TCONS_00022265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022265
Unique NameTCONS_00022265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2070

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022265 ID=TCONS_00022265|Name=TCONS_00022265|organism=Clytia hemisphaerica|type=transcript|length=2070bp
TTAGTTTTGGTGTAATATGTAACGTAGTTTAACTCATTGCAATGATAATA
TTTCTCCGCGACATGGATTCTAAGAAAAGACCTGTGGACCTACTATTAAA
GAACATCAAGTAAAGTTGAAATGCCTCGCTTATTCAGTTATCAAGAGGAG
TATGTTCAACTTGACGCAATCAAAGTAACGAAATGAAAACATAAAGATGC
TCTCCATCGCACGCCACCTCATTGTTATAATTCACAGAGTacTAAACACA
CACACAGAAAAGTTGGAGATCACAAAAACATCATCTTTCATCAAATGACC
AGTTGAGAGTAAAaagggaaagaaaaaacatcacATCATTGACATTAAAG
AAAAACGAttgaaaggagaaaaaaaataataggGACACGTTTTTTGTGTT
GTTCAATAAGGATTGTGGTTGGTTTTAAAGCACCCTGGGTGAAGTTTTGG
TGATAACCCTTTATAGTACCAAATAATCAAATATTGACATAAACTAAAGA
TGGATAACTCGAAGAAGGTTATAATAGCTTGTATATGTTTATGTGGACTT
GTAAATTATGTTGGAAGTACTTTGACAACTTTTACGACGACGCGACGACC
GCCTCCGCAGGCAGTTGACGTTGATTCAAAATCATTGATGAGAGCAGGGC
GAATGAGTTATGGAGGATTCAGAAAGGTGGTTACAAAAAAAATACCAAAA
GCTCAAAAAGAGTATGGAGGCTGCAGACGAAGAGTTATTCGAAGATTTAT
CGGTGACAGTGAACGAAATTGTACCAGCCTTCGACCATACCCCATCGCAT
GGTGCGAAGGAGTGTGTCTACCTGAGGGGAAATTCGATAAGAAACACCCT
TTGATGAGAttcaaagaatatttaaaaaagaacagTAAATCATACGAGTG
CGTTGCAGATCGAGTTGTCCGCCGAAAAGTAGAGATATATTGCCATGATG
ATGAACTTTTACACGTGTATCGAATAAACGTTATCAAGACGTGCAAATGT
AAACAGGTTGAAAACGAGGTTTCAAACACAGACGAAGAAGACGAAGTGGA
TAAAGGACAATCGATCGAGAATTCAGCAATAAGTATAAGTCAACAGGCGA
AACGGTTCAGTCACCGTTTGCATAATTTACAGAACAAACTAAGGAAAGTA
CAGTGAAGTCCTGGTGACGTATTGTATTAGAACGGGGTGATAAAATGCCG
AACGCCGTAAAATGAAGATGGTAGGAGAAAGCCATATAACACCCAGAAAT
GATGGATGCCTCAACGCGTAAAGAGAAAGAATTACAGCCTTCTGCCAGGC
TCACttattattcaatctttttaacACGCCTCCATGctaaatgcatttta
aacaccGGAAGTATTGGGTGAATACAGATATTATAAATAGTACAACAAAG
GAAAGCAAAGATACAATCCTTTCCAGAAATCATACGTTCTTGCGGAGAAA
ATGGACGAGTTTTGTTCAAAAAAATACACCATGATGTTAGCTTTTGACCG
ATTGGAACCAGCAATTCACAGAAGAATTGGATTGTTAAGATTCATATAGA
TTTAGAATAGTTTGTGGACAACTTAAAAACAATTACTTGATGACGATGTT
TATTTTCCTTCTAGACGCCCTCTTGGAAAGAGGCCAGAttctttattcaa
aaaaactgTTTGAGTAAAAATTTATATTAAAATGATATATTGAAATCCCC
CTCCCCAAAATCCCCTTTAACCTCTTTAATTTTACCCCTTGACAGAAATT
TAACCACTTTTCCAAGCATTTTGTTTAACGACCATTGTTGGATTTCATCT
TTTCGAGAAGTATATTTTGAAAGATGAGCCTTTTAATTATATCATTCAAA
TCAAATACGTTAGTTCCTAAATTTACATCATATAAATTTGACACAGAAAT
CGATTGACCGAATTTTACGTGCGGAAcgcttactcttaggtgccaaataa
acgcccctctccCACTTGTTAATATTCCGCCCCCCCcacggaccttatta
ggaccacCCGTTATATTTTCAGTTAGCAAGAAGAAGTcgccttattttgc
tccaaaaagcctgattctAG
Run BLAST on NCBI

transcript from alignment at sc0000410:99169..107108+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022265 ID=TCONS_00022265|Name=TCONS_00022265|organism=Clytia hemisphaerica|type=transcript|length=7940bp|location=Sequence derived from alignment at sc0000410:99169..107108+ (Clytia hemisphaerica)
TTAGTTTTGGTGTAATATGTAACGTAGTTTAACTCATTGCAATGATAATA
TTTCTCCGCGACATGGATTCTAAGAAAAGACCTGTGGACCTACTATTAAA
GAACATCAAGTAAAGTTGAAATGCCTCGCTTATTCAGTTATCAAGAGGAG
TATGTTCAACTTGACGCAATCAAAGTAACGAAATGAAAACATAAAGATGC
TCTCCATCGCACGCCACCTCATTGTTATAATTCACAGAGTGTAAGTTTTT
AGCGCTCTCCATCTTATAGGTGTAGCCAACCTGTAGGGCTTCTGTTTGAC
TAACAACGAAATTTGAGTTGTGATAGAGCTTGTAAAAAGTGAAATCTTTG
TGCGTGTTGTGTGTATGTGTTGATTGTAGATTGTGCGTGAATCGCGTTTT
TTTTGCGATGTATTTTTCTTTTGCAGTCAATGGAAAATAATCTTGAATGG
AagtgaaattttaaatattgTAGTATTTTTAAATGGAACATACTTTATTA
CAGCAAGTTTAATTCGATTGAGTTATATTTTGGATTGGGCTTGAGGTATA
ATGCAAAACATTGTGTTTTCGGTATATAAATATAAATCGATTTGATTATT
TAAAAATAGCTCATTAATTGTGACATCGTTATCGCGAACATTTGGATTTT
TGATAATCAGTTGATAATGAATAAAGCGGATTTTTTACGATACTTTCCAC
TTTTTCCGTGGGCTTTCCGTTGATATATTATTCGGAAATTCCTGTCTGTC
AAGCTTTAACTGGAAATTATCATTCAAAACAACTTTTGAAGACGTTTTTG
AAGGTTTTCCTTTGATGTTAAGATGAGAATTTGTTAGTTTTAGACCAGAA
GCCTCCTGTTTCATTTATATTGATTAAAATTTATCATCAAACATTAAAAT
TAACACctaagaaaattgaatatttatgCTAAATAgggaaagaaaaattt
cattgaatgGAAGTGTATATAGGATTAAATCCAGGTATTTTATTgaacaa
aattgtttttgattaTAAGGgggaaaaatatgtaaaatattttgaaaaaa
aaggaacgttttcacctttttttgcttgaaacttTTTAGAAAGTGCTTCA
ATACTAATTTAAAATTTACTAATGCATAACATCTCTCATAAACTGTGTTT
ATTAATGTTACACCTGCAGTCATACCTTAAGAAGACTTAAACATCACATT
GTTCAAAAGATTCGAATCAAAAATTCAACATTCATGGAATTGAGGCTATT
GAAGNTAAGAAGACTTAAACATTACATTGTTCAAAAGATTCGAATCAAAA
ATTCAACATTCATGGAATTGAGGCTATTGAAGcgaatgtttttattgcat
TGAACGTAAACTCAATAGATACGTAAGAGAAAGTATGGAAGGTCATGTTA
TGATAAAATACAACTTAAAGTTCAACGAAAAGATTTCAGTTGGTTGACGa
tctattttttaatgtttttcatgttatgatttcaattttgatttcttttt
tagacTAAACACACACACAGAAAAGTTGGAGATCACAAAAACATCATCTT
TCATCAAATGACCAGTTGAGAGTAAAaagggaaagaaaaaacatcacATC
ATTGACATTAAAGAAAAACGAttgaaaggagaaaaaaaataataggGACA
CGTTTTTTGTGTTGTTCAATAAGGATTGTGGTTGGTTTTAAAGCACCCTG
GGTGAAGTTTTGGTGATAACCCTTTATAGTACCAAATAATCAAATATTGA
CATAAACTAAAGATGGATAACTCGAAGAAGGTTATAATAGCTTGTATATG
TTTATGTGGACTTGTAAATTATGTTGGAAGTACTTTGACAACTTTTACGA
CGACGCGACGACCGCCTCCGCAGGCAGTTGACGTTGATTCAAAATCATTG
ATGAGAGCAGGGCGAATGAGTTATGGAGGATTCAGAAAGGTGGTTACAAA
AAAAATACCAAGTAAGTGAATTTTACTTATGGTCTACAGCGTGTTCATAA
AAAAGGAGTACAAAATTCTCAAGAAATATTCTATTATAAATATAGTCTTG
TGATTTTGCCTTTGTGTAGACACATTCAATTATTGACTATAGATTTTATC
TGAAGAAAAACTATGTGATCTTTTAACTCCCATCACAGTTATACGGAAAA
AAGACCAAATCATTTTTACAGACAGGTTTTTAATAAACGTGGACTCTAGG
TGCATAAGTTCTACAGGATGTGGAGACCTTATAGTGTTTAGCTAGATATA
AACTAGACATGACAGATAGTTCTAATATGTAGAAAGTAGACCAAGTTAAA
TGAGATTCGTAACAAGCTCTGGAGACTGGGCTAATTACCTCAAAATGACG
ACCAAtgccaaaaaaagaaattatatgACCATCAAAAATTCTCATAACTT
TACCTCCAAAGAGACTTAATATCAATTATCTGTTTGCTGGCTCCAAAAAT
AATCACTTTCACTCTTGATGcaaagcttgaaaaaaaaactaaaaagctTC
TTGTGAAGTAATCTTTGTTTGGATTTCTTAAAGTTATttgtattttgtaa
atctttcttcaaactttgaagTTTCATGCGTGGAATGAAATGACGTAAAG
AGTTGGAAATCACACATGTGAATTCTCCTTGAAACTCGCACTCAAAAATC
TAATCTAACTTTAATCCAAGCCTCTAttactcaaaataaaaaacattggt
TCCCTCAACTGATAAGTCAGTCATACAAAATACTCTTCGTtatccgaatc
tttctctaatttcgAAGATgattcttggtcccttgaatATCGAGAAAGAG
TCAAGTGTAGTTCCTTTAAAACGGTCGTTTCTATCAAGCGTCTAGGGAGA
AATCTGCGATTTATTGTAGAAGTTACAATGGGAGGAGTTCAGTTTTCCAA
TATTTAGACTATGTAGTCACTATAATAAGTTCTAAAGGCTAACTTGGAAA
CAGTAAACAATAACAAATAAACAACACTTAAGGAAAACGATTACCAATTT
ATGTATCATGCAGTGAAGTGGCCTTTAACTCGACCCTTTTTGAAATTATC
TCATATTCTCTAAGTGATGAATGAAGTAtaggaaaacaaagaaaatgtca
aaaaagtgtTGAAGATTCCAAATAGTCTCCTTGTTGCCATCAAGGCAAAA
GGGTGTAAAGTAAGCGTGACTGGGACGACGAAGACTTTTTTACTttgcta
attttgagatttcCCCTTTAACTTGTACTACATGAAAAGGGTCAATCTCA
AATTTTTAAGTTAACAAAAGTATTTAATGTCTTAAAGTTTTTCAGgcatt
aattttgagattggtGCTTTTCCTCCGATGGCAGCGAAATTGTGAATGCA
TGGGTGAAAAAGATGCATGAATTGCATAGACTAAGGATAGGTAAAAGGTG
GGCCCAATGAAAGAGAAATGACAATGAAAAAGCAAACATGGGAGTGTAAC
AGCCATCACCATTGAAGCATctaaatgaatgaaaaataagtGTCAATCCA
AAAAGTTATATTACCCTTCTCAAAACGATAAGAAAAACAACAGGGTAAAA
ACACTCAAACAGCTTTCAACAAACAGGGGACATGACAAGATGTAGCAACA
AACTTGCACCTTCACAACATATAAGAAAAACAATATTCATCAATTGTAGG
GGGTCAAAAAAACGCTCCTGTGGCGAAATAGTCTCGTAATTCTAATCCTG
TAAAAAATGTGCCTCCTCACTTGGAGTGACTTTTGAAATGTATGTTTTGA
AGGGTCGTTGAATGTACCTAAAGATTTATCTATACTTAATTGTGATAGAT
CATTGACCTTTGAGGGGATATTCCAAAGACATTGACCTAATGTGGGGTAA
AAATCGCAACAACATTCTACTCTGAGGAAGAGAATCACGCAACATAACTC
TCAGATTCTCTCTTCGATTCATGATATTCACATCGTATATTTTATACGAG
AGCACCCAAAATCGCAGGGGCGTTTGCCACTAGCTTTATtgcttaaattc
aaaattagtggcaaacaccGGTCTTTTTTGgatgcttccgtataaaacat
tacgtcatgaatatgaTGGATTCTTGCAACTGAAAGTTTTTTACAGAAAG
TAGCTACTGTATATCAATGATGCTCGGACCTTGCACCAATTTTCTGAaga
tgtgaaaaaagcttgaaACAACAGAGAATAAGGGACGTCGTGAATTGAAC
ACTGTCTTCTAACCATCATGAAGGGTCAAGTTCTCATCAGTTCAAAAAGG
AATCAAGTTACCTTTAATGTTAAGAATATCCTTTAGTTTTTGTGTGTCAA
AATTTTTTAGCAATAAAAATGAAGTAGGTTGAAAAGGAAGTTCACACTTA
ATTCTACATATGGAAAATACAGAGTTCAAATATATTGTCTTTCAATAAAT
AAACTGTTAACCCGcaaaatttctctctttttccCTTGACTTTAGTAGTT
GTAGTGACGGGGTCAGTTATTGCAATTTCTAGGGATATTGTTTACAAGAA
GCACCCGGTATCTTTTCAATGTATTTACATTTGTTTGGATTGTATGAGCA
AGACAATAAAGTCCATATCCTATAGAACAAAAGGCTTGAAACAGTTTTCA
GATTCTGTGGTTTTTCTCTATTAAATAAGGATCATGTTCTATTGAATGGA
CTCTTAAACTCAAGAAGTCATTTGTCAACTATTGACTACAATGTTGCAAT
AACGAATTTTTGCCGTTAAAACACTATTCCCATTCCGTTGACCTTCTTTT
AGGATAAATATTTGAGCGGCTcattttacaaagaaaaaagggtcgaatTC
GATATTGTGAAAAGAGTGGGGTTCACGGACCGTTAACAGGCAGTGAACTG
GGGTGTCTAATAAAAGGTGTCAAGTTTAAAATTTAGCAGAAATCCGTTGC
AATGCAACAAACTGCATACTGAATAAGAGAtcaaaaaagcctgaaaataa
CCAcctaattttgttttcttttgacTATCTTAACAAATTTAACATTTGAA
AACAATCCAGTGGTTTCGTTAGACATGTTTCTTAGGTTGTTTTTGATATT
GAGTGCACAAAGATCACCGATTTCGAACTAAATGGCCACATTTCAATGGG
GGAGTAAATTCAAATAGagtaaaatataagaacaaattgctCAAGGGTTG
AAAATGTCATCATTTCTAATCTATCTTCGGAGAGCAAACGTGGGTTGTTG
TAAATCAGTAGCATGAAGGTTAGCAATGAGTGTAATATCAAATTGTGTGA
CGGAAGGAAGTGGCCATTAGCGGCATTGTTTAACATGAGAAAGCTAGTGG
AGCCTAAGAGGCGATAAGCGGTGCGTGATGTTCAGGAAGTTGACCACATG
TGAAAGATCGTGATTAGGATGAAAGTATCTGGAACAGTGATAGACTTAAA
AAGTCATGATAACAATGgtgtttccataactcgaacatttCAGTTGAAGA
AGTTCGATTTACGGAGAATCTACTGTGTGATAGATTTTTATTCGAAGTAA
AGTAATCGAATTTTGATATGAAGAAAGAAACCAGCATGAGGGTGTGGGGG
CTTCCCCGGTAGTAAGAAAAAAGGTTTGGATACATAGCGACGATAACGAG
CGACAGGAAAAAACAGATTTGAATTGATTCGAATAGATTGTATGAATATG
TACAAGCCATTAAAATTGTTCTGGAAGGAAATGTTTGAGAGAAAAAGTCG
CCGAATTTCCGACCGGAAGAAATTAGCCGGAAAAAAGGTTCCGATTCGAA
TTTGAATACACCCGAAGGTTATGTATATGCCATGTGAAGGGTGGGAGCAA
ATGAATTTACGACACTTTAAAAGAGGTACCCTTAGGGTAGCAAGGTTTCC
AAGGTACCCTCTCCCGGGAATACATACATTTTTGAAGTGGCAAGCATTAA
AACTTTAAAGGAAAGGATTATATACTTACTACAAGGATTATCTTAACCTT
TCAGagaatttttcttcagtttCTATTTGGCTGACAAGTTACAACACATA
CAGTACAAGATTTTATAATTTCCGATTAACATTAAAGTTCCTCAGAAATT
AGTGTAAATGACCTCAATTAGTTAATGGAATGTTTTGTGGCGTAACTCAA
TATATTtataaagtcattaaaattcCTGTCTACCTCTCGGTTTTTTCAAT
AAGCTGGTGTCTATAGTGCTTTTTACGTGCAAAACAAATGCATGACAGAA
CATGTTTGTTTTGTTgctaaagtttttaaattttttcgggAGTTATTATT
TCGGGAGTGTCCGGAATCAAACCTATCCGATGGGATTAATGTCCAACATT
CCAAAGTCTTCTACAGTTTGCATTAGCATTTGCCTACAGTAAAGTTTCGA
AACATACCGATTTGGATATAATTTCGTTTTCACCTCatgtttttaattta
atttaatttaaggAATCAGTAAGATttatttcggatttttttggaTAAAT
TCTCGATTTTTCCAGATAAAATACAATTAAAGTCTCAAGTAGAATAAAAG
TGATATATAAAATAAAGTGATAATAATTATATTATGACAATCAacaaatc
tttctttttcttttacagAAGCTCAAAAAGAGTATGGAGGCTGCAGACGA
AGAGTTATTCGAAGATTTATCGGTGACAGTGAACGAAATTGTACCAGCCT
TCGACCATACCCCATCGCATGGTGCGAAGGAGTGTGTCTACCTGAGGGGA
AATTCGATAAGAAACACCCTTTGATGAGAttcaaagaatatttaaaaaag
aacagTAAATCATACGAGTGCGTTGCAGATCGAGTTGTCCGCCGAAAAGT
AGAGATATATTGCCATGATGATGAACTTTTACACGTGTATCGAATAAACG
TTATCAAGACGTGCAAATGTAAACAGGTTGAAAACGAGGTTTCAAACACA
GACGAAGAAGACGAAGTGGATAAAGGACAATCGATCGAGAATTCAGCAAT
AAGTATAAGTCAACAGGCGAAACGGTTCAGTCACCGTTTGCATAATTTAC
AGAACAAACTAAGGAAAGTACAGTGAAGTCCTGGTGACGTATTGTATTAG
AACGGGGTGATAAAATGCCGAACGCCGTAAAATGAAGATGGTAGGAGAAA
GCCATATAACACCCAGAAATGATGGATGCCTCAACGCGTAAAGAGAAAGA
ATTACAGCCTTCTGCCAGGCTCACttattattcaatctttttaacACGCC
TCCATGctaaatgcattttaaacaccGGAAGTATTGGGTGAATACAGATA
TTATAAATAGTACAACAAAGGAAAGCAAAGATACAATCCTTTCCAGAAAT
CATACGTTCTTGCGGAGAAAATGGACGAGTTTTGTTCAAAAAAATACACC
ATGATGTTAGCTTTTGACCGATTGGAACCAGCAATTCACAGAAGAATTGG
ATTGTTAAGATTCATATAGATTTAGAATAGTTTGTGGACAACTTAAAAAC
AATTACTTGATGACGATGTTTATTTTCCTTCTAGACGCCCTCTTGGAAAG
AGGCCAGAttctttattcaaaaaaactgTTTGAGTAAAAATTTATATTAA
AATGATATATTGAAATCCCCCTCCCCAAAATCCCCTTTAACCTCTTTAAT
TTTACCCCTTGACAGAAATTTAACCACTTTTCCAAGCATTTTGTTTAACG
ACCATTGTTGGATTTCATCTTTTCGAGAAGTATATTTTGAAAGATGAGCC
TTTTAATTATATCATTCAAATCAAATACGTTAGTTCCTAAATTTACATCA
TATAAATTTGACACAGAAATCGATTGACCGAATTTTACGTGCGGAAcgct
tactcttaggtgccaaataaacgcccctctccCACTTGTTAATATTCCGC
CCCCCCcacggaccttattaggaccacCCGTTATATTTTCAGTTAGCAAG
AAGAAGTcgccttattttgctccaaaaagcctgattctAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012484XLOC_012484Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022265-exon-sc0000410-1491911889:99169..99408TCONS_00022265-exon-sc0000410-1491911889:99169..99408Clytia hemisphaericaexon
TCONS_00022265-exon-sc0000410-1510915933:99169..99408TCONS_00022265-exon-sc0000410-1510915933:99169..99408Clytia hemisphaericaexon
TCONS_00022265-exon-sc0000410-1575043694:99169..99408TCONS_00022265-exon-sc0000410-1575043694:99169..99408Clytia hemisphaericaexon
TCONS_00022265-exon-sc0000410-1491911889:100672..101129TCONS_00022265-exon-sc0000410-1491911889:100672..101129Clytia hemisphaericaexon
TCONS_00022265-exon-sc0000410-1510915933:100672..101129TCONS_00022265-exon-sc0000410-1510915933:100672..101129Clytia hemisphaericaexon
TCONS_00022265-exon-sc0000410-1575043694:100672..101129TCONS_00022265-exon-sc0000410-1575043694:100672..101129Clytia hemisphaericaexon
TCONS_00022265-exon-sc0000410-1491911889:105737..107108TCONS_00022265-exon-sc0000410-1491911889:105737..107108Clytia hemisphaericaexon
TCONS_00022265-exon-sc0000410-1510915933:105737..107108TCONS_00022265-exon-sc0000410-1510915933:105737..107108Clytia hemisphaericaexon
TCONS_00022265-exon-sc0000410-1575043694:105737..107108TCONS_00022265-exon-sc0000410-1575043694:105737..107108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000410supercontigsc0000410:99169..107108 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.17264	1.48262	7.60204	10.2568	1.31896	1.9968	1.76195	0.926587	0.46265	1.68163	0.493761	1.05976	0.783324	1.33814	1.2941	1.16072	2.5222	0.738144	0.797609	1.63157	3.17424	5.49922	4.53085	4.32645	1.73724	0.589992
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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