGCACGTAGCTTATCTTTCATTATTTGGTGATA
TTCCACtcttgaatatatttttaataaACACGGGACCCCTTTTCAAAGCT
ATCCATCAAGTTAGGACCTTCTTTGCCTtcactgcagattatattgagac
ggACCTTAGACGGTTAAACTTGGTGAATTGAATGGTAAATGGAACATCTT
TATGTAATTAAATCCCATAAAATCAGTTATCTACCTACGGTAGTTTGACA
TTATCACTCTATTTCACGGTACTCCCCTCAAAGATGTTGGAATGATTTGT
TTGGTTAATTCTGCCAACGAGCGAAGCCTTTGTCGGTTAAATACTGGAGT
GGTTACTAATATATTCAATCAAtgaattaacaaaataaaattaacgacta
aattttttcttctttttcctcttcCTGCAGACGAAGAACGAAATGCCCGA
TAAAGTAGAAGAGATCAAACATATGTTTTTGATGGAACCTTACGAAAACG
CTGCTTCCTTACCACAACACATCAAGAACTTCTGCGCTGGACGAGCTATC
GTGACAAGACAAGTAGTCACCACTTTGAAACAAGCCGCCGAAATCGCTGT
CAAACAAGCTAAAGctGCCAAGAAGAATTCCAAGAAGCGAGCTGTTCTTC
GTGAATTTACCGCTTGTACAAACGCCTCAACCATGAAAATCATGACTTGC
CCTGGTGACAAACTCCGTGCTGAGTGCAAAATCCGACGAAGCTCATGCAC
ATATTTGGTCAAATGTCCAATGGACTTACAAAAAGGAGGATTTGACTGCA
GAGGGCTTCACAAATTNTTGAAAGGGGAGGACTTGTTAGAATACAGATAA
ACATTCTTTGTGTTTCCTGAATGACATACccggtttttataagaacatcc
aaaatcttcgagcccttcggatgtttttagatttttgagttttaaaccta
aggtgttcttaaaatgttgttagtttcaccattttgtgagtttttttcca
attttctaagaaattgggatgttttagagtccataaagccttaaaatgtt
ctaaactttttcttaatatttggCCATGNGTGTgagtttttttccaattt
tctaagaaattgggatGTTTTAGAGGCCATAAAGCCTTATATTCTCTTAT
ACAAGACGTGTAGTAATAAAAAGCAATGTTCATTTATTCCACCTACTGTA
TCCTCGAAGGGCATCGCTGTCAGCAAATTCGATAAAGACGACACAAAACA
TTGCATCGTTCGTCCATACAACCCATCTGAAGATTCCAACCCCAATGAAG
TTTCAAGAGCTCTTGTAATGGTGAGTACATTCATTTAGTCTGCGAACGTC
TTTAAGAAGCTCATACTCGTGTTTTATGTGTTTAATCAATACTACGAGTG
AAAGACACATCGAGAAAGGGCCGTCGTCTGGTTTTGCGAACGGTCCTTTC
TTTA
Run BLAST on NCBI

protein sequence of TCONS_00022308-protein

>TCONS_00022308-protein ID=TCONS_00022308-protein|Name=TCONS_00022308-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MPDKVEEIKHMFLMEPYENAASLPQHIKNFCAGRAIVTRQVVTTLKQAAE
IAVKQAKAAKKNSKKRAVLREFTACTNASTMKIMTCPGDKLRAECKIRRS
SCTYLVKCPMDLQKGGFDCRGLHKXLKGEDLLEYR
Run BLAST on NCBI

transcript from alignment at sc0000411:29816..31614-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022308 ID=TCONS_00022308|Name=TCONS_00022308|organism=Clytia hemisphaerica|type=transcript|length=1799bp|location=Sequence derived from alignment at sc0000411:29816..31614- (Clytia hemisphaerica)
CAAAGTTAATTTTTTTCACCTTCATTTTTCATCTTCATTCTCTATTTTTT
CGGGATTGACCCGTTACTTTATTTCGATTTTTTGCACAATGATGCGAAAT
GGGGAATACCTAAAATTTGACGGAGACTGATTTTCGATAAAAAATATATT
TTGGATAAATTTATCTCAGCACGTAGCTTATCTTTCATTATTTGGTGATA
TTCCACTCTTGAATATATTTTTAATAAACACGGGACCCCTTTTCAAAGCT
ATCCATCAAGTTAGGACCTTCTTTGCCTTCACTGCAGATTATATTGAGAC
GGACCTTAGACGGTTAAACTTGGTGAATTGAATGGTAAATGGAACATCTT
TATGTAATTAAATCCCATAAAATCAGTTATCTACCTACGGTAGTTTGACA
TTATCACTCTATTTCACGGTACTCCCCTCAAAGATGTTGGAATGATTTGT
TTGGTTAATTCTGCCAACGAGCGAAGCCTTTGTCGGTTAAATACTGGAGT
GGTTACTAATATATTCAATCAATGAATTAACAAAATAAAATTAACGACTA
AATTTTTTCTTCTTTTTCCTCTTCCTGCAGACGAAGAACGAAATGCCCGA
TAAAGTAGAAGAGATCAAACATATGTTTTTGATGGAACCTTACGAAAACG
CTGCTTCCTTACCACAACACATCAAGAACTTCTGCGCTGGACGAGCTATC
GTGACAAGACAAGTAGTCACCACTTTGAAACAAGCCGCCGAAATCGCTGT
CAAACAAGCTAAAGGTATGAAAAACGTTTTTTCTTCTGTGGAATACCTTG
TAATGCCTAGTGGTGCAATGTCTTTTTTAATTAATTGCTCCAATATGTAG
ACATTTGCAATACTAACTCAGTACCTTTAGTTACATGAAATAGTGTAGCG
GCCACCTCCTTTCAAATGATTCACAAGTGGAAGAAAAATTCATTAATTTT
TCTTTTCAGCTGCCAAGAAGAATTCCAAGAAGCGAGCTGTTCTTCGTGAA
TTTACCGCTTGTACAAACGCCTCAACCATGAAAATCATGACTTGCCCTGG
TGACAAACTCCGTGCTGAGTGCAAAATCCGACGAAGCTCATGCACATATT
TGGTCAAATGTCCAATGGACTTACAAAAAGGAGGATTTGACTGCAGAGGG
CTTCACAAATTNTTGAAAGGGGAGGACTTGTTAGAATACAGATAAACATT
CTTTGTGTTTCCTGAATGACATACCCGGTTTTTATAAGAACATCCAAAAT
CTTCGAGCCCTTCGGATGTTTTTAGATTTTTGAGTTTTAAACCTAAGGTG
TTCTTAAAATGTTGTTAGTTTCACCATTTTGTGAGTTTTTTTCCAATTTT
CTAAGAAATTGGGATGTTTTAGAGTCCATAAAGCCTTAAAATGTTCTAAA
CTTTTTCTTAATATTTGGCCATGNGTGTGAGTTTTTTTCCAATTTTCTAA
GAAATTGGGATGTTTTAGAGGCCATAAAGCCTTATATTCTCTTATACAAG
ACGTGTAGTAATAAAAAGCAATGTTCATTTATTCCACCTACTGTATCCTC
GAAGGGCATCGCTGTCAGCAAATTCGATAAAGACGACACAAAACATTGCA
TCGTTCGTCCATACAACCCATCTGAAGATTCCAACCCCAATGAAGTTTCA
AGAGCTCTTGTAATGGTGAGTACATTCATTTAGTCTGCGAACGTCTTTAA
GAAGCTCATACTCGTGTTTTATGTGTTTAATCAATACTACGAGTGAAAGA
CACATCGAGAAAGGGCCGTCGTCTGGTTTTGCGAACGGTCCTTTCTTTA

Coding sequence (CDS) from alignment at sc0000411:29816..31614-

>TCONS_00022308 ID=TCONS_00022308|Name=TCONS_00022308|organism=Clytia hemisphaerica|type=CDS|length=816bp|location=Sequence derived from alignment at sc0000411:29816..31614- (Clytia hemisphaerica)
CTGCCAAGAAGAATTCCAAGAAGCGAGCTGTTCTTCGTGAATTTACCGCT
TGTACAAACGCCTCAACCATGAAAATCATGACTTGCCCTGGTGACAAACT
CCGTGCTGAGTGCAAAATCCGACGAAGCTCATGCACATATTTGGTCAAAT
GTCCAATGGACTTACAAAAAGGAGGATTTGACTGCAGAGGGCTTCACAAA
TTNTTGAAAGGGGAGGACTTGTTAGAATACAGATAAATGCCCGATAAAGT
AGAAGAGATCAAACATATGTTTTTGATGGAACCTTACGAAAACGCTGCTT
CCTTACCACAACACATCAAGAACTTCTGCGCTGGACGAGCTATCGTGACA
AGACAAGTAGTCACCACTTTGAAACAAGCCGCCGAAATCGCTGTCAAACA
AGCTAAAGCTGCCAAGAAGAATTCCAAGAAGCGAGCTGTTCTTCGTGAAT
TTACCGCTTGTACAAACGCCTCAACCATGAAAATCATGACTTGCCCTGGT
GACAAACTCCGTGCTGAGTGCAAAATCCGACGAAGCTCATGCACATATTT
GGTCAAATGTCCAATGGACTTACAAAAAGGAGGATTTGACTGCAGAGGGC
TTCACAAATTNTTGAAAGGGGAGGACTTGTTAGAATACAGATAAATGCCC
GATAAAGTAGAAGAGATCAAACATATGTTTTTGATGGAACCTTACGAAAA
CGCTGCTTCCTTACCACAACACATCAAGAACTTCTGCGCTGGACGAGCTA
TCGTGACAAGACAAGTAGTCACCACTTTGAAACAAGCCGCCGAAATCGCT
GTCAAACAAGCTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012514XLOC_012514Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022308-proteinTCONS_00022308-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022308-exon-sc0000411-1575043694:30851..31614TCONS_00022308-exon-sc0000411-1575043694:30851..31614Clytia hemisphaericaexon
TCONS_00022308-exon-sc0000411-1575043694:29816..30655TCONS_00022308-exon-sc0000411-1575043694:29816..30655Clytia hemisphaericaexon
TCONS_00022308-exon-sc0000411-1510915933:30851..31614TCONS_00022308-exon-sc0000411-1510915933:30851..31614Clytia hemisphaericaexon
TCONS_00022308-exon-sc0000411-1510915933:29816..30655TCONS_00022308-exon-sc0000411-1510915933:29816..30655Clytia hemisphaericaexon
TCONS_00022308-exon-sc0000411-1491911889:30851..31614TCONS_00022308-exon-sc0000411-1491911889:30851..31614Clytia hemisphaericaexon
TCONS_00022308-exon-sc0000411-1491911889:29816..30655TCONS_00022308-exon-sc0000411-1491911889:29816..30655Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000411supercontigsc0000411:29816..31614 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0508641	0.0496006	0.0287955	0.0845157	0.308669	0.135508	0.653939	0.704041	0.0857245	0.238913	0.154597	0.237127	492.772	469.824	0.332147	0.790377	229.32	269.091	2606.02	2539.71	863.16	883.71	198.152	278.349	582.161	538.675	0	0	0.0282276	0.115038
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022308 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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