|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022277 ID=TCONS_00022277|Name=TCONS_00022277|organism=Clytia hemisphaerica|type=transcript|length=2680bp
ACTTAGGTagtttaagtaaaaaaaaacaaaaaggctACTATGTTATGAAA
TCAGACATAATATTCCTGTACCATCTAGTTGAATCCGACAATCAAAAAAT
AAAGGAGAAGTGTATTTTGTTGGGAAATATTGTCGAGTGTTTTTGAAGTG
AAGTTTAAAGCCACATGATTTGATATTTCAACAGTATAACAATGATCTTA
AAGTTGCTATTGTCGTTTAATTTTGTCCTCAATATTTTACTAATAACTGT
AATGGCTGAGGAAATTCGAGGACAGCTTGTAGGGGGGCTAAAGGAGCAAG
AAATAAAGATTCTTGACAGCGTTGTTGGGAACGGAAAGACACTTTGGGAT
TACCTTCAAAATAAGATTGAAGAGTATGCTAAACAAAGAAACAGTTTATA
CATGTATGGTATCAATGATATTCATGTCCAGTCACAAGTTGTCCAAGGGG
TTTTATACAAAGTAACCTTGGATTTAGCACCAACTGATTGCCACAACAAC
AAGTTTTTGTCAGAGGAAAGCAACAATGCACGACTGGAAATGATCCGTAC
ATGCTCTATCAACAAATCACATGGATCACATGAAAAACATGTCATCGACT
TATGGGTTAGATCTTGGttgcctgaaaatgaaaaagtgatAGTGTCAGAA
GCTGCTCACTAAACTTGCCAATACTCTCCATTTAATTttatgtttgaaaa
aagttgaattttatcATAGGATCAAAAATAGTCGGAGCAAACACACGAAA
ACTTTTGCTTTGGGTACTTTCCTGGCTGGATggtctttttttgtttcatt
tttcattcttcttACTCAAAAAAGGAGAACCTACAATAACTGTTGTTTGA
TTACCATGTAAGTAATTGTAAGTGTCCTTGATAAGTTGCATTTCTAATTT
AAgataaaactattttttctGATCTGGGAAACCTTTAAATAATTCAGTCT
CTATGGATGAGGTTGTGAATGTCATCATATAAATACAGAGCAATTATTTG
AATACATTGAAGGTTCTCCTTTATTTCTTTAAGTGGGTATGTCAGTAAAA
TGATTAAACCTGGTAACAGTCTCTGACTTAATCAGAATTTTACTCCTTTG
TCTGATTTCGtttgtataaaaattttcgggtaAGGACATGTTCATTAAAA
CGCACTACTTTTAACATTGCAAATTGTTTAGTGGTCCCTGCATATTACAG
AAAACAtattaaagcaaaaaaagtaacaTCGTAAATTCAAGAAAATGAGT
CTTTTTGAGGGTGTGTACTCAGTTATCCATTTTCTTGCGCAGCTTTCCTT
CCCCTTAAAAATTGGCTAGAAGACCCAGTTTTCATTATTGCATAGGTACT
ACTCTTTATTCCcagacgttttttttttattgtcacAAAATAAAGATATG
CAATGTTGAGTGACAGCACCTAGTTTAGTAGTGCGTTTTAATGAATATGT
TTTCTGTGAGAAAGGTTTtaagttgttttattttatttttaattcaatta
attATTGAACGATTTTTATAAGATTACTTTCTGATTGAacattctttgtt
gttttttccatAGCACTCGATATTTAAAATCACGtcagaattttttctaa
atatcTTGTATTAATGAAATCAAGATAATTTGAAAGATGAATAGCACTTT
GAGGTTGAAATATTTCTATTCAACCTCGTTCCCATGActactttcttttt
ttgattaatGCGGAGATTAGCCCTGGACCTAGCTAGATTTTGATCGCCTG
TATGAGGCGATTTTCAGAAAATATTGATTGAAAAGCATTACATACTATAC
TATCAATGCATCAGAGTGAATTTGAGTTTTTCTTAGAGAAAAGTGGTTTT
TAGTAACAATTGGCCCAAATTGAggagttttcttttttagacAAAAATTC
TAACGGTTCTTTTAAATTATcatgaaatgtttttaaaggCATTTAATTGA
ATAAGCATTTTGAGCGTTTAAGTTTGTTCTGTaaaaaaggtcaatttttt
atcaaacagtaCCGTCATTTCTTACAAATaatctcattttttttaaatca
gtcaATTTTTGGGTAGTTTTTACTTTGATTATTATGTTGAATTATTCTTA
AAAAAGCTTGTATATgtattagcccccccccccccaccccccctCANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgcaatcacgcaatt
ttttttcgaaattcacgcattcacgcaaattttcctcgagtttcacgcaa
taacccgatttttcaggaaatcggaaaattttcagaaaaaattgggcaaa
gattggaaaatcgggaaaactgcacaaaatcggtggaaaaaaggggaaat
tcacgtattcacgcataaaatagcccagattcacggattcatgcaatcaa
aaagtgaattttcacgttcacgcaagtgtttttaattcacgcattcacgc
atttttttccaattttcacgcattcacgcaaaccactggggggggggggc
catgTATGTTACTCAAATTTTAGTTGGAAATATAACAAAAACGATGGTAG
AGATGGAAGATTCGAATAACTTATAACATTTTACTATAATANaacccggg
gggggggggggccatgTATGTTACTCAAATTTTAGTTGGAAATATAACAA
AAACGATGGTAGAGATGGAAGATTCGAATA Run BLAST on NCBI protein sequence of TCONS_00022277-protein >TCONS_00022277-protein ID=TCONS_00022277-protein|Name=TCONS_00022277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MILKLLLSFNFVLNILLITVMAEEIRGQLVGGLKEQEIKILDSVVGNGKT
LWDYLQNKIEEYAKQRNSLYMYGINDIHVQSQVVQGVLYKVTLDLAPTDC
HNNKFLSEESNNARLEMIRTCSINKSHGSHEKHVIDLWVRSWLPENEKVI
VSEAAH Run BLAST on NCBI transcript from alignment at sc0000410:154938..158735- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022277 ID=TCONS_00022277|Name=TCONS_00022277|organism=Clytia hemisphaerica|type=transcript|length=3798bp|location=Sequence derived from alignment at sc0000410:154938..158735- (Clytia hemisphaerica)
ACTTAGGTAGTTTAAGTAAAAAAAAACAAAAAGGCTACTATGTTATGAAA
TCAGACATAATATTCCTGTACCATCTAGTTGAATCCGACAATCAAAAAAT
AAAGGAGAAGTGTATTTTGTTGGGAAATATTGTCGAGTGTTTTTGAAGTG
AAGTTTAAAGCCACATGATTTGATATTTCAACAGTATAACAATGATCTTA
AAGTTGCTATTGTCGTTTAATTTTGTCCTCAATATTTTACTAATAACTGT
AATGGCTGAGGAAATTCGAGGACAGCTTGTAGGGGGGCTAAAGGAGCAAG
AAATAAAGATTCTTGACAGCGTTGTTGGGAACGGAAAGACACTTTGGGAT
TACCTTCAAAATAAGATTGAAGAGTATGCTAAACAAAGAAACAGTTTATA
CATGTATGGTATCAATGATATTCATGTCCAGTCACAAGTTGTCCAAGGGG
TTTTATACAAAGTAACCTTGGATTTAGCACCAACTGATTGCCACAACAAC
AAGTTTTTGGTGAGTGTTTTTAGGATGTCAATTTACGAATTTAGTGACAT
TTCTTCTTCTAATCGACTACTACTGTAATGGGTGCATCTTACTTTCTAGT
CCGACAACAAAACAGTCTGACAGTCCGAATCCAGACAAAATACAACATGG
CACGGTGATCTGGTGTTGGAAGTATGAAAAATCGGGGAAACTTTTTTTTA
ATAACTCGAGTTTTAATAGTCGAATGAAGATGGAAATTTGTGTATATAGT
GCAATTGATGTACGAAATAGACTAAAATATAAAATTTCCGAAAACTATAA
TAAGGTTTCTTGAAACAGAGCACTTTTGTTTTTTCAGATCCCTCAAAATC
CCTAGAAATCCCCTCTCAGATCCCGCAAATCGGAATTCACATAATTCCGA
CTGTAGTGGTGCTACAGACCTAAAATTTTGACTGTAGGACCAGATCATAA
ATACAATTAGGATAAAACAAAAAGTTTTTGTACAAAAATTAAAATTTATC
GATATTTTGAATCCGACAGCAGATCGCTGTGTGGCATCTTTTGCTTTAAT
CAGGCTATCATGTAGTCAAGTTTCTAAGTTAAAAGTACTTAAAAGATGTA
TAACTGTTACCTTAGTTAAAAAAGAAGGGAATATTTTTTTACCAAAGGCA
AAAATGATAACATCTACCGTGAGATCAGGTAACTTGCATCACGTGAAGGC
AATCATGCATAGCCCTCAAATGAATGACCTGTCTGGTCATTAAAATACAA
CTATGCAGCTCTGCTCGCAGCTCTACTCCACCATTTTTGTTTTGATTTAA
CTGTATTTTAATGACCAGCCAGGTCATTCATTTAAGGGCTATGCATGTTA
GCCTCCACTGATGCAAGTTACCCGATCTCACGGTACGTTATTCCCAAAAC
CAATTAAAAATGAGACAAAATATTCCTCTTTTGTTTGGAACGCATTATTT
TACAACAAATTGTCATTTCTGATTGTGAGGGAAAATACTAGAATCTGATA
GGATGTAATAAATTGAGTCACAAGGAAGAGTTGTTTGCAATCAGGCGTTT
GTAAAATGTATATAGTAAAAAATTTTGAACAGAGGTTATACATCACGTCT
GACACTCTAATGTTCTTCTTTTTATAGTCAGAGGAAAGCAACAATGCACG
ACTGGAAATGATCCGTACATGCTCTATCAACAAATCACATGGATCACATG
AAAAACATGTCATCGACTTATGGGTTAGATCTTGGTTGCCTGAAAATGAA
AAAGTGATAGTGTCAGAAGCTGCTCACTAAACTTGCCAATACTCTCCATT
TAATTTTATGTTTGAAAAAAGTTGAATTTTATCATAGGATCAAAAATAGT
CGGAGCAAACACACGAAAACTTTTGCTTTGGGTACTTTCCTGGCTGGATG
GTCTTTTTTTGTTTCATTTTTCATTCTTCTTACTCAAAAAAGGAGAACCT
ACAATAACTGTTGTTTGATTACCATGTAAGTAATTGTAAGTGTCCTTGAT
AAGTTGCATTTCTAATTTAAGATAAAACTATTTTTTCTGATCTGGGAAAC
CTTTAAATAATTCAGTCTCTATGGATGAGGTTGTGAATGTCATCATATAA
ATACAGAGCAATTATTTGAATACATTGAAGGTTCTCCTTTATTTCTTTAA
GTGGGTATGTCAGTAAAATGATTAAACCTGGTAACAGTCTCTGACTTAAT
CAGAATTTTACTCCTTTGTCTGATTTCGTTTGTATAAAAATTTTCGGGTA
AGGACATGTTCATTAAAACGCACTACTTTTAACATTGCAAATTGTTTAGT
GGTCCCTGCATATTACAGAAAACATATTAAAGCAAAAAAAGTAACATCGT
AAATTCAAGAAAATGAGTCTTTTTGAGGGTGTGTACTCAGTTATCCATTT
TCTTGCGCAGCTTTCCTTCCCCTTAAAAATTGGCTAGAAGACCCAGTTTT
CATTATTGCATAGGTACTACTCTTTATTCCCAGACGTTTTTTTTTTATTG
TCACAAAATAAAGATATGCAATGTTGAGTGACAGCACCTAGTTTAGTAGT
GCGTTTTAATGAATATGTTTTCTGTGAGAAAGGTTTTAAGTTGTTTTATT
TTATTTTTAATTCAATTAATTATTGAACGATTTTTATAAGATTACTTTCT
GATTGAACATTCTTTGTTGTTTTTTCCATAGCACTCGATATTTAAAATCA
CGTCAGAATTTTTTCTAAATATCTTGTATTAATGAAATCAAGATAATTTG
AAAGATGAATAGCACTTTGAGGTTGAAATATTTCTATTCAACCTCGTTCC
CATGACTACTTTCTTTTTTTGATTAATGCGGAGATTAGCCCTGGACCTAG
CTAGATTTTGATCGCCTGTATGAGGCGATTTTCAGAAAATATTGATTGAA
AAGCATTACATACTATACTATCAATGCATCAGAGTGAATTTGAGTTTTTC
TTAGAGAAAAGTGGTTTTTAGTAACAATTGGCCCAAATTGAGGAGTTTTC
TTTTTTAGACAAAAATTCTAACGGTTCTTTTAAATTATCATGAAATGTTT
TTAAAGGCATTTAATTGAATAAGCATTTTGAGCGTTTAAGTTTGTTCTGT
AAAAAAGGTCAATTTTTTATCAAACAGTACCGTCATTTCTTACAAATAAT
CTCATTTTTTTTAAATCAGTCAATTTTTGGGTAGTTTTTACTTTGATTAT
TATGTTGAATTATTCTTAAAAAAGCTTGTATATGTATTAGCCCCCCCCCC
CCCACCCCCCCTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCGCAATCACGCAATTTTTTTTCGAAATTCACGCATTCACGCAAATTT
TCCTCGAGTTTCACGCAATAACCCGATTTTTCAGGAAATCGGAAAATTTT
CAGAAAAAATTGGGCAAAGATTGGAAAATCGGGAAAACTGCACAAAATCG
GTGGAAAAAAGGGGAAATTCACGTATTCACGCATAAAATAGCCCAGATTC
ACGGATTCATGCAATCAAAAAGTGAATTTTCACGTTCACGCAAGTGTTTT
TAATTCACGCATTCACGCATTTTTTTCCAATTTTCACGCATTCACGCAAA
CCACTGGGGGGGGGGGGCCATGTATGTTACTCAAATTTTAGTTGGAAATA
TAACAAAAACGATGGTAGAGATGGAAGATTCGAATAACTTATAACATTTT
ACTATAATANAACCCGGGGGGGGGGGGGGCCATGTATGTTACTCAAATTT
TAGTTGGAAATATAACAAAAACGATGGTAGAGATGGAAGATTCGAATA Coding sequence (CDS) from alignment at sc0000410:154938..158735- >TCONS_00022277 ID=TCONS_00022277|Name=TCONS_00022277|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at sc0000410:154938..158735- (Clytia hemisphaerica)
TCAGAGGAAAGCAACAATGCACGACTGGAAATGATCCGTACATGCTCTAT
CAACAAATCACATGGATCACATGAAAAACATGTCATCGACTTATGGGTTA
GATCTTGGTTGCCTGAAAATGAAAAAGTGATAGTGTCAGAAGCTGCTCAC
TAAATGATCTTAAAGTTGCTATTGTCGTTTAATTTTGTCCTCAATATTTT
ACTAATAACTGTAATGGCTGAGGAAATTCGAGGACAGCTTGTAGGGGGGC
TAAAGGAGCAAGAAATAAAGATTCTTGACAGCGTTGTTGGGAACGGAAAG
ACACTTTGGGATTACCTTCAAAATAAGATTGAAGAGTATGCTAAACAAAG
AAACAGTTTATACATGTATGGTATCAATGATATTCATGTCCAGTCACAAG
TTGTCCAAGGGGTTTTATACAAAGTAACCTTGGATTTAGCACCAACTGAT
TGCCACAACAACAAGTTTTTGTCAGAGGAAAGCAACAATGCACGACTGGA
AATGATCCGTACATGCTCTATCAACAAATCACATGGATCACATGAAAAAC
ATGTCATCGACTTATGGGTTAGATCTTGGTTGCCTGAAAATGAAAAAGTG
ATAGTGTCAGAAGCTGCTCACTAAATGATCTTAAAGTTGCTATTGTCGTT
TAATTTTGTCCTCAATATTTTACTAATAACTGTAATGGCTGAGGAAATTC
GAGGACAGCTTGTAGGGGGGCTAAAGGAGCAAGAAATAAAGATTCTTGAC
AGCGTTGTTGGGAACGGAAAGACACTTTGGGATTACCTTCAAAATAAGAT
TGAAGAGTATGCTAAACAAAGAAACAGTTTATACATGTATGGTATCAATG
ATATTCATGTCCAGTCACAAGTTGTCCAAGGGGTTTTATACAAAGTAACC
TTGGATTTAGCACCAACTGATTGCCACAACAACAAGTTTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022277-exon-sc0000410-1575043694:158227..158735 | TCONS_00022277-exon-sc0000410-1575043694:158227..158735 | Clytia hemisphaerica | exon |
| TCONS_00022277-exon-sc0000410-1575043694:154938..157108 | TCONS_00022277-exon-sc0000410-1575043694:154938..157108 | Clytia hemisphaerica | exon |
| TCONS_00022277-exon-sc0000410-1510915933:158227..158735 | TCONS_00022277-exon-sc0000410-1510915933:158227..158735 | Clytia hemisphaerica | exon |
| TCONS_00022277-exon-sc0000410-1510915933:154938..157108 | TCONS_00022277-exon-sc0000410-1510915933:154938..157108 | Clytia hemisphaerica | exon |
| TCONS_00022277-exon-sc0000410-1491911889:158227..158735 | TCONS_00022277-exon-sc0000410-1491911889:158227..158735 | Clytia hemisphaerica | exon |
| TCONS_00022277-exon-sc0000410-1491911889:154938..157108 | TCONS_00022277-exon-sc0000410-1491911889:154938..157108 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000410 | supercontig | sc0000410:154938..158735 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004869 | cysteine-type endopeptidase inhibitor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004869 |
cysteine-type endopeptidase inhibitor activity |
Blast
The following BLAST results are available for this feature:
|
