TCONS_00022267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022267
Unique NameTCONS_00022267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length972

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022267 ID=TCONS_00022267|Name=TCONS_00022267|organism=Clytia hemisphaerica|type=transcript|length=972bp
GGTTgatttacttgatattttttcgtgaaaatcataccagattaaagaaa
taattattcaaaatgTGTATCGAGGAGTTAAAAAAGTTTCCATTTTATGG
ATGCTATAAAATCTGTCAAAGTTCTCCTTAAGTCTGTTATCTAATTCACA
ACTCAGTCTAACGAACGATCTTTTTGTCAGGTTTGACTCTTGCAGAACAG
GAAGAAGAGAGAGAACGGAAAAATGCCAGGAAGAATTATTACAGAAATCA
AAAGATCATTGACAGACAGagggaagaagaaaaaagacgcTTGGATAAAC
GCATACCCTGCTCTTTCTACCAAAAGCTTGGTCGCTGCAATAATgGCGAT
GCTTGCCGTTTTTCACACGACTTCGAAATCATTAAAACTGATGTCTGCAA
ATTTTATCTAACTGGGGCTTGTCTTAAAGGAAAGAATTGCATATATTATC
ACGGTGAATGGCCGTGCAAGTTCTTCCATTTGAAAGGCTTTTGCAAAGAA
GGGGACAACTGCAAGTTTTCACATCAACCAATGACAGATCAAATGAAAAA
ACTCTTCGATGATCGAACCGAGTTCGAGAAGTCACAGAAGCAAATGGTTG
AATTTGATTCCAACATCAAATCATCTAATGAATTGCAATCAGACCAACCA
GAGGAAGTGAGCTTTACCACCATAACTACTGCCATTACTTCACCCGCCGC
CATCACTACACCTAATGCGGAAAACGAACAACCTTCAACTGAATCTACTG
CTCCTGTGGTGAATCCTATTGATTTGTTACCCTCGCTATATTCTGATCTA
AgctaagctcagaatgattttaagAAATCTAGAACGTTAGCTATATTTTT
GGACCATAAAGTGATTGGACCAAGAAATAATTACTAATtggcaaatattt
ttttactaaaaGTTCAACTGTCTACCAAATTATTCTTTCCCGAACAGATT
TGGAAATACTTTAGGCGTccaa
Run BLAST on NCBI

transcript from alignment at sc0000410:169876..175665+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022267 ID=TCONS_00022267|Name=TCONS_00022267|organism=Clytia hemisphaerica|type=transcript|length=5790bp|location=Sequence derived from alignment at sc0000410:169876..175665+ (Clytia hemisphaerica)
GGTTgatttacttgatattttttcgtgaaaatcataccagattaaagaaa
taattattcaaaatgTGTATCGAGGAGTTAAAAAAGTTTCCATTTTATGG
ATGCTATAAAATCTGTCAAAGTTCTCCTTAAGTCTGTTATCTAATTCACA
ACTCAGTCTAACGAACGATCTTTTTGTCAGGTTTGACTCTTGCAGAACAG
GAAGAAGAGAGAGAACGGAAAAATGCCAGGAAGAATTATTACAGAAATCA
AAAGATCATTGACAGACAGagggaagaagaaaaaagacgcTTGGATAAAC
GCATACCCTGCTCTTTCTACCAAAAGCTTGGTCGCTGCAATAATGTGAGT
GAAGTTTATCGAGAATTATTACATGAATTTCTAAATATTGGTCGATTGGT
TAGGATCACGAAAAGCGAACGTAATAGACAATTTCACAATCGAAAtagat
catgggtaatcaggactgattgcgcatccataacggctttctgttggcta
gacgcaaaaatcttcaaaatttttttaaaactttagaccaatatagtaag
tcgtcattaatGCACAGTGGTCCTGATTTACATTACGCTTTCCGGCTGTG
AAATGGCCTAAGGTCGTTAAATTTGGTGAGTTTAGTACGGAGGGAGAGTC
TCAAGGCTACCCTCATCTCTATTACTCACATCTCGAACGACTACCAATTC
CTTTCTCTTTGAGCTAATGTATGGAGGCCAACGGTCCCGCCTGTATTAGG
AGCCTTGTTATGAATTTATATTTCGCGAATCTGGAGTGGCCCATATATAA
CTATATTCTTCGGGAATTAACTTTCGCAAATGGCGACCTTTGGCATTTCT
CGCGGAACTTAATATTCGCGATTTCGCCGACAAATCGCAAACTTTTGCcc
tttttcgaaagtttctgACAAGTAAGAAATTATTCGAGAAATTCGCTGAA
GTTTTTCCTCGCGAAAAGTacatttttttgccattttatccccaattttc
agtttttctgcATTTGTATCTTATCGCTTTTTTGCCTCAAAAATTGGATA
ACATtctaaaactgaaaaaaagttaaattcgcaaatttttgcgattttgt
aacctcgcgaaagtttctgcccgcgaaaagTTCTgctcttaagggctctg
accatagttgGAAAAATGATTtcagtatttgaacataaaagttatgtttt
acgttctttaaagggacccctcgcttaaaaatgataacaagacaCTCACT
TCATATTCATATGAAAAGCAACTTCCCAAAGTATTAGCACGCAAAACTCT
TTTTTCGATCCATAATTAgaaatcataaattttgatgttcactcaACTTT
CAGAAGTTTCAAATGGCTTCTGAAGGCCTTCGAATTTTCTTGCGCTCTTG
TCGCACCAAGTTGTCGATACAAATGCACCGGAAAATTACAGTACGAGGTG
TAGAGGCCGGCTCTGGTTCGAACAGTCTAGAATCCGCGCTCTTCTCCTAA
GAAAAACCCGTTGCTTGGAGTCGAGTTGCGGGTTTATGGAGAATCGGTAT
CGGCTTCAGAACTCCCAATGAGCCCCGGttgtgttggtttcagtcagacg
gagacgccatactgttttcagaggaatttttcGATATCTCTGCAGGAACT
AGCAGTAAGTTTGATGTCCTTTGAATATGCTGTTAGGGGTTTTTGGACCA
ATATAGTTTGATTTCCTAAAGATCACAaacaagcgaggggtccctttaac
acttttaacaaagaattgccttttatataatatgttgcatcaccttcttt
tataaaaagtgttaagttttaatgggtaattaacctttatgtttcgaagt
tttttcaaactgtccgcaaagaattgaactgttttaaattcttcggaaag
attttctaaattaatgtattaaaagttatggctgtttttctatgaaaaat
tgggatggaaaattggtcaaaaagcactattttcaagatttcgaagcaaa
taagcttttagaaaaatttccccaaaaattatttttagtttgataaaaga
tacaccgtgtaccgcaaattttttttcaaaatgttttttttcttcgctga
aactaagctcttcaaagttgaaatactcttcttcgcgaaactcttcattt
tcttcttcatcaaattttttcattgcgattcttaaattttcagactcgaG
GATAATTGGCCTACTGtaatagaaaatgtataacatgccacagttatgtg
ggctacatcaagtagaagtggcaaatataaaaaattcactatggtcagag
cccttaaaagtAGTACCTACAATTCGAACGCTACTTCTTATGTTAATCTG
caccacaagtgattttgtgTTACAGGGAAAATATTCCATCACTTTCAAGG
GTGAAGGTGTTATGTAGTGTTATCGAACAGCAACAACAATAAAGACTAGA
TTCATTCATTTTGACCATCACTCGAATCTCACGATAAGAAAATATTGTTG
GTACTTAATTTCTgttgaatttctaaaattttgcatattttgttttcttt
tttgacaggGCGATGCTTGCCGTTTTTCACACGACTTCGAAATCATTAAA
ACTGATGTCTGCAAATTTTATCTAACTGGGGCTTGTCTTAAAGGAAAGAA
TTGCATATATTATCACGGtaaaatcctttgtttttacTTCTTTCATAATA
ACAACAAGATAATCTTTTATGAAGCTAGCCAATTGAATATTGTACAGTGC
CGTAGCATCTGGGGGTCAAGTGGGGGGGGCTATCCCCcccaataatattt
ttcaaaaatggttattttgcaaaatgccaagtttttcttttttaatttgt
cataactGTCTTTTAAGtgatgttttgagtgcattttcaagcaatctaga
gctcaaattttcaaaatttcccccctcgggcaaaaccatggttggccctc
gcggtgtcactaaactttttagccccccccccccccaatatgaaaatgct
tcctactgTTGTAAATGACTCAAAACTACAATGACGGAGCAGATTTTCAA
AGCAAAGTTTCTTTATTGCTGAGAAAACTTCCACTCAAATGGGTTTGACG
GAAACTATTGccgaactttttttttaatttgtttatgttttttagtACAC
GTTACAGCTTCATTGATGTCAATAAACACTTTTTAAATGGACTTTAGACA
CCTCTGTAGCAtttgttcaaaaatattttgcggatAAAGACATTAAAAAA
TACCCTTTGGACTTGGGAATATGATCTCCAGTAGCTGATACACAAATGCT
TTCTGTCTTTTTAAAGGTGAATGGCCGTGCAAGTTCTTCCATTTGAAAGG
CTTTTGCAAAGAAGGGGACAACTGCAAGTTTTCACATCAACCAATGACAG
ATCAAATGAAAAAACTCTTCGATGATCGAACCGAGGTAAAAAATTAGGAA
GTTAACCATTCTGTTTGGTGAAGATcctattttttcaagaacttgGGATT
TTTAAGAGTTGATTTGTGATAAAGCTTGTCCTAGTGTCCTTTTAGAAATT
GACCAGGAGAGTACCCGCATGCAAAAAGTACCGCCGGTATGTGCCGCCTT
TAACGGTCGGAAAACGTTCAAGTCTAATTTCAGTCCCTTTAAGGGTTATA
AAAGGCGGAAAGATCCCGATTTTGCCGCTTAAAAAAGCtaacttttgaaa
taatgtCCCGACattctcaaattttcatttttccctcGATTTTTGAcaca
aagttttcaaattttcgaaatttgggcAGCACTTAGTCAATACCCGGAAA
ACGTAGCCTTTCGAATCATCACGTGGAATATAAATTTgatcgagttaagg
aaattttggaaatttaacggaattttgagttatggagtaaggtttataag
ttattgttaactgaagggactagAAAACTTGTTTTAGTTAAGGAGAcaat
cgagttatagaggttcgagttaaagagacactACTGTATTCCCCTCCGGG
TTTTAGGGTAATCATCCCCCGATACAAAAGCTGGAACTGGAAGATTTCTC
CCGAACAGCTTTTCTCCGAGGGCAGTTACCACCGATAAGAACCTAGAAAA
TTACATCCTCCTCGGCCCAAGGATGATTCATTCTGAAAGCTCGCAAGGTT
CATAATAGCCGTAGCTTAAAGGTACAGTACTCGACTGCAGTACGCATGCT
CGTCGTAGTCAAACACGCTCAATGACTAAATTCAAAAGAGAGTGGGGTAT
GGTAGAAAGATTGGCATTGTTACAGTTTAAGCAAGTAACAATTGATGATT
GCTAATACtttggtcgtgttacaaaaatacaggttgcctaatattttatg
aaaatgagTTTAAAATTATGAAGAACCATTAGGGTTCTTTCTAGAGGAAA
CCGCAAAAGAGGCCATGTCTTCAACCAGCTCGGATATTCGGGGATTTTTT
GAGGTCGGGTTTTCATAAACATAAAATTTGCAGCTTTTACAATTAACGAA
AGCCTTCAGAAGTTTCTAACTgaataaaattataaatatttCCATTATtg
acttaaccctattcggactaggggggggggctctttctgttaagaggtca
aactattggtaataacttctgaaataatagagcttttgccgtgaaatttt
ctgtaaattcctaacttttattttgcttcaaaataaaaaaaaaatttgac
acttaaatattttcacaccttgagcatgatgacatttctgacagtaaggt
gtcacaaaaattgacacttttccaatacaaattNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatttttaatgtcaa
atatatcgttcaaaccgtaatttattgaatatttaggataaaataagcat
tttaaactcaggcaacttttttctaaagcctttgatagaatacaatagct
atttataagaacaaggaaattttcgatttttgctcactttgggcatgatg
agtgacgtcatcaaacaaattttttttgtcaaaagttaccttacgtgaca
aggaacttttgtgccaaatttcatccaaaaagaccaactagatcaaaagt
taaggggtggtacaggaaaagcccccccccccctagttctgaaccgcccc
taaaagcctgggttgaatagggttaaggcttCTCAATTTTACATTGATTC
CATGATAGATATTTTATATTGAGACCATGCAGATTCTGGGGAGAATATTc
taatttcatttttgaaaaaaaagatcgAGTGAAAATGAACTTAAGGCTGT
CTTGATACTTACTGGTCGTTACAGCAGTATGTAATGACTGATCAAAATAT
GTGAAACGCCGTATTAAATATTATTTATCTTTTCTATCAGTTCGAGAAGT
CACAGAAGCAAATGGTTGAATTTGATTCCAACATCAAATCATCTAATGAA
TTGCAATCAGACCAACCAGAGGAAGTGAGCTTTACCACCATAACTACTGC
CATTACTTCACCCGCCGCCATCACTACACCTAATGCGGAAAACGAACAAC
CTTCAACTGAATCTACTGCTCCTGTGGTGAATCCTATTGATTTGTTACCC
TCGCTATATTCTGATCTAAgctaagctcagaatgattttaagAAATCTAG
AACGTTAGCTATATTTTTGGACCATAAAGTGATTGGACCAAGAAATAATT
ACTAATtggcaaatatttttttactaaaaGTTCAACTGTCTACCAAATTA
TTCTTTCCCGAACAGATTTGGAAATACTTTAGGCGTccaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012486XLOC_012486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022267-exon-sc0000410-1491911889:169876..170219TCONS_00022267-exon-sc0000410-1491911889:169876..170219Clytia hemisphaericaexon
TCONS_00022267-exon-sc0000410-1510915933:169876..170219TCONS_00022267-exon-sc0000410-1510915933:169876..170219Clytia hemisphaericaexon
TCONS_00022267-exon-sc0000410-1575043694:169876..170219TCONS_00022267-exon-sc0000410-1575043694:169876..170219Clytia hemisphaericaexon
TCONS_00022267-exon-sc0000410-1491911889:172434..172542TCONS_00022267-exon-sc0000410-1491911889:172434..172542Clytia hemisphaericaexon
TCONS_00022267-exon-sc0000410-1510915933:172434..172542TCONS_00022267-exon-sc0000410-1510915933:172434..172542Clytia hemisphaericaexon
TCONS_00022267-exon-sc0000410-1575043694:172434..172542TCONS_00022267-exon-sc0000410-1575043694:172434..172542Clytia hemisphaericaexon
TCONS_00022267-exon-sc0000410-1491911889:173192..173310TCONS_00022267-exon-sc0000410-1491911889:173192..173310Clytia hemisphaericaexon
TCONS_00022267-exon-sc0000410-1510915933:173192..173310TCONS_00022267-exon-sc0000410-1510915933:173192..173310Clytia hemisphaericaexon
TCONS_00022267-exon-sc0000410-1575043694:173192..173310TCONS_00022267-exon-sc0000410-1575043694:173192..173310Clytia hemisphaericaexon
TCONS_00022267-exon-sc0000410-1491911889:175266..175665TCONS_00022267-exon-sc0000410-1491911889:175266..175665Clytia hemisphaericaexon
TCONS_00022267-exon-sc0000410-1510915933:175266..175665TCONS_00022267-exon-sc0000410-1510915933:175266..175665Clytia hemisphaericaexon
TCONS_00022267-exon-sc0000410-1575043694:175266..175665TCONS_00022267-exon-sc0000410-1575043694:175266..175665Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000410supercontigsc0000410:169876..175665 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.8026	33.1908	20.585	17.3063	10.5971	7.18477	7.29318	6.71585	3.72236	3.9798	4.42819	2.72511	4.14384	5.07418	6.89116	7.79196	5.93396	7.5132	3.01511	3.41371	5.12505	5.46014	25.8037	21.3751	13.8285	8.95549	3.63418	3.60632	15.7923	16.8786
Blast
[Close]
BLAST of TCONS_00022267 vs. Swiss-Prot (Human)
Match: ZC3H6 (Zinc finger CCCH domain-containing protein 6 OS=Homo sapiens GN=ZC3H6 PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.459e-23
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 3 
Query:  330 GRCNNGDACRFSHDFEIIK-TDVCKFYLTGACLKGKNCIYYHGEWPCKFFHLKGFCKEGDNCKFSHQPMTDQMKKLFD 560
            GRC  GD C+F HD E+ K  ++CKFYL G C KG+NCIY H E+PCKF+H    C +GDNCKFSH  +T + KKL D
Sbjct:  284 GRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSHDDLTKETKKLLD 361
The following BLAST results are available for this feature:
BLAST of TCONS_00022267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZC3H61.459e-2357.69Zinc finger CCCH domain-containing protein 6 OS=Ho... [more]
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