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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022267 ID=TCONS_00022267|Name=TCONS_00022267|organism=Clytia hemisphaerica|type=transcript|length=972bp
GGTTgatttacttgatattttttcgtgaaaatcataccagattaaagaaa
taattattcaaaatgTGTATCGAGGAGTTAAAAAAGTTTCCATTTTATGG
ATGCTATAAAATCTGTCAAAGTTCTCCTTAAGTCTGTTATCTAATTCACA
ACTCAGTCTAACGAACGATCTTTTTGTCAGGTTTGACTCTTGCAGAACAG
GAAGAAGAGAGAGAACGGAAAAATGCCAGGAAGAATTATTACAGAAATCA
AAAGATCATTGACAGACAGagggaagaagaaaaaagacgcTTGGATAAAC
GCATACCCTGCTCTTTCTACCAAAAGCTTGGTCGCTGCAATAATgGCGAT
GCTTGCCGTTTTTCACACGACTTCGAAATCATTAAAACTGATGTCTGCAA
ATTTTATCTAACTGGGGCTTGTCTTAAAGGAAAGAATTGCATATATTATC
ACGGTGAATGGCCGTGCAAGTTCTTCCATTTGAAAGGCTTTTGCAAAGAA
GGGGACAACTGCAAGTTTTCACATCAACCAATGACAGATCAAATGAAAAA
ACTCTTCGATGATCGAACCGAGTTCGAGAAGTCACAGAAGCAAATGGTTG
AATTTGATTCCAACATCAAATCATCTAATGAATTGCAATCAGACCAACCA
GAGGAAGTGAGCTTTACCACCATAACTACTGCCATTACTTCACCCGCCGC
CATCACTACACCTAATGCGGAAAACGAACAACCTTCAACTGAATCTACTG
CTCCTGTGGTGAATCCTATTGATTTGTTACCCTCGCTATATTCTGATCTA
AgctaagctcagaatgattttaagAAATCTAGAACGTTAGCTATATTTTT
GGACCATAAAGTGATTGGACCAAGAAATAATTACTAATtggcaaatattt
ttttactaaaaGTTCAACTGTCTACCAAATTATTCTTTCCCGAACAGATT
TGGAAATACTTTAGGCGTccaa Run BLAST on NCBI transcript from alignment at sc0000410:169876..175665+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022267 ID=TCONS_00022267|Name=TCONS_00022267|organism=Clytia hemisphaerica|type=transcript|length=5790bp|location=Sequence derived from alignment at sc0000410:169876..175665+ (Clytia hemisphaerica)
GGTTgatttacttgatattttttcgtgaaaatcataccagattaaagaaa
taattattcaaaatgTGTATCGAGGAGTTAAAAAAGTTTCCATTTTATGG
ATGCTATAAAATCTGTCAAAGTTCTCCTTAAGTCTGTTATCTAATTCACA
ACTCAGTCTAACGAACGATCTTTTTGTCAGGTTTGACTCTTGCAGAACAG
GAAGAAGAGAGAGAACGGAAAAATGCCAGGAAGAATTATTACAGAAATCA
AAAGATCATTGACAGACAGagggaagaagaaaaaagacgcTTGGATAAAC
GCATACCCTGCTCTTTCTACCAAAAGCTTGGTCGCTGCAATAATGTGAGT
GAAGTTTATCGAGAATTATTACATGAATTTCTAAATATTGGTCGATTGGT
TAGGATCACGAAAAGCGAACGTAATAGACAATTTCACAATCGAAAtagat
catgggtaatcaggactgattgcgcatccataacggctttctgttggcta
gacgcaaaaatcttcaaaatttttttaaaactttagaccaatatagtaag
tcgtcattaatGCACAGTGGTCCTGATTTACATTACGCTTTCCGGCTGTG
AAATGGCCTAAGGTCGTTAAATTTGGTGAGTTTAGTACGGAGGGAGAGTC
TCAAGGCTACCCTCATCTCTATTACTCACATCTCGAACGACTACCAATTC
CTTTCTCTTTGAGCTAATGTATGGAGGCCAACGGTCCCGCCTGTATTAGG
AGCCTTGTTATGAATTTATATTTCGCGAATCTGGAGTGGCCCATATATAA
CTATATTCTTCGGGAATTAACTTTCGCAAATGGCGACCTTTGGCATTTCT
CGCGGAACTTAATATTCGCGATTTCGCCGACAAATCGCAAACTTTTGCcc
tttttcgaaagtttctgACAAGTAAGAAATTATTCGAGAAATTCGCTGAA
GTTTTTCCTCGCGAAAAGTacatttttttgccattttatccccaattttc
agtttttctgcATTTGTATCTTATCGCTTTTTTGCCTCAAAAATTGGATA
ACATtctaaaactgaaaaaaagttaaattcgcaaatttttgcgattttgt
aacctcgcgaaagtttctgcccgcgaaaagTTCTgctcttaagggctctg
accatagttgGAAAAATGATTtcagtatttgaacataaaagttatgtttt
acgttctttaaagggacccctcgcttaaaaatgataacaagacaCTCACT
TCATATTCATATGAAAAGCAACTTCCCAAAGTATTAGCACGCAAAACTCT
TTTTTCGATCCATAATTAgaaatcataaattttgatgttcactcaACTTT
CAGAAGTTTCAAATGGCTTCTGAAGGCCTTCGAATTTTCTTGCGCTCTTG
TCGCACCAAGTTGTCGATACAAATGCACCGGAAAATTACAGTACGAGGTG
TAGAGGCCGGCTCTGGTTCGAACAGTCTAGAATCCGCGCTCTTCTCCTAA
GAAAAACCCGTTGCTTGGAGTCGAGTTGCGGGTTTATGGAGAATCGGTAT
CGGCTTCAGAACTCCCAATGAGCCCCGGttgtgttggtttcagtcagacg
gagacgccatactgttttcagaggaatttttcGATATCTCTGCAGGAACT
AGCAGTAAGTTTGATGTCCTTTGAATATGCTGTTAGGGGTTTTTGGACCA
ATATAGTTTGATTTCCTAAAGATCACAaacaagcgaggggtccctttaac
acttttaacaaagaattgccttttatataatatgttgcatcaccttcttt
tataaaaagtgttaagttttaatgggtaattaacctttatgtttcgaagt
tttttcaaactgtccgcaaagaattgaactgttttaaattcttcggaaag
attttctaaattaatgtattaaaagttatggctgtttttctatgaaaaat
tgggatggaaaattggtcaaaaagcactattttcaagatttcgaagcaaa
taagcttttagaaaaatttccccaaaaattatttttagtttgataaaaga
tacaccgtgtaccgcaaattttttttcaaaatgttttttttcttcgctga
aactaagctcttcaaagttgaaatactcttcttcgcgaaactcttcattt
tcttcttcatcaaattttttcattgcgattcttaaattttcagactcgaG
GATAATTGGCCTACTGtaatagaaaatgtataacatgccacagttatgtg
ggctacatcaagtagaagtggcaaatataaaaaattcactatggtcagag
cccttaaaagtAGTACCTACAATTCGAACGCTACTTCTTATGTTAATCTG
caccacaagtgattttgtgTTACAGGGAAAATATTCCATCACTTTCAAGG
GTGAAGGTGTTATGTAGTGTTATCGAACAGCAACAACAATAAAGACTAGA
TTCATTCATTTTGACCATCACTCGAATCTCACGATAAGAAAATATTGTTG
GTACTTAATTTCTgttgaatttctaaaattttgcatattttgttttcttt
tttgacaggGCGATGCTTGCCGTTTTTCACACGACTTCGAAATCATTAAA
ACTGATGTCTGCAAATTTTATCTAACTGGGGCTTGTCTTAAAGGAAAGAA
TTGCATATATTATCACGGtaaaatcctttgtttttacTTCTTTCATAATA
ACAACAAGATAATCTTTTATGAAGCTAGCCAATTGAATATTGTACAGTGC
CGTAGCATCTGGGGGTCAAGTGGGGGGGGCTATCCCCcccaataatattt
ttcaaaaatggttattttgcaaaatgccaagtttttcttttttaatttgt
cataactGTCTTTTAAGtgatgttttgagtgcattttcaagcaatctaga
gctcaaattttcaaaatttcccccctcgggcaaaaccatggttggccctc
gcggtgtcactaaactttttagccccccccccccccaatatgaaaatgct
tcctactgTTGTAAATGACTCAAAACTACAATGACGGAGCAGATTTTCAA
AGCAAAGTTTCTTTATTGCTGAGAAAACTTCCACTCAAATGGGTTTGACG
GAAACTATTGccgaactttttttttaatttgtttatgttttttagtACAC
GTTACAGCTTCATTGATGTCAATAAACACTTTTTAAATGGACTTTAGACA
CCTCTGTAGCAtttgttcaaaaatattttgcggatAAAGACATTAAAAAA
TACCCTTTGGACTTGGGAATATGATCTCCAGTAGCTGATACACAAATGCT
TTCTGTCTTTTTAAAGGTGAATGGCCGTGCAAGTTCTTCCATTTGAAAGG
CTTTTGCAAAGAAGGGGACAACTGCAAGTTTTCACATCAACCAATGACAG
ATCAAATGAAAAAACTCTTCGATGATCGAACCGAGGTAAAAAATTAGGAA
GTTAACCATTCTGTTTGGTGAAGATcctattttttcaagaacttgGGATT
TTTAAGAGTTGATTTGTGATAAAGCTTGTCCTAGTGTCCTTTTAGAAATT
GACCAGGAGAGTACCCGCATGCAAAAAGTACCGCCGGTATGTGCCGCCTT
TAACGGTCGGAAAACGTTCAAGTCTAATTTCAGTCCCTTTAAGGGTTATA
AAAGGCGGAAAGATCCCGATTTTGCCGCTTAAAAAAGCtaacttttgaaa
taatgtCCCGACattctcaaattttcatttttccctcGATTTTTGAcaca
aagttttcaaattttcgaaatttgggcAGCACTTAGTCAATACCCGGAAA
ACGTAGCCTTTCGAATCATCACGTGGAATATAAATTTgatcgagttaagg
aaattttggaaatttaacggaattttgagttatggagtaaggtttataag
ttattgttaactgaagggactagAAAACTTGTTTTAGTTAAGGAGAcaat
cgagttatagaggttcgagttaaagagacactACTGTATTCCCCTCCGGG
TTTTAGGGTAATCATCCCCCGATACAAAAGCTGGAACTGGAAGATTTCTC
CCGAACAGCTTTTCTCCGAGGGCAGTTACCACCGATAAGAACCTAGAAAA
TTACATCCTCCTCGGCCCAAGGATGATTCATTCTGAAAGCTCGCAAGGTT
CATAATAGCCGTAGCTTAAAGGTACAGTACTCGACTGCAGTACGCATGCT
CGTCGTAGTCAAACACGCTCAATGACTAAATTCAAAAGAGAGTGGGGTAT
GGTAGAAAGATTGGCATTGTTACAGTTTAAGCAAGTAACAATTGATGATT
GCTAATACtttggtcgtgttacaaaaatacaggttgcctaatattttatg
aaaatgagTTTAAAATTATGAAGAACCATTAGGGTTCTTTCTAGAGGAAA
CCGCAAAAGAGGCCATGTCTTCAACCAGCTCGGATATTCGGGGATTTTTT
GAGGTCGGGTTTTCATAAACATAAAATTTGCAGCTTTTACAATTAACGAA
AGCCTTCAGAAGTTTCTAACTgaataaaattataaatatttCCATTATtg
acttaaccctattcggactaggggggggggctctttctgttaagaggtca
aactattggtaataacttctgaaataatagagcttttgccgtgaaatttt
ctgtaaattcctaacttttattttgcttcaaaataaaaaaaaaatttgac
acttaaatattttcacaccttgagcatgatgacatttctgacagtaaggt
gtcacaaaaattgacacttttccaatacaaattNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatttttaatgtcaa
atatatcgttcaaaccgtaatttattgaatatttaggataaaataagcat
tttaaactcaggcaacttttttctaaagcctttgatagaatacaatagct
atttataagaacaaggaaattttcgatttttgctcactttgggcatgatg
agtgacgtcatcaaacaaattttttttgtcaaaagttaccttacgtgaca
aggaacttttgtgccaaatttcatccaaaaagaccaactagatcaaaagt
taaggggtggtacaggaaaagcccccccccccctagttctgaaccgcccc
taaaagcctgggttgaatagggttaaggcttCTCAATTTTACATTGATTC
CATGATAGATATTTTATATTGAGACCATGCAGATTCTGGGGAGAATATTc
taatttcatttttgaaaaaaaagatcgAGTGAAAATGAACTTAAGGCTGT
CTTGATACTTACTGGTCGTTACAGCAGTATGTAATGACTGATCAAAATAT
GTGAAACGCCGTATTAAATATTATTTATCTTTTCTATCAGTTCGAGAAGT
CACAGAAGCAAATGGTTGAATTTGATTCCAACATCAAATCATCTAATGAA
TTGCAATCAGACCAACCAGAGGAAGTGAGCTTTACCACCATAACTACTGC
CATTACTTCACCCGCCGCCATCACTACACCTAATGCGGAAAACGAACAAC
CTTCAACTGAATCTACTGCTCCTGTGGTGAATCCTATTGATTTGTTACCC
TCGCTATATTCTGATCTAAgctaagctcagaatgattttaagAAATCTAG
AACGTTAGCTATATTTTTGGACCATAAAGTGATTGGACCAAGAAATAATT
ACTAATtggcaaatatttttttactaaaaGTTCAACTGTCTACCAAATTA
TTCTTTCCCGAACAGATTTGGAAATACTTTAGGCGTccaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022267-exon-sc0000410-1491911889:169876..170219 | TCONS_00022267-exon-sc0000410-1491911889:169876..170219 | Clytia hemisphaerica | exon |
| TCONS_00022267-exon-sc0000410-1510915933:169876..170219 | TCONS_00022267-exon-sc0000410-1510915933:169876..170219 | Clytia hemisphaerica | exon |
| TCONS_00022267-exon-sc0000410-1575043694:169876..170219 | TCONS_00022267-exon-sc0000410-1575043694:169876..170219 | Clytia hemisphaerica | exon |
| TCONS_00022267-exon-sc0000410-1491911889:172434..172542 | TCONS_00022267-exon-sc0000410-1491911889:172434..172542 | Clytia hemisphaerica | exon |
| TCONS_00022267-exon-sc0000410-1510915933:172434..172542 | TCONS_00022267-exon-sc0000410-1510915933:172434..172542 | Clytia hemisphaerica | exon |
| TCONS_00022267-exon-sc0000410-1575043694:172434..172542 | TCONS_00022267-exon-sc0000410-1575043694:172434..172542 | Clytia hemisphaerica | exon |
| TCONS_00022267-exon-sc0000410-1491911889:173192..173310 | TCONS_00022267-exon-sc0000410-1491911889:173192..173310 | Clytia hemisphaerica | exon |
| TCONS_00022267-exon-sc0000410-1510915933:173192..173310 | TCONS_00022267-exon-sc0000410-1510915933:173192..173310 | Clytia hemisphaerica | exon |
| TCONS_00022267-exon-sc0000410-1575043694:173192..173310 | TCONS_00022267-exon-sc0000410-1575043694:173192..173310 | Clytia hemisphaerica | exon |
| TCONS_00022267-exon-sc0000410-1491911889:175266..175665 | TCONS_00022267-exon-sc0000410-1491911889:175266..175665 | Clytia hemisphaerica | exon |
| TCONS_00022267-exon-sc0000410-1510915933:175266..175665 | TCONS_00022267-exon-sc0000410-1510915933:175266..175665 | Clytia hemisphaerica | exon |
| TCONS_00022267-exon-sc0000410-1575043694:175266..175665 | TCONS_00022267-exon-sc0000410-1575043694:175266..175665 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000410 | supercontig | sc0000410:169876..175665 + |
Blast
BLAST of TCONS_00022267 vs. Swiss-Prot (Human)
Match: ZC3H6 (Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens GN=ZC3H6 PE=1 SV=2) HSP 1 Score: 102.449 bits (254), Expect = 1.459e-23 Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 3
Query: 330 GRCNNGDACRFSHDFEIIK-TDVCKFYLTGACLKGKNCIYYHGEWPCKFFHLKGFCKEGDNCKFSHQPMTDQMKKLFD 560
GRC GD C+F HD E+ K ++CKFYL G C KG+NCIY H E+PCKF+H C +GDNCKFSH +T + KKL D
Sbjct: 284 GRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSHDDLTKETKKLLD 361
The following BLAST results are available for this feature:
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