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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022279 ID=TCONS_00022279|Name=TCONS_00022279|organism=Clytia hemisphaerica|type=transcript|length=2527bpRun BLAST on NCBI protein sequence of TCONS_00022279-protein >TCONS_00022279-protein ID=TCONS_00022279-protein|Name=TCONS_00022279-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp RNDIYLTKKAQKSRSSAYKEWTDQETLLLLEGLELHKDDWNKVSEHVGTRRun BLAST on NCBI transcript from alignment at sc0000410:232094..237401- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00022279 ID=TCONS_00022279|Name=TCONS_00022279|organism=Clytia hemisphaerica|type=transcript|length=5308bp|location=Sequence derived from alignment at sc0000410:232094..237401- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000410:232094..237401- >TCONS_00022279 ID=TCONS_00022279|Name=TCONS_00022279|organism=Clytia hemisphaerica|type=CDS|length=18120bp|location=Sequence derived from alignment at sc0000410:232094..237401- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00022279 vs. Swiss-Prot (Human)
Match: SMRC1 (SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1 SV=3) HSP 1 Score: 174.096 bits (440), Expect = 1.652e-44 Identity = 102/142 (71.83%), Postives = 125/142 (88.03%), Query Frame = 3
Query: 3 RNDIYLTKKAQKSR-SSAYKEWTDQXXXXXXXXXXXHKDDWNKVSEHVGTRTQDECIMQFLKLPIEDPYLEKDSTGFLGPLAFQPTPFSQSGNPIMSTVSFLASIVDPRVXXXXXXXXVDEFSRLKEEIPEELIDAHVEKAK 425
R DIY K KS+ +SA +EWT+QETLLLLE LE++KDDWNKVSEHVG+RTQDECI+ FL+LPIEDPYLE +S LGPLA+QP PFSQSGNP+MSTV+FLAS+VDPRVASAAAKAA++EFSR++EE+P EL++AHV+K +
Sbjct: 602 RTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLE-NSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQ 742 HSP 2 Score: 108.227 bits (269), Expect = 6.447e-24 Identity = 55/68 (80.88%), Postives = 59/68 (86.76%), Query Frame = 3
Query: 780 VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDKEREILEQQRQSLIKERQEFFADQLKAQEARA 983
VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMD+E+E LEQQRQ L+ ERQ F +QLK E RA
Sbjct: 887 VEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRA 954 The following BLAST results are available for this feature:
BLAST of TCONS_00022279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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